XLOC_025717 (zgc:103625)


Basic Information

Item Value
gene id XLOC_025717
gene name zgc:103625
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50069204 ~ 50075190 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050577
acaagatattttatgAAAACCTGTAATTGTAAAcaacaaaatgcatttaatttaaggattctgcaaaaaaaaaaaaaaaaggctcagGCAAGATTGAAATAATAGGAAATGAATATGCGTAATTTTAGACCAGGTGAAAAACAGGTTTATTGAAGAATTCCTGGAAAACTAAGTAAACTTAAATCTTGcaaagatataaaaaataaacttagttgagtcactttagacccatgttgtgcatcaaagggttaatcaGAATCAATAATTGTCTGTGGTATGATAAGGAGAGTGATGAATGATAAGGAATTCTTTGGTTATACAGAATGTATATAGGAGGAGCAGACAGAAGCCTCTTATTCAGGTAATCTCATGATCCATCTGTCGGTTCTTCAGTCCACACATGACCAATGCACTGGATGCACCTCACCGTACAGCAGCACAGCACAGTGTAAGTTCTGACATATGGAATATGGCCCttgaatataattgtttaatattcaGCAAAAGTACATTAAATATCCTTTATGCAGTAGATCATGCTGCTCTCACCAGCAGCTGAGCGGAGTCAGGGCAGTTTACTGTCAGTAATCTGGGAGATACTGAAGGATCAGTCTCATCGAGAGCTGTTTGGCCTTGAGCTGGGATCTGGCACAGGGCAGCATGTGGTGCATTTTGCTCAAGAAATGCCATTTGTGACATGGCTACCTTCAGACACCAAGGAGGAATCACGAAACAGTATCAGAGCTTACATTGAGGCCACAAAGGCAAAAACAGTGCTGGAGCCGGTGCATCTGGATGCCAGTGAACCCTGGGACAAATGGGCAGGACTTCCACAAAACTCCTGCGATATAATACTAGCAATCAACCTGCTTCAATACACCCCCTTCAGCACTGCAGAGGGTGTTTTTAAAGGATCTGGAAAGATACTGAAACAAAATGGCCTTTTAATGACTTATGGGCCATACGCTATCAATGGAACCATCACCCCAATCTGCAATGAACAGCTGGACGAGACTTTACGCCAGATGAATCCTGAGTGGGGTCTACCGGACATCGATGTGCTCAGACAACTGGCCTTCAGTAATGGGATGAGAATGGAACGAATGATTGAGATGCCTGAGAGTAACAAATGCCTTGTCTTCAGAAAACTGTAG
>TCONS_00050578
AGTCCACACATGACCAATGCACTGGATGCACCTCACCGTACAGCAGCACAGCACAGTTAGATCATGCTGCTCTCACCAGCAGCTGAGCGGAGTCAGGGCAGTTTACTGTCAGTAATCTGGGAGATACTGAAGGATCAGTCTCATCGAGAGCTGTTTGGCCTTGAGCTGGGATCTGGCACAGGGCAGCATGTGGTGCATTTTGCTCAAGAAATGCCATTTGTGACATGGCTACCTTCAGACACCAAGGAGGAATCACGAAACAGTATCAGAGCTTACATTGAGGCCACAAAGGCAAAAACAGTGCTGGAGCCGGTGCATCTGGATGCCAGTGAACCCTGGGACAAATGGGCAGGACTTCCACAAAACTCCTGCGATATAATACTAGCAATCAACCTGCTTCAATACACCCCCTTCAGCACTGCAGAGgtctgttgaggcaagttggagctaaaatctgcaggacaccaggaCTAAGTTTGGATATTCCTGATGTATATGaaccacacagacacatgcagTATAAGCACTCTGTGTTTGccaaacaccacttccaacagcaaactGTTTCCAagaggtctcccatccagATGAATGGAATGTCCAGAGGAGTCTGTTTATGTTTTACTTTGAAAGAGATAACAGCAAGACATGCTATGCCAAGActgagGGTGTTTTTAAAGGATCTGGAAAGATACTGAAACAAAATGGCCTTTTAATGACTTATGGGCCATACGCTATCAATGGAACCATCACCCCAATCTGCAATGAACAGCTGGACGAGACTTTACGCCAGATGAATCCTGAGTGGGGTCTACCGGACATCGATGTGCTCAGACAACTGGCCTTCAGTAATGGGATGAGAATGGAACGAATGATTGAGATGCCTGAGAGTAACAAATGCCTTGTCTTCAGAAAACTGTAGGATCTCCGTCCAGAACCAGAAGACGCTTCATCTTCCATATTTACATTCTGCCTGTGCTTTAAACACACAAACTGAACAGACTGCACAAACATATAATAAACAAGAAAAGAAACATTTCCACTAATGCGTGTGACCAATAAAAGAACAAGATTTATTAAATA
>TCONS_00050579
AATGCACTGGATGCACCTCACCGTACAGCAGCACAGCACAGTGTAAGTTCTGACATATGGAATATGGCCCttgaatataattgtttaatattcaGCAAAAGTACATTAAATATCCTTTATGCAGTAGATCATGCTGCTCTCACCAGCAGCTGAGCGGAGTCAGGGCAGTTTACTGTCAGTAATCTGGGAGATACTGAAGGATCAGTCTCATCGAGAGCTGTTTGGCCTTGAGCTGGGATCTGGCACAGGGCAGCATGTGGTGCATTTTGCTCAAGAAATGCCATTTGTGACATGGCTACCTTCAGACACCAAGGAGGAATCACGAAACAGTATCAGAGCTTACATTGAGGCCACAAAGGCAAAAACAGTGCTGGAGCCGGTGCATCTGGATGCCAGTGAACCCTGGGACAAATGGGCAGGACTTCCACAAAACTCCTGCGATATAATACTAGCAATCAACCTGCTTCAATACACCCCCTTCAGCACTGCAGAGGTATGATGTCAATATACATGCATATTACCTATAACATACATTTACACTGATCAGTCACAACATCAAAACCACTGAAGTGATATGCTGCTGAAGTAATAAA
>TCONS_00050580
AATGCACTGGATGCACCTCACCGTACAGCAGCACAGCACAGTTAGATCATGCTGCTCTCACCAGCAGCTGAGCGGAGTCAGGGCAGTTTACTGTCAGTAATCTGGGAGATACTGAAGGATCAGTCTCATCGAGAGCTGTTTGGCCTTGAGCTGGGATCTGGCACAGGGCAGCATGTGGTGCATTTTGCTCAAGAAATGCCATTTGTGACATGGCTACCTTCAGACACCAAGGAGGAATCACGAAACAGTATCAGAGCTTACATTGAGGCCACAAAGGCAAAAACAGTGCTGGAGCCGGTGCATCTGGATGCCAGTGAACCCTGGGACAAATGGGCAGGACTTCCACAAAACTCCTGCGATATAATACTAGCAATCAACCTGCTTCAATACACCCCCTTCAGCACTGCAGAGGGTGTTTTTAAAGGATCTGGAAAGATACTGAAACAAAATGGCCTTTTAATGACTTATGGGCCATACGCTATCAATGGAACCATCACCCCAATCTGCAATGAACAGCTGGACGAGACTTTACGCCAGATGAATCCTGAGTGGGGTCTACCGGACATCGATGTGCTCAGACAACTGGCCTTCAGTAATGGGATGAGAATGGAACGAATGATTGAGATGCCTGAGAGTAACAAATGCCTTGTCTTCAGAAAACTGTAGGATCTCCGTCCAGAACCAGAAGACGCTTCATCTTCCATATTTACATTCTGCCTGTGCTTTAAACACACAAACTGAACAGACTGCACAAACATATAATAAACAAGAAAAGAAACATTTCCACTAATGCGTGTGACCAATAAAAGAACAAGATTTATTAAA

