XLOC_025696 (tbcd)


Basic Information

Item Value
gene id XLOC_025696
gene name tbcd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48234445 ~ 48327160 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050565
ATGTCCGTGATGGAGGGTGCGTGTAATGGAGAGGATGCGGAGGTTTTGGCTCAGGCGTGTGTGCTGTCTGAGTTCACGGAGAGCACCGAGACTCGAGCTCTCATCAGCAGCCTGCCAGACATTCATCACGACACTGTCAGCAGAGAGGCCACCATCGAGAAGTTTGTGGTTATCATGGATCGCTACCAGGAGCAGCCACATCTACTGGACCCTCATCTTGAGTGGATGCTGAACATGCTTTTGGAGATGATCCGCAGTGAGAAGTCACCGCCTCTTCTGGTCCATCTCTGTTTCAAATTCCTCTACATCATCTCAAAGGTCAGAGGCTACAAAATCTTCATGCAGCTTTTCCCCCACGAAGTGTCAGACGTTCAGCCAGTGCTGGACCTCTTATGCAGACAGGACCAAAAAGACACTGAGACATGGGAAACGCGCTACATACTCCTCCTTTGGCTGTCTATGACATGTCTCATTCCTTTTGACTTGTCTCGCCTGGACGGCCATCTGTCCACTGTCCCGGGGACGAACAGAGAGTCCACCATGGATCGTATTCTGGAGGTTGCCAAGtccTTTCTTAGAGTCAGTGACAAATCTCGAGACGCTGCATCAGTGCTGGTATCAAAGTTTGTGACCCGTCCAGATGTGAAGCAGAAACGTCTGGGTGATTTTCTGGACTGGTGTCTGACCACCATTTCTCAGAGCAGTGAGATGACCATGGAGGGGACTGTGATCCTTGATGGAGCTCTACAGTCTCTGGCCCAGCTCTTCAAGCATGGGAAACGGGATGACTTTCTCCAGTATGCCCCCACAGTTCTTGAGTGCCTGAACCAAAAGAAAATAGCCGAAAGTAACCAGGCCACATTGCGTAAACTTGGAGTAAAGGTTGTCCAGAGACTTGGCTTAACTTTTCTGAAACCACGTTTGGCAAAATGGAGGTACCAGAGAGGAAGTCGGTCACTTGCTGTGAACCTGGCCCAGTCTTCTGTCACTGAAAGTGTAGAGGCTACAAAACCTGATCTAGAGTCTGTTAGCCAGGAAGAAGACTATGACATACCTCAGGAGGTAGAGAATGTCATTGAACAACTGCTGTTGGGACTGAAAGACAAAGAGACTATAGTCCGATGGTCTTCTGCCAAAGGGATTGGTAGAGTAACTGGTAGACTGCCTAAAGAGCTTGCTGATGACGTGGTTGAATCTGTTTTAGATTGTTTCAGTTTTCAGGAAACAGATAATGCTTGGCATGGGGGCTGCCTGGCTCTTGCAGAGCTAGGCCGAAGAGGACTGCTGCTTCCTTCTCGTCTGTCAGACGTGGTGCCTCTGATTCTGAAAGCTCTGACATATGATGAGAAAAGGGGAGCGTGCAGCTTGGGATCGAATGTGCGAGATGCAGGCTGCTATGTGTGCTGGGCTTTCGCTCGTGCCTATGAGCCCACTGAACTAAAGCCTTATGTCAACCAGATTGCCAGTTCACTGGTCATCGCAACAGTTTTTGACAGAAACGTCACCTGCAGAAAGGCCGCTTCTGCTGCTTTCCAAGAGAATGTGGGCAGACAGGGCACTTTCCCTCATGGCATAGACATTATCACAGCGGCGGACTACTTCACGGTCGGTAACCTGAATAACTGCTACCTGACTATCAGTGTTTACATTGCTGGTTTTGAGGAATACACCAAACCCTTAATTGACCACTTGGTGGCTATGAAAATCAATCACTGGGATGGGGCGATCAGAGAGCTTGCCACGAAAGCGTTGCACAATCTAACAATCCAGGCCCCTGAATACATGGCCAACACTGTTTTACCCCAGCTGCTGCCCATGGCCACAGGGATGGATTTGCACAGCCGTCATGGTGCAATTTTGGCCTGTGCTGAGATCACTCATGCTCTCTATAAGCTAGCAGCCCAAAACAACAGGTCAGTGACTGACCTCATGTCCTCTGACACCATCGAAGGCCTTAAAGATATTCATCAGAAGCTCTCTGACAGAAAGCAGTACAGGGGATTTGGTGGAGAGCTTATGAGACCAGCTGtgtgtagccTCATTGAAAAGCTCTCTCTCTCCAAGATGCCCTTCAAAGATGAGCCAGTTATCGCTGGTTGGCAGTGGTTGATCGATGACAGCTTGAAGAACCTTCACCTGTTCTCCAGTGGAGTCAGACGGGGCATACAGGATGCCGCAGTCTCGGCATTGGCAGCGTTGTGTTGGCAGTATTATCAGGTTGAACCTGGAGTAGCGGATGTGAAAATGCAAGAAGAGCTGGTCAGTCAGTACCTATCGGCCCTGCAGAGTCCAGAGGTTTTGACTCGCTGTGGCTGTGCTCTCGCCTTGGGCTCACTACCTCCGTTCATGATCCACAACAAACTACAGCAGATCCTGTCTGGGCTCCAGGCAACCTGTAGGGTTGCTCAGAAAGGGGAGAGTCTAACAGAAGCCAGGAGGGATGCTGCCACAGCCATGTCTCAGGTGTGTGTGGCTGTAGGAGTGTGTGCGCAAGGCAGGTCAGACCAAGTCCTGTGTGAGGACAATATAAGGCCTGTGTATGAAGCCCTGCTGGGTTGTATGAACGACTACAGCACTGACAGCAGAGGAGACGTGGGGGCCTGGGTGCGAGCGGCAGCGATGAGCAGCCTCATGGACGTGACATTGCTGGTGGTGGCATCGGCTCCAGAGCTGCTCTCCTCTGACCTTGTCCTGCGCATGATGTGTTGCCTGGCCCAGCAGGCTGCGGAGAAGATCGACCGCTACAGGGCCCATGCTGGCACTGTTTTTCTGCGCCTGCTCCATGGCACAGATCCTGCAGTACCTCACATTCCCCACCATGAGGAGCTACTGAGCATCTTCCCTCCAGAGACTGGAAACTCCCTGAACTGGAACGCAGCATCACAGGCCTTCCCTCACATCACACAGCTGCTGCGCCTTCCTCAGTACCAGTATCACACGCTTCTGGGTCTTTGTGTGTCTGTGGGAGGCCTCACCGAATCTACAGTGCGTTTTTCCTCTCAATCTTTATTCGATTACCTAAAGGGCATCCAGCAGGACTTCACAATGCTTCAACAGTTTGGAGACACATTGTTACGCATCTTCAGAGATAATCTGCGCAACGACAGGGTTTCTGTACCTTTACTGAAGATGGTGGACCAAATCCTTGCTAACGGCTGCTTTGACCTCTTCACTAGACAAGAGAGTCATCCATTTTGTGTAGAGCTGCTGTCGCTCTGTAAGGAGGAAATCAAGAAGTCCAAAGATGTCCAGAAGCTGTTGTCATGTATTGCAGTGTTCTGTGGACTGGTGCAGTTTCCTGGTGATGTGAGGAAGAAAGTCTTAGTTCAGCTGTTGATGTTGCTCTGTCACCCCTTCCCTTTGATCAGAAAGACGACTGCCAGCCAGGTATACGAGATGCTCTTGACCTACGATGATGTCATCGAAGATGAACAAGTGCTCGCTGATGTCATGGCCTCGCTTAGTGACACAAATTGGGAAAGTGACATCGCTACAGTGCGGAGTCACAGGAatcagctctgtgattggttggggGTGCCGAAGCCCACTCTTGTAGCCAAGacTTCCCCTCAATAG
>TCONS_00052372
GGTTGAACCTGGAGTAGCGGATGTGAAAATGCAAGAAGAGCTGGTCAGTCAGTACCTATCGGCCCTGCAGAGTCCAGAGGTTTTGACTCGCTGTGGCTGTGCTCTCGCCTTGGGCTCACTACCTCCGTTCATGATCCACAACAAACTACAGCAGATCCTGTCTGGGCTCCAGGCAACCTGTAGGGTTGCTCAGAAAGGGGAGAGTCTAACAGAAGCCAGGAGGGATGCTGCCACAGCCATGTCTCAGGTGTGTGTGGCTGTAGGAGTGTGTGCGCAAGGCAGGTCAGACCAAGTCCTGTGTGAGGACAATATAAGGCCTGTGTATGAAGCCCTGCTGGGTTGTATGAACGACTACAGCACTGACAGCAGAGGAGACGTGGGGGCCTGGGTGCGAGCGGCAGCGATGAGCAGCCTCATGGACGTGACATTGCTGGTGGTGGCATCGGCTCCAGAGCTGCTCTCCTCTGACCTTGTCCTGCGCATGATGTGTTGCCTGGCCCAGCAGGCTGCGGAGAAGATCGACCGCTACAGGGCCCATGCTGGCACTGTTTTTCTGCGCCTGCTCCATGGCACAGATCCTGCAGTACCTCACATTCCCCACCATGAGGAGCTACTGAGCATCTTCCCTCCAGAGACTGGAAACTCCCTGAACTGGAACGCAGCATCACAGGCCTTCCCTCACATCACACAGCTGCTGCGCCTTCCTCAGTACCAGTATCACACGCTTCTGGGTCTTTGTGTGTCTGTGGGAGGCCTCACCGAATCTACAGTAGGTCACACCACATAAACACAACCATTAAAACACAGTGGCCTCTTTTTTGCTTAAAggaacacacttttttttctgtcatttacaaTTGAGAGTAAACAGTTGactttaaccatttttttaatccatttagcgCATTTGTTGTTCTGGCagggtcacttttagcttagcttagcataattaattaaattagattagaccattagcattttcttcc

