Gene
RNA
| Item | Value |
|---|---|
| gene id | armc1l |
| gene name | LOC106571055 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 1479450 ~ 1498700 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: armadillo repeat-containing protein 1-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036984536.1 | False | 1570 | mRNA | 0.52 | 7 | 1479450 | 1498556 |
| XM_036984534.1 | False | 1634 | mRNA | 0.52 | 7 | 1479450 | 1498700 |
| TU755950 | True | 780 | TUCP | 0.58 | 7 | 1480175 | 1498571 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110518775 | LOC106592749 | coding | downstream | 15783 | 1423487 ~ 1463667 (-) |
| LOC118965590 | NA | coding | downstream | 54459 | 1423487 ~ 1424991 (-) |
| LOC118965476 | ppp1r14c | coding | downstream | 64622 | 1307226 ~ 1414828 (-) |
| LOC118965602 | NA | coding | downstream | 317282 | 1160822 ~ 1162168 (-) |
| LOC110513701 | LOC106570988 | coding | downstream | 646363 | 716794 ~ 833087 (-) |
| tbx18 | LOC106571000 | coding | upstream | 308885 | 1807585 ~ 1828394 (-) |
| LOC110529244 | NA | coding | upstream | 469590 | 1968290 ~ 1975576 (-) |
| selenoi | LOC106571011 | coding | upstream | 477610 | 1976310 ~ 2021626 (-) |
| LOC110529242 | LOC106591799 | coding | upstream | 562998 | 2061698 ~ 2096832 (-) |
| LOC110531067 | dnmt3a | coding | upstream | 611360 | 2110060 ~ 2200907 (-) |
| G664106 | NA | non-coding | downstream | 2633 | 1476047 ~ 1476817 (-) |
| G664100 | NA | non-coding | downstream | 20586 | 1458524 ~ 1458864 (-) |
| G664013 | NA | non-coding | downstream | 75921 | 1394739 ~ 1403529 (-) |
| G664129 | NA | non-coding | upstream | 72830 | 1571530 ~ 1591912 (-) |
| G664130 | NA | non-coding | upstream | 74293 | 1572993 ~ 1609484 (-) |
| G664134 | NA | non-coding | upstream | 75589 | 1574289 ~ 1581989 (-) |
| G664135 | NA | non-coding | upstream | 76805 | 1575505 ~ 1592312 (-) |
| G664132 | NA | non-coding | upstream | 90540 | 1589240 ~ 1595414 (-) |
| G664089 | NA | other | downstream | 41009 | 1437760 ~ 1438441 (-) |
| G663235 | NA | other | downstream | 1049192 | 428191 ~ 430258 (-) |
| G663215 | NA | other | downstream | 1092468 | 381322 ~ 388193 (-) |
| hmgn3 | LOC106570980 | other | downstream | 1228396 | 204110 ~ 251092 (-) |
| G664733 | NA | other | upstream | 495189 | 1993889 ~ 1994530 (-) |
| G664763 | rab10 | other | upstream | 792702 | 2291402 ~ 2350981 (-) |
| G665603 | NA | other | upstream | 1738188 | 3236888 ~ 3240052 (-) |
| G665655 | NA | other | upstream | 1841356 | 3340056 ~ 3340960 (-) |
| G665718 | NA | other | upstream | 1918413 | 3417113 ~ 3418288 (-) |
