XLOC_025711 (tecra)


Basic Information

Item Value
gene id XLOC_025711
gene name tecra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49397115 ~ 49421274 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050574
CAGATACACACTATCCCTCAGTATAACTGTGTGGATGTATGAGCTACGTCCTACTGGACCGGATCCCACAAGGTCACGGGGCTGGTATTCAGCAAAGCAGGCATATAAATTTAGCTGCATGAAAAGCCACGGATTATGTCTTGGGACTCTCGTATTTCATCTTCATAGGAGTGGTTGCGATGGCCAGCCCTCAGGTGTTAAGAGGTGGCAGATATTTCAATCACACTGCGCTCGCTCATACTGTTGCTTCTTCTCACTTTAGACTCAGTCTGCTCTGTTTAACATTGAGGACGTtgatttggattttttatttCGAAGATCTGAGGTGATATGTAGAGAGTGACCAAACTTTAACATACGGATTTAAGGCTAAATTCGGTGTTCGATACATTTGAGGAGCTATCATGGATGCTTTAGCTTTAGAAGCGAAAGGAGCCAAGGGTGAAGGTTCGGCGGCTCCTGCTCCTGCTGCTCCACCTCCAAAACCCAGACCAAAACCTCCAAAAAAAGCCAAACGGATTGTATACTTTGAGGTGGAGATACTGGATGTCAAAACCAGGGAAAAACTACTACTGCTGGATAAGGTAGAGCCAACAGCCACGATTCTGGACATTAAGTCTATGTTCCACAAATCAAATCCACACTGGTATCCTGCCAGGCAGTCTTTATGCCTGGACCCAAaAGGAAAACCCCTAAAAGATGAAGATATCCTTCAGGAGCTTCCTGTGGGAACCACTGCAACCTTCTACTTTAGAGACTTGGGAGCCCAGATCGCATGGGGAACTGTGTTCTTAATCGAGTGCATTGGACCACTTGTCCTGTACCTGCTGTTTTATTTCAGACTGCCCTTAATCTACGCTCCCAAGTACGATTTCACCGCCAGTAAACATTTAGTTGTGCATATAGCCTGTGCCTGTCACACCTTCCACTATGCAAAGAGGATCATGGAGACATTGTTTGTCCATCGCTTCTCCCATGGCACCATGCCATTTCGTAACATTTTTAAAAACTGCATATATCACTGGTGCTTTGCTGCATGGATGGCTTATTACATCAATCACCCTCTCTACACAACGCCATATTATGGTGAGAAGCAGGTAAAGACAGCGCTGGGAATCTTCCTATTCTGCCAACTTGGAAGCTTCTCAATTCATATGGCTCTGCGCAGTCTTAAACTACCTGGCTCAAAGACTAAGAAGATTCCTTATCCAACAAAGAATCCTTTTACTTGGATATTTGCACTTGTTTCGTGTCCAAACTACACATACGAGGTGGGATCTTGGCTTGGATTCACGCTCATGACCCAGTGTGTGCCTGTCTTGTTCTTCACCGTGGTGGGATTCATCCAGATGACGGTCTGGGCCAAAGGAAAGCATCGCAGTTACCTAAAGGAGTTCAAGGAGTACCCCACACTGCGCTCACCAATCCTGCCCTTCGTCCTGTAGCACTGACAAGATCGAgatgtttttaaatcaaataaaatctgtATAAATATACAGCAAGTCTTAATATATTGATGTACGAAAAACTGACTGTAGCACATTGAGACACTCTAATGTATTTATGACAGGTCATTCTATTTTAATAGCCACGAATGGAGAAATGACTAATGCCATAAAGTGAATTAAGGGATACTGTTCTTTTATCTTGAGTAAGTGACTGACTGAAGTGAAATTCAATGATTTTTCTGTAGCTGATATTTATCATGTGCCTTATTTGACTGCTACATTTCcatgtattacactgtaaaaaattgctgctAAAAAACGgtcagaaaataatgttttttccactaaaaaagtaatattcggttaaaaacagtgcattctgtgtaacatttttgttttcgagaaagtaaccaacagcagaaaactgtgagctaacagagttcagattcgacattttgaagtctgtgtttaaaatcacactttgtgcccttgttcactattccATCAACTAGTTTATCAATATAGTTCatctgacagagttaatgaacactaatgagtgaattcagacactgataaacacctgctgttaataatcacaattactgaaggaaagagaaacaagaaacacaaacaacacttgagttacaacattaaataaaatcaagtaaaataaaacactttcagtctcagcagaggatcattaaacaactccacaaacaacagcagacacacttattactgactgatttgacttccatacaattctcattgagatccaacagaaatttagCCGTAAGTCACcataatggagtgaggggctggtttagttggggtCTTCACCCATGGACTCAAAATTCAGACTCTCCAACTAATACAGAGTtaacaaaaacacttttattatagTAGTAAAGTGGGAAAGGCAATAGATAGattaatctatttgtctgaaattactTCTGATAAATGTTTAGTACAAACCTGGATGAAGGGCCTCATACAATAGATTTTATGCAGATGTTTCTTTAATttatgagaagtggaaacagattAAATACCTACGTaaatacttaacagttaagaaataacatacaaaaacagttcagttatgacaaagacacactcagacctcatgaatcagaccttgtatctcaacaatggtaacagttcaaatgtttcatgcagcaatgcatgctgggtgaggcacagtacaaatatcccagcatgcattgcggcatgaataaatgttgtataatagtCTCACGgttttctttatttatgtttgattctgcttttgtttatgtttagactttcagttgcctgtttgtgagttaaactgttcattttgttagttgtcaccattattgaggttcatacgcCGATTACTGACGTCTGTTTGAGTGCTAATAAAGTCATAGAGCAAAGTGTTTtagtccaagatattcttaaaacttccagaaatcattgccacatATAGACCTAAAATGTGAAACAATAGAttaaacattgaataggagcagtaaattatattatacttAATTAGAACAGATTCTACcgtttaatagcaacatgaacatcaccagctCATATTTAGGTTTTTAGCTGGCTTGCCACATCAAAAGagcttttttaaacaaagttcttaacaattgcagcagccaagatatgttaatgataaaaatatcagggctgagagcccaactaaagcaaactcttttctccatgatggtgacgtaaaactttaacttttttctcaagaagaactttagtaaatgttatacaaaaataaatgtattaagtaataagtgtagctggtgatgatgtttgtagagttgtttaatcatccgctgatcatttaaatgatttaatcatttgttgttcttcaggttatttcattataaagctgtgactaaagttgtagttttgtatgttctgttcttgttttttcccttcagtatttcttcatttgttcattgttaatcctcaatcatcatttaattagtcatttaattaattcatttacttcagctttgctacatgtttcttgaacactcagtagtgtggacacttcaattaaatctGGAGTATATGCTCtgtggtttaaagggttaaatgaATGGAGTTTAAaagagtgtaaaaatgtattttagcaggaatatactgttaatttaaactacggaagtagactgtaaaaaaacagtagattgctggcaaccacagctgccagtagtttaccgttaaatcaaggaaaaaacaatattatactgtaaaacctgaagcaaatttcttctgtgtgtcaccgttgtggaggagagtagagccagtgtatgagttaaagatgaacaatgaactgctgatgttattctgtatttttctttatttaaagacaGTGGCTGAtcagttgctgatgcagtcagaatctctctttGTTAATTCCaactttacatgtatgtgtgctgatgtgaaatttaagacatttgagTCAAAcagaacttttctaattaactaaaataagttatcattataaacATGCTtctatagcacattacttcataaactcatacaGCTTTTGGCAaatttgaggcagttgctttcagtaaacaaaatgagttcacttgagtgtTGTGAAtttcaatgtagtccatgtatttttacagcaacatactataaaataacagtacattgctggcaactgcagctgccagtattttaccgttttttaacgggacaatttttaacagtgtacatcGGTTTATCCAACAACCTATTAAAACACATCAGGCTGTTTGTAAAACGTACATtatattttgcaataaaaaaacaccCCTTTAAAAACTGTTTTGCACTGCAACATTCTGAAATTCAAGCAAATAAACATGTAATTTTTAAGAGAATcacatttctgaatatttatatcACAAAataggtacactgtaaaatatcttGATCTATTTAAAGCAAATTCTACACTACTATTATTGTTCAAAGGTTAAAGAATTCTCTTCTGTATACCAAGCCTGCATTTCTTTAATCAAAAGTAGCgttaaaacagaaatattgtttcatatttttattgaatgatgaaataaagtaaatatacagttatactgtccaattacttttgaaCCCTTAACAAGTgcgaggcacatatgcaaactgttgtaattcctacaccgttcacctgatttgaatgtaaataaCCTCAAATTAAAGCTCACAGTCTGCAGG

