XLOC_002569 (sh2d4a)


Basic Information

Item Value
gene id XLOC_002569
gene name sh2d4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6967293 ~ 6976645 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004779
ATGCTGCAGCAGATACTGATCGACATGTACATTGAGCCGGATCTCCTGGCTGAGCTGAACGAGGAACAGAAACAAGTtctcttctttaaaatgagagaAGAACAGATCAGGAGATGGAAAGAAAGAGAGACACAGCTGGAGAAACAGGAAGCCGCACATGCCAAAGCCAAAAAAGTTTCAGGAAAGAGTGTGTCGTGGATGAAGGGTCTGGATGATGATGTTTGGGTTTGGGTGATGGGAGAACATCAAAATGACAAACCCTATGATCAAGTCTGTGATGAGATCATGGCCCAGAGAGCAGCCCTGCAGGCCCAGAGAGAGGCTGAGGAACTCAGGGTTAAGAAAGCAGCAGAGCTGGAGAAGCGTTTCTCTGGAATATATCTTGAACCGGAGCAGGTTGTATTGTCAGATCAGGAAGTCCAGCAGAAAGCCAAACAGGCTGAGGCTCTTCAACAGAGAAAAGCAGAGGAGGAACTCAAGAAAATGGAGCAGGAGGAGAGGCGTAAGGCTGAGGAGGAGCTGAGGAGGCTGGAGCAGGAGAGGAAACAGCAGATTTACCAGTGCCTAAAGGAGGTGCAGAGCAGCAAAAACACA

Function

symbol description
sh2d4a Predicted to be active in cytoplasm. Orthologous to human SH2D4A (SH2 domain containing 4A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040426-932 Predicted to be active in cytoplasm. Orthologous to human SH2D4A (SH2 domain containing 4A).

Ensembl:

ensembl_id ENSDARG00000041378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004779 True 594 mRNA 0.49 4 6967293 6976645

Neighbor

gene id symbol gene type direction distance location
XLOC_002568 ppip5k2 coding downstream 100011 6781123 ~ 6867282 (-)
XLOC_002567 MACIR coding downstream 192022 6765109 ~ 6775271 (-)
XLOC_002566 BX511100.4 coding downstream 240179 6725657 ~ 6727114 (-)
XLOC_002565 NA coding downstream 271961 6693514 ~ 6695332 (-)
XLOC_002564 BX511100.3 coding downstream 287807 6677673 ~ 6679486 (-)
XLOC_002570 CABZ01061993.1 coding upstream 32729 7009374 ~ 7009490 (-)
XLOC_002571 NA coding upstream 73680 7050325 ~ 7061537 (-)
XLOC_002572 NA coding upstream 261599 7238244 ~ 7253898 (-)
XLOC_002573 nrg1 coding upstream 307476 7284121 ~ 7472359 (-)
XLOC_002574 wrn coding upstream 506900 7483545 ~ 7555660 (-)
XLOC_002563 BX511100.6 non-coding downstream 304425 6661059 ~ 6662868 (-)
XLOC_002562 BX511100.5 non-coding downstream 328126 6611075 ~ 6639167 (-)
XLOC_002575 BX537303.2 non-coding upstream 535363 7512008 ~ 7512123 (-)
XLOC_002585 BX294661.1 non-coding upstream 893982 7870627 ~ 7892684 (-)

Expression


Co-expression Network