LOC118965602


Basic Information

Item Value
gene id LOC118965602
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 1160822 ~ 1162168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053012.1
atactacagggtactgttataatactacagggtactgttataatactgcagggtactgttataatactacagggttCTGTTATAATACTACTTACTGGGTGTCATCAGACTAGTTAAACTGGTACCACTACAGggtactgttataatactacttactgggtactgttataatactacagggtactgttataatactacaatgTGTCATCAGACTAGCACCTGTTAAACTGGTACCACTACAGggtactgttataatactacttACTGGGTGTCATCAGACTAGCACCTGTTAAACTGGTACCACTACAGggtactgttataatactacagggtactgggtactgttataatactacagggtactgttataatactacagggtactgttataatactacaaggtactgttataatactacttACTGGGTGTCATCAGACTAGCACCTGTTAAACTGGTACCACTACAGggtactgttataatactacttACTGGGTGTCATCAGACTAGCACCTGTTAAACTGGTACCACTACAGGGTACTGATATAATACTACAGGGTACTGggtactgttataatactacagggtactgttataatactacaaggtactgttataatactacttACTGGGTGTCATCAGACTAGCACCTGTTAAACTGGTACTACTATAGggtactgttataatactacagggtatTGTTATACTACTACAGggtactgttataatactacaaggtactgttataatactacagggtactgttataatactacaaGGTACTGTTATAATACTGCAGGGTACTGTTATAACACTACAAggtactgttataatactacagggtacTGTCATAATACTACAGggtactgttataatactacaatgTGTCATCAGACCAGCACCTGTTAAACTGGTACCACTACAGggtactgttataatactacagggtactgttataatactacaaggtactgttataatactacagggtactgttataatactacaatgTGTCATCAGACTAGCACCTGTTAAACTGGTACCACTATAGggtactgttataatactacagggtactgttataatactacagggtactgttataatactactggGTGTCATCAGACTAGCACCTGTTAAACTGGTACTACTATAGggtactgttataatactacagggtactgttataatactacagggtactgttat
>XR_005053013.1
atactacagggtactgttataatactacagggtactgttataatactgcagggtactgttataatactacagggttCTGTTATAATACTACTTACTGGGTGTCATCAGACTAGTTAAACTGGTACCACTACAGggtactgttataatactacttactgggtactgttataatactacagggtactgttataatactacaatgTGTCATCAGACTAGCACCTGTTAAACTGGTACCACTACAGggtactgttataatactacttACTGGGTGTCATCAGACTAGCACCTGTTAAACTGGTACCACTACAGggtactgttataatactacagggtactgggtactgttataatactacagggtactgttataatactacagggtactgttataatactacaaggtactgttataatactacttACTGGGTGTCATCAGACTAGCACCTGTTAAACTGGTACCACTACAGggtactgttataatactacagggtactgggtactgttataatactacagggtactgttataatactacaaggtactgttataatactacttACTGGGTGTCATCAGACTAGCACCTGTTAAACTGGTACCACTACAGGgtactgttataatactacttACTGGGTGTCATCAGACTAGCACCTGTTAAACTGGTACTACTATAGggtactgttataatactacagggtatTGTTATACTACTACAGggtactgttataatactacaaggtactgttataatactacagggtactgttataatactacaaGGTACTGTTATAATACTGCAGGGTACTGTTATAACACTACAAggtactgttataatactacagggtacTGTCATAATACTACAGggtactgttataatactacaatgTGTCATCAGACCAGCACCTGTTAAACTGGTACCACTACAGggtactgttataatactacagggtactgttataatactacaaggtactgttataatactacagggtactgttataatactacaatgTGTCATCAGACTAGCACCTGTTAAACTGGTACCACTATAGggtactgttataatactacagggtactgttataatactacagggtactgttataatactactggGTGTCATCAGACTAGCACCTGTTAAACTGGTACTACTATAGggtactgttataatactacagggtactgttataatactacagggtactgttat

Function

NR:

description
PREDICTED: uncharacterized protein LOC106585862

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053012.1 False 1207 mRNA 0.37 3 1160822 1162168
XR_005053013.1 True 1207 mRNA 0.37 3 1160822 1162168

Neighbor

gene id symbol gene type direction distance location
LOC110513701 LOC106570988 coding downstream 327735 716794 ~ 833087 (-)
LOC118965475 LOC106570990 coding downstream 448547 700023 ~ 712275 (-)
LOC118965589 NA coding downstream 888810 270675 ~ 272012 (-)
hmgn3 LOC106570980 coding downstream 909730 204110 ~ 251092 (-)
LOC110515871 phip coding downstream 964817 67258 ~ 196005 (-)
LOC118965476 ppp1r14c coding upstream 167505 1307226 ~ 1414828 (-)
LOC118965590 NA coding upstream 261319 1423487 ~ 1424991 (-)
LOC110518775 LOC106592749 coding upstream 261319 1423487 ~ 1463667 (-)
armc1l LOC106571055 coding upstream 317282 1479450 ~ 1498700 (-)
tbx18 LOC106571000 coding upstream 645417 1807585 ~ 1828394 (-)
G663805 NA non-coding downstream 25606 1134996 ~ 1135216 (-)
G663793 NA non-coding downstream 37570 1122963 ~ 1123252 (-)
G663767 NA non-coding downstream 60685 1099730 ~ 1100137 (-)
G663760 NA non-coding downstream 67586 1092977 ~ 1093236 (-)
G663747 NA non-coding downstream 94043 1066332 ~ 1066779 (-)
G663838 NA non-coding upstream 5766 1167934 ~ 1168266 (-)
G663839 NA non-coding upstream 6142 1168310 ~ 1168648 (-)
G663860 NA non-coding upstream 23198 1185366 ~ 1185572 (-)
G663864 NA non-coding upstream 31523 1193691 ~ 1194643 (-)
G663875 NA non-coding upstream 41760 1203928 ~ 1204228 (-)
G663235 NA other downstream 730564 428191 ~ 430258 (-)
G663215 NA other downstream 773840 381322 ~ 388193 (-)
G664089 NA other upstream 275592 1437760 ~ 1438441 (-)
G664733 NA other upstream 831721 1993889 ~ 1994530 (-)
G664763 rab10 other upstream 1129234 2291402 ~ 2350981 (-)
G665603 NA other upstream 2074720 3236888 ~ 3240052 (-)

Expression

LOC118965602 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 2.
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LOC118965602 Expression in each Bioproject

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LOC118965602 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 35.
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Co-expression Network