Function

symbol description
tecra Predicted to enable oxidoreductase activity. Predicted to be involved in very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TECR (trans-2,3-enoyl-CoA reductase).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090930-1 Predicted to enable oxidoreductase activity. Predicted to be involved in very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TECR (trans-2,3-enoyl-CoA reductase).

Ensembl:

ensembl_id ENSDARG00000101585

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050574 True 4673 mRNA 0.36 11 49397115 49421274

Neighbor

gene id symbol gene type direction distance location
XLOC_025710 NA coding upstream 262372 49134382 ~ 49134743 (+)
XLOC_025709 BX649515.1 coding upstream 264638 49132341 ~ 49132477 (+)
XLOC_025708 zgc:123284 coding upstream 296659 49097775 ~ 49100456 (+)
XLOC_025707 zgc:112146 coding upstream 317797 49074008 ~ 49079318 (+)
XLOC_025706 zgc:92161 coding upstream 338789 49043917 ~ 49058326 (+)
XLOC_025712 NA coding downstream 34488 49455762 ~ 49459924 (+)
XLOC_025713 NA coding downstream 69280 49490554 ~ 49506172 (+)
XLOC_025714 crb3a coding downstream 99832 49521106 ~ 49548229 (+)
XLOC_025715 NA coding downstream 143983 49565257 ~ 49624678 (+)
XLOC_025716 NA coding downstream 332494 49753768 ~ 49760696 (+)
XLOC_025429 BX649540.1 misc upstream 19148079 30248739 ~ 30249036 (+)
XLOC_025704 NA non-coding upstream 390450 48998891 ~ 49006665 (+)
XLOC_025703 NA non-coding upstream 489285 48894467 ~ 48907830 (+)
XLOC_025701 NA non-coding upstream 767344 48618161 ~ 48629771 (+)
XLOC_025719 NA non-coding downstream 865506 50286780 ~ 50288488 (+)

Expression


Co-expression Network