XLOC_025714 (crb3a)


Basic Information

Item Value
gene id XLOC_025714
gene name crb3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49521106 ~ 49548229 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050575
CGTTCACTCAATACAACTGGTAAATACCAGGCGCACAAGACCACCTTTGAAAAAAGCAGGACAGGATCTCGAAGGACAATGCGTTATTATGCGCAGGACGCCGGGGTGTCGAGCTAGATTCGGTTTAAATACTTCATTTCACCAGTAAGGTGAGGCGGAAGCGACCTGTGGTGGATCTACTGGACATTTAGTTTACATACAGTCGGAAAATATTCGAGGATTATGAAGGTGAACATACAGCTTGCAAGAGGCAGATAGGACTGTTTTTATTCTTTGATCCTGGAGATGATTTATTGATCGCTCTGCTCCACCCTACCCGGAGCATCAGCCCCTTCTGGTTGAGGGTAGAGGTGCAGATTGAGCCCATCCCGGAGATGATCCAGCAGGTTGGGCTGTTGGCAGGGAGTTTTCTGCTGCTGCTCGTCAGGAATGTTTCGGCGCaggggGAAAATTCCACAATGTCCAGCTTTACGACATCCTCCCCAGAAAGTACGGGACCTAATATTGTGGCCATCGTTGTACCAACTGTGGTGCTGGGCCTGCTGGCTATTTTGACGGCGGTTCTGGTGTTTCTGTTCTGCGTGGTGAAAAAGAAGAGACAGACAGAGGGCACGTATCGACCCAGCGCAGAGGAGCAGACGGGAGCCAGAAGTGTAGAAGCGCCAGACGCCCTCAAACTACCCAAAGAGGAAAGACTGATTTGACGCAGTGGTTTATGTCTAACCCGCAGCACGTGATAATGGTGACTCAATCCCTAAACGGATAAACATTAACCAAAACACACTGAAGGCACAATGTCCAAACTTAGCCATGTGTTGTGGCTAAACAAAGTGAGTTTGACTACTATATGAAACTTGAAGGAATTCATATCTTCTACTCTCAACATATTTTAACACGCCTTTGACAATCATATTTTTAGATTGGCTTTTCTCAGAATGCACATTTTATGCTGTGCTTACTGTTGCTTTACACACTTAAACGCTGATGTTTGTGTGTGGTGATATTTTTTAAAGGTGGAGTGTGCCGTTTCTGCCCCTAGTGGCACAAAAAGGAATTGAAATCTGTTTGTTTTTGCATCTAGGAGTTTAACAGCATCAGCTCAACCAGTGGGGGGAGTTTGGGGACATGACTATCTGTCTATCTGACTAATAATTTtaccatcattttttttaaagaccattatttttgcttttatgtTTGCTGGTGTTAGATATTGCACACTTCACCTTCCAatatacacagtgctcagcataaaagagtacaccccatttcgaaaatgaatatttttatccattttcagtgaacaaaactgatttatcaaacagaaacatttatcaaaataatattttagatacaGAACATCTTTATGAAtgtaaagataatacatttaaattgatgcaaatattgcaaaaataagttACAAATTACAACATTTCTGcaaacttttatatattttttgtttctttagttttttgctattgttgaaaaatgtgtttaatatttttcccctACAAAAGTTTGGGATACtcattttggaccgttatcataagttattttgttagatatgctccagatttggcttcagcactgactgAACTAATGTATATGATGGAAAATATTCATGTAAATGAGAGATccgtgaggggtgtacttatatatgctgagcactgtatttatttacaggtgaaggcaaaattattagcattCCTGTGAAGcttttaattctgttttttttttttttttttttttaatatttcccaagtgtggttaaatgtaattaaatttttaaacaaaataaggcctatcatacacccgccacaataaggtgcaagaccggtttgcgccatgttgtttaaatggcaaatccatttgtgccactttgtggactcgtgTGCCAGTCTTGGATGGAGGTGTGTTCAGGTGCATTGTGCtttactattttaaggaactaaaatagactgtgcaaatGACCAGCTGCAAGCATGTCTCTGTCCAGCGCAGAGTTAGTTGTGCGACTTAAAcgtgtacacattgcttaatagacACAGGATGtatagcaatacacaaatatctttacagttttcagtttattcattacaacttgcttttgtatagttattattattaattatatgcatagttatatttgttttattaaaaacaagtttagatttgtccacctgtcgggttttgcaCCATATGGGGCAAAAGAATAGGATAGAACTCAgtgttttgaccacactttattatcattgttcatttatttgtttgctggaaattagaactgaatttagaaatagttttaaaacaaagtttttgcacttaactaacaaaattaaatatgtaggctgatggatgtcttagTGGAGcacgtacaacactgtttccttatccacaaaagtgaagaagtgaagagaaagagaaagtaaagaggcagaatAAAGGAGACTCATTCTTC

Function

symbol description
crb3a Acts upstream of or within inner ear auditory receptor cell differentiation and regulation of non-motile cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; gut; otic vesicle; and photoreceptor cell. Orthologous to human CRB3 (crumbs cell polarity complex component 3).

GO:

id name namespace
GO:1902855 regulation of non-motile cilium assembly biological_process
GO:0042491 inner ear auditory receptor cell differentiation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060610-2 Acts upstream of or within inner ear auditory receptor cell differentiation and regulation of non-motile cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; gut; otic vesicle; and photoreceptor cell. Orthologous to human CRB3 (crumbs cell polarity complex component 3).

Ensembl:

ensembl_id ENSDARG00000102948

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050575 True 2458 mRNA 0.38 4 49521106 49548229

Neighbor

gene id symbol gene type direction distance location
XLOC_025713 NA coding upstream 14934 49490554 ~ 49506172 (+)
XLOC_025712 NA coding upstream 61182 49455762 ~ 49459924 (+)
XLOC_025711 tecra coding upstream 99832 49397115 ~ 49421274 (+)
XLOC_025710 NA coding upstream 386363 49134382 ~ 49134743 (+)
XLOC_025709 BX649515.1 coding upstream 388629 49132341 ~ 49132477 (+)
XLOC_025715 NA coding downstream 17028 49565257 ~ 49624678 (+)
XLOC_025716 NA coding downstream 205539 49753768 ~ 49760696 (+)
XLOC_025717 zgc:103625 coding downstream 520975 50069204 ~ 50075190 (+)
XLOC_025718 rsad1 coding downstream 607016 50155245 ~ 50269145 (+)
XLOC_025719 NA coding downstream 738551 50286780 ~ 50288488 (+)
XLOC_025429 BX649540.1 misc upstream 19272070 30248739 ~ 30249036 (+)
XLOC_025704 NA non-coding upstream 514441 48998891 ~ 49006665 (+)
XLOC_025721 BX649397.1 non-coding downstream 988898 50537127 ~ 50552748 (+)
XLOC_025723 NA non-coding downstream 1247092 50795321 ~ 50796217 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G168427 NA non-coding CI01000033 null 1350026 ~ 1350398 (+)