Function

symbol description
tbcd Predicted to enable GTPase activator activity and beta-tubulin binding activity. Acts upstream of or within brain development and retina layer formation. Predicted to be active in lateral plasma membrane. Orthologous to human TBCD (tubulin folding cofactor D).

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007021 tubulin complex assembly biological_process
GO:0007023 post-chaperonin tubulin folding pathway biological_process
GO:0006457 protein folding biological_process
GO:0034333 adherens junction assembly biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0007420 brain development biological_process
GO:0010842 retina layer formation biological_process
GO:0016328 lateral plasma membrane cellular_component
GO:0048487 beta-tubulin binding molecular_function
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-060823-1 Predicted to enable GTPase activator activity and beta-tubulin binding activity. Acts upstream of or within brain development and retina layer formation. Predicted to be active in lateral plasma membrane. Orthologous to human TBCD (tubulin folding cofactor D).

Ensembl:

ensembl_id ENSDARG00000098749

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050565 False 3576 mRNA 0.51 39 48234445 48327160
TCONS_00052372 True 986 lncRNA 0.52 7 48297506 48315584

Neighbor

gene id symbol gene type direction distance location
XLOC_025695 fn3krp coding upstream 4473 48221413 ~ 48229972 (+)
XLOC_025694 si:ch211-207b24.4 coding upstream 19258 48206469 ~ 48215187 (+)
XLOC_025693 NA coding upstream 192532 48040338 ~ 48041913 (+)
XLOC_025692 LO018532.1 coding upstream 679668 47552353 ~ 47554777 (+)
XLOC_025691 NA coding upstream 736102 47494522 ~ 47498343 (+)
XLOC_025697 NA coding downstream 111906 48439066 ~ 48442896 (+)
XLOC_025698 NA coding downstream 137679 48464839 ~ 48467557 (+)
XLOC_025699 metrnla coding downstream 146186 48473346 ~ 48489887 (+)
XLOC_025700 slc16a5b coding downstream 233952 48561112 ~ 48578458 (+)
XLOC_025701 NA coding downstream 291001 48618161 ~ 48629771 (+)
XLOC_025429 BX649540.1 misc upstream 17985409 30248739 ~ 30249036 (+)
XLOC_025690 AL928740.1 non-coding upstream 773842 47460488 ~ 47460603 (+)
XLOC_025689 NA non-coding upstream 825046 47395535 ~ 47409399 (+)
XLOC_025685 NA non-coding upstream 1124972 47107770 ~ 47109473 (+)
XLOC_025703 NA non-coding downstream 567307 48894467 ~ 48907830 (+)
XLOC_025704 NA non-coding downstream 671731 48998891 ~ 49006665 (+)

Expression


Co-expression Network