XLOC_025712


Basic Information

Item Value
gene id XLOC_025712
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49455762 ~ 49459924 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052786
GAACACTAAAGTAAGAGGCAGGAGGTGAACATGACAGGAGGGTTCAttctttctgacatttttttgATCATATAAACTGTAGTCTAAACATTTTACTGTATGTCCTAAATAATGGAAAAAACCAATAAAATATTGGATAAAAACACCACATTTAACCCTTTTCGTTTTGTCTGAAAATGAAATCAGCAGCACATTCATTTCtgtaattttaacaattaaaacttTATTGGAATGATACATGTTGCAAAATAttattctgtgaattttttttattttattctttttttgtcgTTTTTAAACATACTCGATGTGTCCTACGGGTATCCGTCAACTTCTCCAGAAGGTAAAATAATTAAGACTGTTAAAGGCAGAGAATATACAGTATTGTTTCCCGAAAAAAGGTACAATAGACTACACCATCACCATACCCATGTCGGGAGGAAAGAGACTCCTGTTATTGAAAATACACTTAGAAAATATGCAAAAAGTAAATCAAATGTTTTCTTCATGATctcctttttttaaaaagcaaatagaAGAGTGTAGGAAACTGGATGTGTACAAAGGCAAACTGTATCATGGActgatgcgcacacacacactcgcacacacgcaAAAAGATGATTGACAGTCAGTGTAAATGAGCAGATGAGTGTGAAACTGGAGTGACACCCACATATCTGAAAGCCAGGCAGACAGAGGGATGACTATCGGCAAGAGTGTCACGTATTTTCCATGCTCTGACCGACAAAAATTAAAGTGTGTAATGAAAGGTGCATTAGAACTCATTATATGCACCAGTTGAGGATAGTCTCAAGTTGCTTCTTCGAGAGCCTGCTGGGTAATCTAAAACGCAACAGAAGCAATCTATGAACACTGATTGTTTTTCGAAGCCGTAAGATGAAGCCGTTTCTCCTACAAACGAGGAGAGCGAATCTGCCAGCAATAGTCGAGAAGCAAGGATGACAAAACAGCAGCCCATTTCTAAAAAGGTACTTAAGCACCTATAATGATTAAAAACGGGTACGTTTATGGCTGCGATCCTGGCAGGTTGCGGTGACTTGTCGATGTAAATGAACAAACACTATATGATCAttaagggatggttcacccaaacatgaaaatgaCCTTACCAGAAACTGAAATCACTctcctttcttctgttaaacagaaaagtagatattttgaagaaagttggtgGCTTCTTCAAAAGCTGTGTAATATAtacttctgtgttcaacagaagaaactaaaACTGGTTTTGTACGAGTAAATGAtagcagaatttacatttttgggtgaactacccttttCTATTCGGTGTGAGATTGAGAACTCCAATACTAAAATGCATACAAAGTATAGCTCGAAACATATTTTTAACCTGGCACTAATCGTTTGTTGCAAACATTCAGCAAAATTAAGTTACACTAGTcatcataaaaaaagaaaacgtaACAAAACCAAAGATTTTGATTAATCGCACTGCTAGAATTTTCGTAAATTTCAAATTTTCCTTAATTGCGTTCCATTAGAAGAATGAAAACTCGCAAAAGCTGTCAGAATCAAATATAGCGTTCTTTCTGTTTGGTTACACCATCAAAATGAGGTTTACTTTAGTGCCCCTAGTGGCAGACGAACCACACTTCTCCTTTAACAACTAATATATTCTTTgaatcaacaacaaaataaaatctttGAAACGCACTACACAATATTGCACACAtctgaaaaaactaaacaatcatGGGGACGTGTTTTCAGATTGTCTTGTGTCCTACAAAAAACAAGATAGAAAGCAAACTCAATTCAATAAGCCGAATGAACGGAGCTGGTTGCAATCTTAAAGAAcgaattaacaaaaagaaaatgctgttCATTTACTGCCATTCATTAGAAAAGAGTGTTGGCTGAAATTCCAGGTTTTGATATCTTATTAAAGGGATAGATTACTATAAATTGAAAATTATGTCGCCATTTATTCTGTTTTACAACCTGACTTTTACAAAAGACTTTCTTctgatgaaaacaaaagaagatattttgaagaatgatgcaCATAGTCTTCCAATTATATAGAggggaaaaatattatatagaagtcaatgggtgccagctactAGCAACATtcaatgtattctttttttttttttaatcaaaagaaAGTTGTACAGGTTGTAAAACAGAGTAAATAACAGcagaatttttaattttgggtgaactatccctttaataagaTACCAAAAACTGCAATTTTAgccatagttcacccaaagttgAAAATTCTGCTATCATTTACATGTTTTACAACTTGTATGATGTTCCTCTGATGTAAACAAAGTAAGTTACTTTGAATGTTGCTagtagctggcacccattgacttctttAGCATTTTTTCCCCTACACTGGAAGACTATGGGCACCATcctccagcatttttcaaaatatcttcttttgtgttcaacagaagaaactcaaataggtttaaaacaacatttacatgAATTACATAAATGAACAATatcatttttgcatgaactacccctttaagtgaGCCATTACAAACACTTTCGAAGTCGTCATAAACATTCAGCAAAAATGAAATGAATCCATATGGCTCATGATGATACATTACAGTCTTATAAAGCAAAACAATCAGCCTGAGGCTGAAACTGAACACTATTTACAACATTACTACAACCTTTAATTGATGTAAACAAACAGTGTCAGCTTACATGAGAATAATGCGGCAGAAAACTCAGCTTCAGCAAACGGTTTGGgtttagaatgttttaaataagaTTCAGTTTCCTGCACAGACTGATCATTTCGCTATTCCAGAGCCACAGGTATCTATTTTGTTTATCCTGTATATTcgtttgacttaaaaaaaaataaaaaaaagccaatTGCCATTGATTTGATCAATTACCAAGGAATACAGCTTCAGCTTAAAATCTTCTTGTTCTGCTGAAGATTAACTACATTAAGTGCATTTTCTCAGTCTATATGAACAGCTAACTTTGTTTAAAGCAGAAATGGAGCTTGAATAGTGAAGCCTCAGAGAAGTTAAATTCATTGATAACCCACCAAACTTTCAAACAACTTGACTAGGCTGTTTAGAAGAGGGTTATTCTGTTTTCGGTAAGTTGGCCACTGGCAGGTGACATGGCagaaaactatatataataaaacaacatcATAATCCATCAGAAACCCAGTGTAACCACAGAAACAGTGCCTTCCTTTAACAGATTTAGTTTTCCTtaaaagcgtcatttttaaaaacGATCATCTGCATCACAAACCTTTGTGCTTGAACTATATCTTACATTTTATGTTCACCgatttctgaaaaaaatgtacCTTAGAATTAAGCAAAACTTAACAAACGGATGAAATAATGGATTTGGAGCATCGAGAATGCTCATACATGCTACAAATCTGCAATATAAAGTAAGTTACGGTTTCATCCGTGGCCGCTTTTTGAAGACAAACCACATTCCATCACTATGACAAGATTTTTAGGACTTGAAATACACGAAGCTAATCAATCCAAATCAAGTATTTTTATATTAACCGGCTGATTCTGCCTGATCTGAGAGCACTGCAGGAAACTGTACCAAATTAAAGggataacacacacaaaaagaaaaatctTCCTCATGTAGTTGAAACCTTTCTTCGGTTGAACACAAGATATTTTCAAGAAATACCCATCAAAATGCTTCCATAGAAGTTTACTACTcctctactatggaagtcaatgcgcGCCAGCAACCAGAAGTCTTCAAAATGTAATCTTTTGTGCTCAATGGAAGAAAGAAATGGCAGATttgatttttgtgtgaactatccctttaatacatgATGATAAATGATAGTGTGATGCTTGAAATCCAAATCGGAAATGGGTGATCTCTCGAAAACAAAACTCCTGCACAAGTTTCAGTTGGTTTGATTTGGTATTGAGTGCCAATATGTGCAttggaaattaaaataatgaaaagaaTATGTGAAAGAGTGGATAACTACAGAGCAAGGAC
>TCONS_00052787
ATAAACTGTAGTCTAAACATTTTACTGTATGTCCTAAATAATGGAAAAAACCAATAAAATATTGGATAAAAACACCACATTTAACCCTTTTCGTTTTGTCTGAAAATGAAATCAGCAGCACATTCATTTCtgtaattttaacaattaaaacttTATTGGAATGATACATGTTGCAAAATAttattctgtgaattttttttattttattctttttttgtcgTTTTTAAACATACTCGATGTGTCCTACGGGTATCCGTCAACTTCTCCAGAAGGTAAAATAATTAAGACTGTTAAAGGCAGAGAATATACAGTATTGTTTCCCGAAAAAAGGTACAATAGACTACACCATCACCATACCCATGTCGGGAGGAAAGAGACTCCTGTTATTGAAAATACACTTAGAAAATATGCAAAAAGTAAATCAAATGTTTTCTTCATGATctcctttttttaaaaagcaaatagaAGAGTGTAGGAAACTGGATGTGTACAAAGGCAAACTGTATCATGGActgatgcgcacacacacactcgcacacacgcaAAAAGATGATTGACAGTCAGTGTAAATGAGCAGATGAGTGTGAAACTGGAGTGACACCCACATATCTGAAAGCCAGGCAGACAGAGGGATGACTATCGGCAAGAGTGTCACGTATTTTCCATGCTCTGACCGACAAAAATTAAAGTGTGTAATGAAAGGTGCATTTGAGCCGTCATCTCCAGCCACCCATTTAAAACACTGCCATCTTAAGACAAACCCTTCAAATAAATCACGATCAAGCTCGAAGATGAGGGGAAAGCTCACACGAAAACCTGTACATTAGAACTCATTATATGCACCAGTTGAGGATAGTCTCAAGTTGCTTCTTCGAGAGCCTGCTGGGTAATCTAAAACGCAACAGAAGCAATCTATGAACACTGATTGTTTTTCGAAGCCGTAAGATGAAGCCGTTTCTCCTACAAACGAGGAGAGCGAATCTGCCAGCAATAGTCGAGAAGCAAGGATGACAAAACAGCAGCCCATTTCTAAAAAGGTACTTAAGCACCTATAATGATTAAAAACGGGTACGTTTATGGCTGCGATCCTGGCAGGTTGCGGTGACTTGTCGATGTAAATGAACAAACACTATATGATCAttaagggatggttcacccaaacatgaaaatgaCCTTACCAGAAACTGAAATCACTctcctttcttctgttaaacagaaaagtagatattttgaagaaagttggtgGCTTCTTCAAAAGCTGTGTAATATAtacttctgtgttcaacagaagaaactaaaACTGGTTTTGTACGAGTAAATGAtagcagaatttacatttttgggtgaactacccttttCTATTCGGTGTGAGATTGAGAACTCCAATACTAAAATGCATACAAAGTATAGCTCGAAACATATTTTTAACCTGGCACTAATCGTTTGTTGCAAACATTCAGCAAAATTAAGTTACACTAGTcatcataaaaaaagaaaacgtaACAAAACCAAAGATTTTGATTAATCGCACTGCTAGAATTTTCGTAAATTTCAAATTTTCCTTAATTGCGTTCCATTAGAAGAATGAAAACTCGCAAAAGCTGTCAGAATCAAATATAGCGTTCTTTCTGTTTGGTTACACCATCAAAATGAGGTTTACTTTAGTGCCCCTAGTGGCAGACGAACCACACTTCTCCTTTAACAACTAATATATTCTTTgaatcaacaacaaaataaaatctttGAAACGCACTACACAATATTGCACACAtctgaaaaaactaaacaatcatGGGGACGTGTTTTCAGATTGTCTTGTGTCCTACAAAAAACAAGATAGAAAGCAAACTCAATTCAATAAGCCGAATGAACGGAGCTGGTTGCAATCTTAAAGAAcgaattaacaaaaagaaaatgctgttCATTTACTGCCATTCATTAGAAAAGAGTGTTGGCTGAAATTCCAGGTTTTGATATCTTATTAAAGGGATAGATTACTATAAATTGAAAATTATGTCGCCATTTATTCTGTTTTACAACCTGACTTTTACAAAAGACTTTCTTctgatgaaaacaaaagaagatattttgaagaatgatgcaCATAGTCTTCCAATTATATAGAggggaaaaatattatatagaagtcaatgggtgccagctactAGCAACATtcaatgtattctttttttttttttaatcaaaagaaAGTTGTACAGGTTGTAAAACAGAGTAAATAACAGcagaatttttaattttgggtgaactatccctttaataagaTACCAAAAACTGCAATTTTAgccatagttcacccaaagttgAAAATTCTGCTATCatttacatgAATTACATAAATGAACAATatcatttttgcatgaactacccctttaagtgaGCCATTACAAACACTTTCGAAGTCGTCATAAACATTCAGCAAAAATGAAATGAATCCATATGGCTCATGATGATACATTACAGTCTTATAAAGCAAAACAATCAGCCTGAGGCTGAAACTGAACACTATTTACAACATTACTACAACCTTTAATTGATGTAAACAAACAGTGTCAGCTTACATGAGAATAATGCGGCAGAAAACTCAGCTTCAGCAAACGGTTTGGgtttagaatgttttaaataagaTTCAGTTTCCTGCACAGACTGATCATTTCGCTATTCCAGAGCCACAGGTATCTATTTTGTTTATCCTGTATATTcgtttgacttaaaaaaaaataaaaaaaagccaatTGCCATTGATTTGATCAATTACCAAGGAATACAGCTTCAGCTTAAAATCTTCTTGTTCTGCTGAAGATTAACTACATTAAGTGCATTTTCTCAGTCTATATGAACAGCTAACTTTGTTTAAAGCAGAAATGGAGCTTGAATAGTGAAGCCTCAGAGAAGTTAAATTCATTGATAACCCACCAAACTTTCAAACAACTTGACTAGGCTGTTTAGAAGAGGGTTATTCTGTTTTCGGTAAGTTGGCCACTGGCAGGTGACATGGCagaaaactatatataataaaacaacatcATAATCCATCAGAAACCCAGTGTAACCACAGAAACAGTGCCTTCCTTTAACAGATTTAGTTTTCCTtaaaagcgtcatttttaaaaacGATCATCTGCATCACAAACCTTTGTGCTTGAACTATATCTTACATTTTATGTTCACCgatttctgaaaaaaatgtacCTTAGAATTAAGCAAAACTTAACAAACGGATGAAATAATGGATTTGGAGCATCGAGAATGCTCATACATGCTACAAATCTGCAATATAAAGTAAGTTACGGTTTCATCCGTGGCCGCTTTTTGAAGACAAACCACATTCCATCACTATGACAAGATTTTTAGGACTTGAAATACACGAAGCTAATCAATCCAAATCAAGTATTTTTATATTAACCGGCTGATTCTGCCTGATCTGAGAGCACTGCAGGAAACTGTACCAAATTAAAGggataacacacacaaaaagaaaaatctTCCTCATGTAGTTGAAACCTTTCTTCGGTTGAACACAAGATATTTTCAAGAAATACCCATCAAAATGCTTCCATAGAAGTTTACTACTcctctactatggaagtcaatgcgcGCCAGCAACCAGAAGTCTTCAAAATGTAATCTTTTGTGCTCAATGGAAGAAAGAAATGGCAGATttgatttttgtgtgaactatccctttaatacatgATGATAAATGATAGTGTGATGCTTGAAATCCAAATCGGAAATGGGTGATCTCTCGAAAACAAAACTCCTGCACAAGTTTCAGTTGGTTTGATTTGGTATTGAGTGCCAATATGTGCAttggaaattaaaataatgaaaagaaTATGTGAAAGAGTGGATAACTACAGAGCAAGGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052786 False 4047 lncRNA 0.35 2 49455762 49459924
TCONS_00052787 True 3890 lncRNA 0.35 2 49455833 49459924

Neighbor

gene id symbol gene type direction distance location
XLOC_025711 tecra coding upstream 34488 49397115 ~ 49421274 (+)
XLOC_025710 NA coding upstream 321019 49134382 ~ 49134743 (+)
XLOC_025709 BX649515.1 coding upstream 323285 49132341 ~ 49132477 (+)
XLOC_025708 zgc:123284 coding upstream 355306 49097775 ~ 49100456 (+)
XLOC_025707 zgc:112146 coding upstream 376444 49074008 ~ 49079318 (+)
XLOC_025713 NA coding downstream 30630 49490554 ~ 49506172 (+)
XLOC_025714 crb3a coding downstream 61182 49521106 ~ 49548229 (+)
XLOC_025715 NA coding downstream 105333 49565257 ~ 49624678 (+)
XLOC_025716 NA coding downstream 293844 49753768 ~ 49760696 (+)
XLOC_025717 zgc:103625 coding downstream 609280 50069204 ~ 50075190 (+)
XLOC_025429 BX649540.1 misc upstream 19206726 30248739 ~ 30249036 (+)
XLOC_025704 NA non-coding upstream 449097 48998891 ~ 49006665 (+)
XLOC_025703 NA non-coding upstream 547932 48894467 ~ 48907830 (+)
XLOC_025701 NA non-coding upstream 825991 48618161 ~ 48629771 (+)
XLOC_025719 NA non-coding downstream 826856 50286780 ~ 50288488 (+)
XLOC_025721 BX649397.1 non-coding downstream 1077203 50537127 ~ 50552748 (+)

Expression


Co-expression Network