XLOC_025691


Basic Information

Item Value
gene id XLOC_025691
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 47494522 ~ 47498343 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052778
GGCATCCTAAGCTCTAAGAGCTAGTTCACAATGGTGTATGACAATACATTCAAACGGTCAAACCTGCTGACCAGTTGAAGCTGGTCCTACTCATCATCAACATAGAACATTTTGCACAAAAGAACTAAAAAAAGACTGTTCAGGTCATTGCTTTAAAGAAAAGCTGATCATACAAGCCTAGGGCTAAATATAAGACTGGGTGTACTAACAACTTGCTGGCCAGCACACCGGCAAACATACTGACCCTGTGTCAATCAGTACAAGTTTCCATGCAATGGATTGCACACACGTCCCCTTAGAAGACTTACATGAGTGAGGGGTAAAGAAAGAGATGGGCATTGATTTGAGATGCACAGTGTCCACCTTGACCTCTTTCTAATAACATATTCTCACCTTTGCTCTCACTCTTTCTTTGTATGGCTATGTTTGGAATGCATACTAAAGCTTACTACGCAGTATAcactttgttttaaaatatgtccTGTGATCAGGGTCTATATAGTGTTTTCTAAACATTTGTGTACTGTTTCACACACAGATGTGTGGAAGTAAAACAATATGTACACTGTGGTCACATGGCCTCATCACATTGTACCAATCTATTCATACTGGGAATTAAACAGAATACAGTATTTggctaattaaatttgtttaattgtCCTAAAGTCCAATCATGAATTGACAAAATATCCATATATTATTTTGATCCCATTCATCACACTGGGAAACAAAAGGTCATGACATTGCATTGTGGGCTACACTAATATTTGCAGTCCACTGGTTAAATCTCCTCTACCAAGAAAAGAGTGCTACtgtctggctgtttctcaatttcaaaAATGATGAGAACGTatttgcgttcttgtggagaccggtcttgccaagttacctcaaAAGAACGAACTTGGAAGACTGCAAGAACAGAGAAAGTGTCCTGTAAGAAATGAAATGCTGCATTCTTCCCTGGTTCTTcgtgatggtcacatgaccttcacacgttttaacatataattatttaaacattacagcatttgtatgatttattgtttttccccatttcacaacatatactatgcataaagaccttacaaacatacattacacaatacaaaatgaaactaaatttaatacaaatttcggcaaataaacacccttaatctgtttatgcctttataaagATTTTCAAGGTAATGTTTCCTTTACCTCCTCATTTACGGAAACTCCTGATAAATacgttatatctctgaactttaatattaAATCTAGATTAAATTCTGCGCTTCTCACCTTCTGTATTCGGCCGCAATGATTTCTAGGACTTCTCGAGCAGGTTTTGCGCTCAAGTCTGCGTCGATGCGTCCTTAATATCAAAAACGCAGGAACTTTCACGCCTCCTCTGTTCATACGGTCTTAAGTTTtgtaactgaactttggcagtttaTGATTACATTACACAAGAACGCCAAGACGTAAAtacgctgaagaacgcatattgagaaacagcctgaaTCTGTCTGAATTCATACTCCATCATTTAGCACTCATGATGGCAAATGTGCTTGGAAATTGTGGAACAAAATGGACATGATATGATTCGGAATACATAGCATATACTGCAGCTTTAGTAAGAGTAGTATGCTCTTCAAAATATAGCGCAAACCCGTCACCCTCACATATACTCTGTACACAGAATAATAACCacactgaataaatgaataagtgcataaataatcaaaacagacaaataaatattaataaataaaacatcagacATGAGATTGAGCAGACTTCGGAGGGGCGGAACACTCGTGAATACCTCTTTTTTATTCAATAGGCCATGTAGCTGCTTTGCATATGGGGATTCTAAACCAAAGAGATTGTGTCTCATTGGTCAGATGTTCCTATCACTCAGTGAATGCTAATTctggtttgttgttgttgttgttgttgtggttttgTTTTCCATTGTACCTGACTggcaaattaacatttaaaatacctTTAACAAAGTTTTTTTAGATGGAAGCTTATACCGAGCTCTTATATAGATATAGATTTACTCTGCTTCCTGTTTTTCTAATGCGGGTCCATCTAACCCAGTAAAAATAGCCTCTGAAATACAGACGCAcgagcgcacacacatacacactctggtTCTCAGGCATCCAAACAATCATGTTCagacatacacatacaaataGTAAATCAACTGTCACACCAGATTCAGAAACAACAGCTGATATTGGTATGCAAAAACAGTCAAATACAATCTAGAGTTTGCGACTGAAACTTCACCAAATGTGCCCCCCGcccctatttttttttcacctaaaTATCTTATATTCTATTCATCTAGTCATCTGATATCTATTATATCTTTCAGATAAAATATAACCAACACTACATTATGGCTGCTGTCAATCAACCCACAATGCACCAGTGCACCCGCGAGGCACAGTGTATTCCCctttcattcatgtcaagcactTCCTGTCTGGGAATGTTGAAGGTCAAACATTACCAACAATACAATTAGATTTCCTGGCACCACTGTGCTTCAGGGCAGGACCGAACGAGGGCCGAAGAGAGCGAAagaggagagagggagagaccGGAGTGGCGTTCATGTCACAAActtcaaaacatgtttattttcgACTCTTTTGAATTTCTGATGCAGTAAAGGAACTGTTTTTTATAGTATTTGATacttttttgttgcttttgttcATCTATGTACAAGACGAGTAGAATAAGACTTGCTTTCGCTTTCGTGTGGTTTTGTATGTACAGAGGTCAGACTTGAAGAATGGCGGGAGCGGTAGCAAAAAAATTCTTCTAGCCACAATAACACAGGTGATACAGCACGTTCACCTACAACATCCATCAGTGATTCGGAGAGCAGGTTCAATCCTTTATCTGCCCCCATCTGTGGATCTGAGCCCTACAGAGTTTCATTCACAAGAGCTGAAAGGCTTCAAACCACTCAGCTGACTATGGGTTGTGTCCTAACGTCCCCCCGCCCTTCCCAGTTCCCAGTCTCTGTGGTTGTTCTGTACAGAAGAGTCAGTTCAGAGAAAGAAATAAAGGCAACTCCACTAAGGCAGCTTCCTGCTACCTGTGTCTGAACAATAGTCCTTGTTTTCCTTTTTCATGAGCATATGTTCACACTCTTGATGTTTAATAACAAGCACTtctgtgagtgtgcgtgtgtgtgtatgtgtagatTCCAGTTTGTGTCCTGGCTCAAAAACAGTTATTTTTGGCAACACGAAGAGCTTTCAGGAGGATTTTTGTCACTTGCAGTATAATGGCATACCCCCATTTCCTCACGTAACAGCTCTCATCAAATAATGatgaagaaaaacagaaaaagggaaaaagaaGGTAAGGAgttatgcaaaacatttttaaagacatggcataaaataaaacacagaaaTAGAAGTCCGGTGAGATGCTTGGTGGTATTCTTGGAGCAAAGAGAGCTGAAGGCAGAGACGTCCATTGAGAGAAGGCAGATAGTTGGTCTTGCtatttctgtatgtgtgtgtgtgtgtctgaggagGGAGGAGAAAATGATGCTGATGAGAGAGCAGAGTGGTTACACAGCACTTCAGAGAGCCTGCTGCCATGGAGACAAACCTCTCTGTCGCTCTCCCTGTTTAGGCTTTCCTTACCTCTTAGTTCAAAACAAATGAAAGAGCAAAAAGGCAACCAGACT
>TCONS_00052777
GGCATCCTAAGCTCTAAGAGCTAGTTCACAATGGTGTATGACAATACATTCAAACGGTCAAACCTGCTGACCAGTTGAAGCTGGTCCTACTCATCATCAACATAGAACATTTTGCACAAAAGAACTAAAAAAAGACTGTTCAGGTCATTGCTTTAAAGAAAAGCTGATCATACAAGCCTAGGGCTAAATATAAGACTGGGTGTACTAACAACTTGCTGGCCAGCACACCGGCAAACATACTGACCCTGTGTCAATCAGTACAAGTTTCCATGCAATGGATTGCACACACGTCCCCTTAGAAGACTTACATGAGTGAGGGGTAAAGAAAGAGATGGGCATTGATTTGAGATGCACAGTGTCCACCTTGACCTCTTTCTAATAACATATTCTCACCTTTGCTCTCACTCTTTCTTTGTATGGCTATGTTTGGAATGCATACTAAAGCTTACTACGCAGTATAcactttgttttaaaatatgtccTGTGATCAGGGTCTATATAGTGTTTTCTAAACATTTGTGTACTGTTTCACACACAGATGTGTGGAAGTAAAACAATATGTACACTGTGGTCACATGGCCTCATCACATTGTACCAATCTATTCATACTGGGAATTAAACAGAATACAGTATTTggctaattaaatttgtttaattgtCCTAAAGTCCAATCATGAATTGACAAAATATCCATATATTATTTTGATCCCATTCATCACACTGGGAAACAAAAGGTCATGACATTGCATTGTGGGCTACACTAATATTTGCAGTCCACTGGTTAAATCTCCTCTACCAAGAAAAGAGTGCTACtgtctggctgtttctcaatttcaaaAATGATGAGAACGTatttgcgttcttgtggagaccggtcttgccaagttacctcaaAAGAACGAACTTGGAAGACTGCAAGAACAGAGAAAGTGTCCTGTAAGAAATGAAATGCTGCATTCTTCCCTGGTTCTTcgtgatggtcacatgaccttcacacgttttaacatataattatttaaacattacagcatttgtatgatttattgtttttccccatttcacaacatatactatgcataaagaccttacaaacatacattacacaatacaaaatgaaactaaatttaatacaaatttcggcaaataaacacccttaatctgtttatgcctttataaagATTTTCAAGGTAATGTTTCCTTTACCTCCTCATTTACGGAAACTCCTGATAAATacgttatatctctgaactttaatattaAATCTAGATTAAATTCTGCGCTTCTCACCTTCTGTATTCGGCCGCAATGATTTCTAGGACTTCTCGAGCAGGTTTTGCGCTCAAGTCTGCGTCGATGCGTCCTTAATATCAAAAACGCAGGAACTTTCACGCCTCCTCTGTTCATACGGTCTTAAGTTTtgtaactgaactttggcagtttaTGATTACATTACACAAGAACGCCAAGACGTAAAtacgctgaagaacgcatattgagaaacagcctgaaTCTGTCTGAATTCATACTCCATCATTTAGCACTCATGATGGCAAATGTGCTTGGAAATTGTGGAACAAAATGGACATGATATGATTCGGAATACATAGCATATACTGCAGCTTTAGTAAGAGTAGTATGCTCTTCAAAATATAGCGCAAACCCGTCACCCTCACATATACTCTGTACACAGAATAATAACCacactgaataaatgaataagtgcataaataatcaaaacagacaaataaatattaataaataaaacatcagacATGAGATTGAGCAGACTTCGGAGGGGCGGAACACTCGTGAATACCTCTTTTTTATTCAATAGGCCATGTAGCTGCTTTGCATATGGGGATTCTAAACCAAAGAGATTGTGTCTCATTGGTCAGATGTTCCTATCACTCAGTGAATGCTAATTctggtttgttgttgttgttgttgttgtggttttgTTTTCCATTGTACCTGACTggcaaattaacatttaaaatacctTTAACAAAGTTTTTTTAGATGGAAGCTTATACCGAGCTCTTATATAGATATAGATTTACTCTGCTTCCTGTTTTTCTAATGCGGGTCCATCTAACCCAGTAAAAATAGCCTCTGAAATACAGACGCAcgagcgcacacacatacacactctggtTCTCAGGCATCCAAACAATCATGTTCagacatacacatacaaataGTAAATCAACTGTCACACCAGATTCAGAAACAACAGCTGATATTGGTATGCAAAAACAGTCAAATACAATCTAGAGTTTGCGACTGAAACTTCACCAAATGTGCCCCCCGcccctatttttttttcacctaaaTATCTTATATTCTATTCATCTAGTCATCTGATATCTATTATATCTTTCAGATAAAATATAACCAACACTACATTATGGCTGCTGTCAATCAACCCACAATGCACCAGTGCACCCGCGAGGCACAGTGTATTCCCctttcattcatgtcaagcactTCCTGTCTGGGAATGTTGAAGACAATTAGATTTCCTGGCACCACTGTGCTTCAGGGCAGGACCGAACGAGGGCCGAAGAGAGCGAAagaggagagagggagagaccGGAGTGGCGTTCATGTCACAAActtcaaaacatgtttattttcgACTCTTTTGAATTTCTGATGCAGTAAAGGAACTGTTTTTTATAGTATTTGATacttttttgttgcttttgttcATCTATGTACAAGACGAGTAGAATAAGACTTGCTTTCGCTTTCGTGTGGTTTTGTATGTACAGAGGTCAGACTTGAAGAATGGCGGGAGCGGTAGCAAAAAAATTCTTCTAGCCACAATAACACAGGTGATACAGCACGTTCACCTACAACATCCATCAGTGATTCGGAGAGCAGGTTCAATCCTTTATCTGCCCCCATCTGTGGATCTGAGCCCTACAGAGTTTCATTCACAAGAGCTGAAAGGCTTCAAACCACTCAGCTGACTATGGGTTGTGTCCTAACGTCCCCCCGCCCTTCCCAGTTCCCAGTCTCTGTGGTTGTTCTGTACAGAAGAGTCAGTTCAGAGAAAGAAATAAAGGCAACTCCACTAAGGCAGCTTCCTGCTACCTGTGTCTGAACAATAGTCCTTGTTTTCCTTTTTCATGAGCATATGTTCACACTCTTGATGTTTAATAACAAGCACTtctgtgagtgtgcgtgtgtgtgtatgtgtagatTCCAGTTTGTGTCCTGGCTCAAAAACAGTTATTTTTGGCAACACGAAGAGCTTTCAGGAGGATTTTTGTCACTTGCAGTATAATGGCATACCCCCATTTCCTCACGTAACAGCTCTCATCAAATAATGatgaagaaaaacagaaaaagggaaaaagaaGGTAAGGAgttatgcaaaacatttttaaagacatggcataaaataaaacacagaaaTAGAAGTCCGGTGAGATGCTTGGTGGTATTCTTGGAGCAAAGAGAGCTGAAGGCAGAGACGTCCATTGAGAGAAGGCAGATAGTTGGTCTTGCtatttctgtatgtgtgtgtgtgtgtctgaggagGGAGGAGAAAATGATGCTGATGAGAGAGCAGAGTGGTTACACAGCACTTCAGAGAGCCTGCTGCCATGGAGACAAACCTCTCTGTCGCTCTCCCTGTTTAGGCTTTCCTTACCTCTTAGTTCAAAACAAATGAAAGAGCAAAAAGGCAACCAGACT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052778 False 3724 lncRNA 0.39 2 47494522 47498343
TCONS_00052777 True 3705 lncRNA 0.39 2 47494522 47498343

Neighbor

gene id symbol gene type direction distance location
XLOC_025690 AL928740.1 coding upstream 33919 47460488 ~ 47460603 (+)
XLOC_025689 NA coding upstream 85123 47395535 ~ 47409399 (+)
XLOC_025688 ppap2d coding upstream 107145 47322494 ~ 47387377 (+)
XLOC_025687 tnfsf14 coding upstream 236078 47245764 ~ 47258444 (+)
XLOC_025686 dnm2a coding upstream 281407 47130912 ~ 47213115 (+)
XLOC_025692 LO018532.1 coding downstream 54010 47552353 ~ 47554777 (+)
XLOC_025693 NA coding downstream 541995 48040338 ~ 48041913 (+)
XLOC_025694 si:ch211-207b24.4 coding downstream 708126 48206469 ~ 48215187 (+)
XLOC_025695 fn3krp coding downstream 723070 48221413 ~ 48229972 (+)
XLOC_025696 tbcd coding downstream 736102 48234445 ~ 48327160 (+)
XLOC_025429 BX649540.1 misc upstream 17245486 30248739 ~ 30249036 (+)
XLOC_025685 NA non-coding upstream 385049 47107770 ~ 47109473 (+)
XLOC_025684 NA non-coding upstream 655884 46834857 ~ 46838638 (+)
XLOC_025683 NA non-coding upstream 691475 46798512 ~ 46803047 (+)
XLOC_025697 NA non-coding downstream 940723 48439066 ~ 48442896 (+)
XLOC_025698 NA non-coding downstream 966496 48464839 ~ 48467557 (+)
XLOC_025701 NA non-coding downstream 1119818 48618161 ~ 48629771 (+)
XLOC_025703 NA non-coding downstream 1396124 48894467 ~ 48907830 (+)

Expression


Co-expression Network