Function

symbol description
zgc:103625 Orthologous to human METTL26 (methyltransferase like 26).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-116 Orthologous to human METTL26 (methyltransferase like 26).

Ensembl:

ensembl_id ENSDARG00000038770

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050577 False 1154 mRNA 0.41 6 50069204 50075029
TCONS_00050578 False 1083 nonsense_mediated_decay 0.45 9 50069595 50075190
TCONS_00050579 False 593 lncRNA 0.45 2 50069610 50070290
TCONS_00050580 True 825 mRNA 0.46 7 50069610 50075188

Neighbor

gene id symbol gene type direction distance location
XLOC_025716 NA coding upstream 308508 49753768 ~ 49760696 (+)
XLOC_025715 NA coding upstream 444526 49565257 ~ 49624678 (+)
XLOC_025714 crb3a coding upstream 520975 49521106 ~ 49548229 (+)
XLOC_025713 NA coding upstream 563032 49490554 ~ 49506172 (+)
XLOC_025712 NA coding upstream 609280 49455762 ~ 49459924 (+)
XLOC_025718 rsad1 coding downstream 80055 50155245 ~ 50269145 (+)
XLOC_025719 NA coding downstream 211590 50286780 ~ 50288488 (+)
XLOC_025720 gas7a coding downstream 235494 50310684 ~ 50420221 (+)
XLOC_025721 BX649397.1 coding downstream 461937 50537127 ~ 50552748 (+)
XLOC_025722 gsg1l2a coding downstream 527676 50602866 ~ 50781505 (+)
XLOC_025429 BX649540.1 misc upstream 19820168 30248739 ~ 30249036 (+)
XLOC_025710 NA non-coding upstream 934461 49134382 ~ 49134743 (+)
XLOC_025723 NA non-coding downstream 720131 50795321 ~ 50796217 (+)
XLOC_025724 NA non-coding downstream 733447 50808637 ~ 50809193 (+)
XLOC_025725 NA non-coding downstream 936099 51011289 ~ 51023057 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000334_00231737_00235362 NA coding CI01000334 null 231650 ~ 235362 (-)