XLOC_025697


Basic Information

Item Value
gene id XLOC_025697
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48439066 ~ 48442896 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052780
TTTGTTTCACAGGTGGAGCAGATGAGAGCAACCGATGATTTCCTCCCACAGACTGATGAGATATTTACAAGATTCTCTTGTGTGACCCCGTGAACTCAAGGCGTGTGTGTTTTTCTGCTCGCGGCTGCGTGTGTGTCTTGGAGCATGACGTCGTGTGCCTGTAGGCGTGCgaggagtgtgtgtgcgtgtgcatgggGTGGCGCTGAGGCCTGCGGCGCTGTTCCTGCTGCTCCTGCTGCTGCTTATGAACTGGTCAAACTGCCTTTATGATTCTCGTTTTTTTGTGCCACGACTATTGTGGTTTTCCAGCTGGCCAGAGCTCCTTCATCAAGCTGCGGTCACTCGGTTCCATGTCGTCAGCACAGCGTGCATGAAAGAAAATCTTAATTTGAGAAAGCTCATATGCATCCAAGGCCTTGTCTACACCGTTTATTTCCTTCAGCACCTGTTCAGGATTTTAGTTTTATAGAGGTCAGATTTTTCcctatttcatttttttctccctGATGACCATTTATTATGTTGTTAAAGaattttaatttcaaaaactccagggtcaaatttatttttttattttac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052780 True 579 lncRNA 0.45 3 48439066 48442896

Neighbor

gene id symbol gene type direction distance location
XLOC_025696 tbcd coding upstream 111906 48234445 ~ 48327160 (+)
XLOC_025695 fn3krp coding upstream 209094 48221413 ~ 48229972 (+)
XLOC_025694 si:ch211-207b24.4 coding upstream 223879 48206469 ~ 48215187 (+)
XLOC_025693 NA coding upstream 397153 48040338 ~ 48041913 (+)
XLOC_025692 LO018532.1 coding upstream 884289 47552353 ~ 47554777 (+)
XLOC_025698 NA coding downstream 21943 48464839 ~ 48467557 (+)
XLOC_025699 metrnla coding downstream 30450 48473346 ~ 48489887 (+)
XLOC_025700 slc16a5b coding downstream 118216 48561112 ~ 48578458 (+)
XLOC_025701 NA coding downstream 175265 48618161 ~ 48629771 (+)
XLOC_025702 hs3st3b1a coding downstream 400022 48842918 ~ 48869632 (+)
XLOC_025429 BX649540.1 misc upstream 18190030 30248739 ~ 30249036 (+)
XLOC_025691 NA non-coding upstream 940723 47494522 ~ 47498343 (+)
XLOC_025690 AL928740.1 non-coding upstream 978463 47460488 ~ 47460603 (+)
XLOC_025689 NA non-coding upstream 1029667 47395535 ~ 47409399 (+)
XLOC_025685 NA non-coding upstream 1329593 47107770 ~ 47109473 (+)
XLOC_025703 NA non-coding downstream 451571 48894467 ~ 48907830 (+)
XLOC_025704 NA non-coding downstream 555995 48998891 ~ 49006665 (+)
XLOC_025709 BX649515.1 non-coding downstream 689445 49132341 ~ 49132477 (+)

Expression


Co-expression Network