LOC118965590


Basic Information

Item Value
gene id LOC118965590
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 1423487 ~ 1424991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986811.1
ATGGCTGGAAAAGAGGAGATGCATCTTCTGGCCTGGAGAGAATCTGTTCCCAACTCAACGCTGCCCTCCTTCTCAAGACTTCTAACAGCATCTTCTGGCCTGGAGAGGATCTGTTCCCAACTCAACCTAGAGGTTTCTACAGGGGTGGATGATGAGGTAAACCTAGAGGTTTCTACGGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACGGGGGTGGATGATGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACGGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACGGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACGGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTCTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACGGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGTGAGGAGGTAAACCTAGAGGTTTCTACAGGGGTGGAAGGGGAGGTAAATAATAGTGTACACTACTGATTCATGTTTTAGTTTGATACTTATTGCTGTAAAGAATAGTGTACACTACTGATTCATGTTTTAGTTTGATACTCATTGCTGTAAAGAATAGTGTACACTACTGA

Function

NR:

description
polysialoglycoprotein precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986811.1 True 1019 mRNA 0.49 3 1423487 1424991

Neighbor

gene id symbol gene type direction distance location
LOC118965476 ppp1r14c coding downstream 8659 1307226 ~ 1414828 (-)
LOC118965602 NA coding downstream 261319 1160822 ~ 1162168 (-)
LOC110513701 LOC106570988 coding downstream 590400 716794 ~ 833087 (-)
LOC118965475 LOC106570990 coding downstream 711212 700023 ~ 712275 (-)
LOC118965589 NA coding downstream 1151475 270675 ~ 272012 (-)
armc1l LOC106571055 coding upstream 54459 1479450 ~ 1498700 (-)
tbx18 LOC106571000 coding upstream 382594 1807585 ~ 1828394 (-)
LOC110529244 NA coding upstream 543299 1968290 ~ 1975576 (-)
selenoi LOC106571011 coding upstream 551319 1976310 ~ 2021626 (-)
LOC110529242 LOC106591799 coding upstream 636707 2061698 ~ 2096832 (-)
G664013 NA non-coding downstream 19958 1394739 ~ 1403529 (-)
G664016 NA non-coding downstream 22619 1399907 ~ 1400868 (-)
G664004 NA non-coding downstream 42125 1380714 ~ 1381362 (-)
G664003 NA non-coding downstream 49824 1371928 ~ 1373663 (-)
LOC110518775 LOC106592749 non-coding upstream 17410 1423487 ~ 1463667 (-)
G664100 NA non-coding upstream 33533 1458524 ~ 1458864 (-)
G664106 NA non-coding upstream 51056 1476047 ~ 1476817 (-)
G664114 NA non-coding upstream 65484 1490475 ~ 1491483 (-)
G664129 NA non-coding upstream 146539 1571530 ~ 1591912 (-)
G663235 NA other downstream 993229 428191 ~ 430258 (-)
G663215 NA other downstream 1036505 381322 ~ 388193 (-)
hmgn3 LOC106570980 other downstream 1172433 204110 ~ 251092 (-)
G664089 NA other upstream 12769 1437760 ~ 1438441 (-)
G664733 NA other upstream 568898 1993889 ~ 1994530 (-)
G664763 rab10 other upstream 866411 2291402 ~ 2350981 (-)
G665603 NA other upstream 1811897 3236888 ~ 3240052 (-)

Expression

LOC118965590 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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LOC118965590 Expression in each Bioproject

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LOC118965590 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network