Item | Value |
---|---|
gene id | LOC110531067 |
gene name | dnmt3a |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048572.1 |
NCBI id | CM023226.2 |
chromosome length | 91622588 |
location | 2110060 ~ 2200907 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
dnmt3a | Enables DNA (cytosine-5-)-methyltransferase activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Involved in DNA methylation and negative regulation of transcription by RNA polymerase II. Located in cytoplasm; euchromatin; and nuclear lumen. Implicated in T-cell acute lymphoblastic leukemia; acute lymphoblastic leukemia; acute myeloid leukemia; myelodysplastic syndrome; and stomach cancer. Biomarker of autoimmune thrombocytopenic purpura; endometriosis (multiple); hepatocellular carcinoma; lung cancer; and myeloid leukemia (multiple). |
description |
---|
PREDICTED: DNA (cytosine-5)-methyltransferase 3A isoform X1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036984552.1 | False | 4447 | mRNA | 0.50 | 21 | 2110060 | 2199868 |
XM_036984551.1 | False | 4498 | mRNA | 0.50 | 21 | 2110060 | 2200906 |
XM_036984554.1 | False | 4390 | mRNA | 0.50 | 20 | 2110060 | 2200906 |
XM_036984548.1 | False | 4616 | mRNA | 0.51 | 22 | 2110060 | 2200907 |
XM_036984549.1 | False | 4613 | mRNA | 0.51 | 22 | 2110060 | 2200907 |
XM_036984550.1 | True | 4508 | mRNA | 0.51 | 21 | 2110060 | 2200907 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110529242 | LOC106591799 | coding | downstream | 13228 | 2061698 ~ 2096832 (-) |
selenoi | LOC106571011 | coding | downstream | 88434 | 1976310 ~ 2021626 (-) |
LOC110529244 | NA | coding | downstream | 139596 | 1968290 ~ 1975576 (-) |
tbx18 | LOC106571000 | coding | downstream | 281666 | 1807585 ~ 1828394 (-) |
armc1l | LOC106571055 | coding | downstream | 611360 | 1479450 ~ 1498700 (-) |
LOC110529239 | LOC105018054 | coding | upstream | 33078 | 2233985 ~ 2278437 (-) |
LOC110529255 | rps12 | coding | upstream | 746108 | 2947015 ~ 2957275 (-) |
LOC118965659 | NA | coding | upstream | 755717 | 2956624 ~ 2956701 (-) |
ccm2 | ccm2 | coding | upstream | 880305 | 3081212 ~ 3120444 (-) |
LOC118965483 | LOC100692480 | coding | upstream | 1512870 | 3713777 ~ 3823317 (-) |
G664788 | NA | non-coding | downstream | 15872 | 2093880 ~ 2094188 (-) |
G664782 | NA | non-coding | downstream | 38473 | 2071263 ~ 2071587 (-) |
G664781 | NA | non-coding | downstream | 38892 | 2070896 ~ 2071168 (-) |
G664778 | NA | non-coding | downstream | 43760 | 2065804 ~ 2066300 (-) |
G664739 | NA | non-coding | downstream | 44330 | 2008388 ~ 2065730 (-) |
G664864 | NA | non-coding | upstream | 41221 | 2242128 ~ 2242820 (-) |
G664868 | NA | non-coding | upstream | 49534 | 2250441 ~ 2252039 (-) |
G664869 | NA | non-coding | upstream | 69175 | 2270082 ~ 2270739 (-) |
G664871 | NA | non-coding | upstream | 78067 | 2278974 ~ 2279641 (-) |
G664872 | NA | non-coding | upstream | 80551 | 2281458 ~ 2281838 (-) |
G664733 | NA | other | downstream | 115530 | 1993889 ~ 1994530 (-) |
G664089 | NA | other | downstream | 671619 | 1437760 ~ 1438441 (-) |
G663235 | NA | other | downstream | 1679802 | 428191 ~ 430258 (-) |
G663215 | NA | other | downstream | 1723078 | 381322 ~ 388193 (-) |
G664763 | rab10 | other | upstream | 90495 | 2291402 ~ 2350981 (-) |
G665603 | NA | other | upstream | 1035981 | 3236888 ~ 3240052 (-) |
G665655 | NA | other | upstream | 1139149 | 3340056 ~ 3340960 (-) |
G665718 | NA | other | upstream | 1216206 | 3417113 ~ 3418288 (-) |
G665797 | NA | other | upstream | 1319883 | 3520790 ~ 3521623 (-) |