G662629


Basic Information

Item Value
gene id G662629
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 90452079 ~ 90453988 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU754106
ccatttgcaatatgatgtcatagggagtcaaaagtcaaagtcaaaagtaacgattttcctccgtgcaactgatgatctaaaatgtgcaacaaaatttttttgattttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcagataccatcacgaatttgtcatgctcaaaattcaaactttactttgctcaaactataccttggtcaacttgtattacatatttctttttgttttacttgtgcataaggcatatgttttctccatttgcaatatgatgtcataggaagtcaaaagtaaatattttcctccgtgcacctggtgatctgaaatgtgcacctggtgacctgaaatgtgcacctggtgatctaaaatatgcaactggtaacccccccaaaaaaattttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaagatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttacatgtatttttttttgtttccttactttttcaaagtcactgtgcatttggaata
>TU754104
cctggtgatctaaaatatgcaactggtaaccccccaaaaaaattttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaagcttgtgatctaaaatatgcagctggttaccaacattttttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaatttttttgatgtatttttttttgtttccttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttgcaatatgttttaaagggcaggtaccatcacgaatttgtcatgctataaattcaagctttacttttctcaaactatacctttg
>TU754105
ccatttgcaatatgatgtcatagggagtcaaaagtcaaagtcaaaagtaacgattttcctccgtgcaactgatgatctaaaatgtgcaacaaaatttttttgattttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcagataccatcacgaatttgtcatgctcaaaattcaaactttactttgctcaaactataccttggtcaacttgtattacatatttctttttgttttacttgtgcataaggcatatgttttctccatttgcaatatgatgtcataggaagtcaaaagtaaatattttcctccgtgcacctggtgatctgaaatgtgcacctggtgacctgaaatgtgcacctggtgatctaaaatatgcaactggtaacccccccaaaaaaattttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaagatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttgcaatatgttttaaagggcaggtaccatcacgaatttgtcatgctataaattcaagctttacttttctcaaactatacctttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU754106 False 685 lncRNA 0.34 3 90452079 90453988
TU754104 False 627 TUCP 0.33 2 90452287 90453260
TU754105 True 761 lncRNA 0.34 2 90452287 90453988
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965427 NA coding downstream 187292 90260405 ~ 90264787 (-)
LOC118965397 NA coding downstream 189710 90262216 ~ 90262369 (-)
LOC118965428 NA coding downstream 190996 90260930 ~ 90261083 (-)
LOC118965398 NA coding downstream 192273 90259653 ~ 90259806 (-)
hdac11 hdac11 coding downstream 505891 89886572 ~ 89946188 (-)
LOC110529068 LOC106583861 coding upstream 10658 90464646 ~ 90466537 (-)
mkrn2os.1 mkrn2os coding upstream 27316 90481304 ~ 90484094 (-)
rab43 rab43 coding upstream 177594 90631582 ~ 90639837 (-)
efcc1 LOC106583853 coding upstream 283508 90737496 ~ 90739194 (-)
G662599 NA non-coding downstream 43270 90406773 ~ 90408809 (-)
G662538 NA non-coding downstream 164609 90287240 ~ 90287470 (-)
G662535 NA non-coding downstream 169498 90282334 ~ 90282581 (-)
G662518 NA non-coding downstream 170162 90279929 ~ 90281917 (-)
G662528 NA non-coding downstream 181322 90270468 ~ 90270757 (-)
G662645 NA non-coding upstream 28117 90482105 ~ 90482754 (-)
G662671 NA non-coding upstream 79232 90533220 ~ 90534075 (-)
G662696 NA non-coding upstream 92743 90546731 ~ 90553723 (-)
G662695 NA non-coding upstream 100248 90554236 ~ 90556095 (-)
G662712 NA non-coding upstream 132530 90586518 ~ 90586825 (-)
G662500 iqsec1 other downstream 289131 90162138 ~ 90162948 (-)
G662321 NA other downstream 770472 89677089 ~ 89681607 (-)
G661773 LOC106583842 other downstream 992379 89458151 ~ 89459700 (-)
G661335 NA other downstream 1353501 88831729 ~ 89104274 (-)
G661426 LOC106583832 other downstream 1390598 89053076 ~ 89061481 (-)
G662819 NA other upstream 288604 90742592 ~ 90764290 (-)

Expression

G662629 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G662629 Expression in each Bioproject

Bar chart with 17 bars.
G662629 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network