Item | Value |
---|---|
gene id | hmgn3 |
gene name | LOC106570980 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048572.1 |
NCBI id | CM023226.2 |
chromosome length | 91622588 |
location | 204110 ~ 251092 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
high mobility group nucleosome-binding domain-containing protein 3-like isoform X3 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021569967.2 | False | 1422 | mRNA | 0.48 | 6 | 204110 | 251091 |
XM_021569969.2 | False | 1322 | mRNA | 0.48 | 5 | 204110 | 251091 |
XM_021569966.2 | False | 1453 | mRNA | 0.48 | 7 | 204110 | 251092 |
XM_021569968.2 | False | 1353 | mRNA | 0.48 | 6 | 204110 | 251092 |
TU754652 | False | 1297 | TUCP | 0.48 | 6 | 204128 | 251054 |
TU754653 | False | 1272 | TUCP | 0.48 | 7 | 204128 | 251054 |
TU754654 | False | 1267 | TUCP | 0.48 | 7 | 204128 | 251054 |
TU754655 | True | 1277 | lncRNA | 0.48 | 7 | 204128 | 251054 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110515871 | phip | coding | downstream | 8105 | 67258 ~ 196005 (-) |
LOC118965589 | NA | coding | upstream | 19583 | 270675 ~ 272012 (-) |
LOC118965475 | LOC106570990 | coding | upstream | 448931 | 700023 ~ 712275 (-) |
LOC110513701 | LOC106570988 | coding | upstream | 468942 | 716794 ~ 833087 (-) |
LOC118965602 | NA | coding | upstream | 909730 | 1160822 ~ 1162168 (-) |
LOC118965476 | ppp1r14c | coding | upstream | 1078581 | 1307226 ~ 1414828 (-) |
G663068 | NA | non-coding | downstream | 23543 | 180237 ~ 180567 (-) |
G663063 | NA | non-coding | downstream | 45663 | 158035 ~ 158447 (-) |
G663050 | NA | non-coding | downstream | 105800 | 97908 ~ 98310 (-) |
G663041 | NA | non-coding | downstream | 129610 | 73784 ~ 74500 (-) |
G663038 | NA | non-coding | downstream | 152726 | 51126 ~ 51384 (-) |
G663098 | NA | non-coding | upstream | 1106 | 252198 ~ 253555 (-) |
G663101 | NA | non-coding | upstream | 7333 | 258425 ~ 258652 (-) |
G663108 | NA | non-coding | upstream | 14131 | 265223 ~ 265566 (-) |
G663148 | NA | non-coding | upstream | 56231 | 307323 ~ 308302 (-) |
G663149 | NA | non-coding | upstream | 57539 | 308631 ~ 309174 (-) |
G663215 | NA | other | upstream | 130230 | 381322 ~ 388193 (-) |
G663235 | NA | other | upstream | 177099 | 428191 ~ 430258 (-) |
G664089 | NA | other | upstream | 1186668 | 1437760 ~ 1438441 (-) |
armc1l | LOC106571055 | other | upstream | 1229083 | 1479450 ~ 1498700 (-) |
G664733 | NA | other | upstream | 1742797 | 1993889 ~ 1994530 (-) |