XLOC_025704


Basic Information

Item Value
gene id XLOC_025704
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48998891 ~ 49006665 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052373
CTGCATGGGTTCGCTCATCCTGGTAAGAAGGGTGATCCTGCACAACTGGAGTAGCTGCACTTTCAGGATTGTATTTTTAGGACCGCATCTTTAGGACCCTAGTTTTTTGTGACATCGCCACCTGCCAGATTGGATCATACACGCTCTAATGAGATGGACGACATGGATGGCAAGAATAATgccATCATATATGCTCTGGGGGTCTTGAGGGGTTTGTCTTCAGATGATGCTGAGCAGGTCTACCCTTCTGGCACAAAATATCATTACAGTGAAGTAGAAGAATTTAATCAAAAAATTGACAAACAACTGAGGAAAGAAGGGAGACCATTCAATAGGTGGGTATTGCTCTTATATACTTAAAGATGTGCAGTTAACAGTTAGGTGTCCTTTTTGGTTCTTCCAAGTTTAAACCAGAAATATATATTACAGTTAAACatggtaaaatatatattttttattacttataataaatattaatctaAATTTAATTGCATAACAAATGGTTAAACTTTTGAATTCATGTACATGATTTtctagattatatatatatatatatatatatatatatatat
>TCONS_00052785
CATGCTATATGAAGCTGTAAGGTAATGTAGTGTAGGGAAAAGCTATGCAGTATTTTAGATCAATCTTGTTATTTTTCAAAGATATGGTCAGCGGTTTGCCTTCTGGACTGATGAGGCCAGAAACTTGCTCTAAGGAAAACTTCAGCCAATGTacagggtgccaaaaaagtgtgCTATGAGGAAATCCCACTTCACATTCAGGCTGTTGAAGTCCGCAcaacagaggaaaaaagaaaattgGAAAGGAAAATTGACGACTTTATTGTAAAGTTAAAGGGGTCTGAGGAGCATTTGGTGGTACTTTAACAATCTTCACATTTATCCATCTTTGTCTCTAGTGtaatacatttctttaaataattgttttataccATCGTTTGCCCATAGGGTGTTCTCAAAGGGAAGCCCTCTAAGCGGTTGCATAAGCAAGCATCTTTCCAGGTGCCTGTCTACATAGACAGTGAGGAAGAGCAAGATAACCTTTTTGGTTATCTTAAAGACGTACTAAACAGGACACCAACAAAACTCAGGTTTACAGATGAGGTGCAGCTTATCTGTGATGTTCTTTTTCCAGAGGTATGCAAGACCAAATAATGTACTTACAAAAATCTACTGTATATAAATTGCATGCTGGGTGTTACTCATTTATCGACCCATGTATAATGATATTTGCTGTTCAGTGGTGGTATATtagttcatttaaatgattttttttttttataggccATCATATATGCTCTGGGGGTCTTGAGGGGTTTGTCTTCAGATGATGCTGAGCAGGTCTACCCTTCTGGCACAAAATATCATTACAGGTCAGAATATGCTTTATTTTGGCACAATGCGTAGGGAACCTTTTTGTTACTGATATTTACGTTAACCCATTAGTACTTGTTCTCTATTTCAGTGAAGTAGAAGAATTTAATCAAAAAATTGACAAACAACTGAGGAAAGAAGGGAGACCATTCAATAGGTGGGTATTGCTCTTATATACTTAAAGATGTGCAGTTAACAGTTAGGTGTCCTTTTTGGTTCTTCCAAGTTTAAACCAGAAATATATATTACAGTTAAACatggtaaaatatatattttttattacttataataaatattaatctaAATTTAATTGCATAACAAATGGTTAAACTTTTGAATTCATGTACATGATTTtctagattatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034720 histone H3-K4 demethylation biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0070544 histone H3-K36 demethylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0072175 epithelial tube formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0035148 tube formation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052373 False 572 lncRNA 0.34 3 48998891 49006665
TCONS_00052785 True 1207 lncRNA 0.34 1 49005459 49006665

Neighbor

gene id symbol gene type direction distance location
XLOC_025703 NA coding upstream 91061 48894467 ~ 48907830 (+)
XLOC_025702 hs3st3b1a coding upstream 129259 48842918 ~ 48869632 (+)
XLOC_025701 NA coding upstream 369120 48618161 ~ 48629771 (+)
XLOC_025700 slc16a5b coding upstream 420433 48561112 ~ 48578458 (+)
XLOC_025699 metrnla coding upstream 509004 48473346 ~ 48489887 (+)
XLOC_025705 zgc:163083 coding downstream 14414 49021079 ~ 49024570 (+)
XLOC_025706 zgc:92161 coding downstream 37252 49043917 ~ 49058326 (+)
XLOC_025707 zgc:112146 coding downstream 67343 49074008 ~ 49079318 (+)
XLOC_025708 zgc:123284 coding downstream 91110 49097775 ~ 49100456 (+)
XLOC_025709 BX649515.1 coding downstream 125676 49132341 ~ 49132477 (+)
XLOC_025429 BX649540.1 misc upstream 18749855 30248739 ~ 30249036 (+)
XLOC_025698 NA non-coding upstream 531334 48464839 ~ 48467557 (+)
XLOC_025697 NA non-coding upstream 555995 48439066 ~ 48442896 (+)
XLOC_025693 NA non-coding upstream 956978 48040338 ~ 48041913 (+)
XLOC_025710 NA non-coding downstream 127717 49134382 ~ 49134743 (+)
XLOC_025712 NA non-coding downstream 449097 49455762 ~ 49459924 (+)
XLOC_025713 NA non-coding downstream 483889 49490554 ~ 49506172 (+)
XLOC_025715 NA non-coding downstream 558592 49565257 ~ 49624678 (+)

Expression


Co-expression Network