XLOC_025719


Basic Information

Item Value
gene id XLOC_025719
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50286780 ~ 50288488 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052792
GCGCAGCCAGAGAAGATCGCTGGTGGGCGGTATAGAAAAGGCTGAAGCAGGAAGTGAGGAGGGAAGCGTCTGCCACAACTGATAGCAGCGAGGGCAATCTGAtgaaaggggaaaaaaacaggaaACAGTCCAAACCACAAAATCGAAATCAAAAAACTGGCACTGGAGTCAAAATGGATACAAGACAGGACACGATCTAAGAGGCCACCGCATGAGCTTGTTCCTGCTCACCCAATCACCGCTCTCGCTCACAAACCACCTCCATCCAATCCCGTGAACCCTCACCGGCCTTCTCGTCACCTGCATTAGTTCCCCATCATCAAGGACACTATAAAAGCTCACCTAATCCTCTCACTCATCGGCTTGCATTAAAGTTGGATGGTTGTCCTCACGTTCGCTACTTTGTCTTCCCCTCTTCTTCCATGGATGTTCCTTATGTGTCTTCGAATGCTTCACATTGATCAAGGGAAGTGAATATTCTCATATGGTGTTTACTAGAAGATCTGCTATTTATCTGATGAACTGTGTGTCTGTACATTCACCCACGGATGTTCTTTGTATGCCTTCAGATGCTTCACACTAAGGGAAGTGCTTGCACCTATATGGTGTTTACTAGAAGATCTGCTATTTACctgatgaactgtgtgtgtataatCACCTGCTGATGTTCTCACGAACAAACTGTATGTAAGATTACTAACATCAGATGTTTACATTACTAAGCTGTTAAAGAAGATTGCTAACCATACTGACACCACTCTCTTGCTTCCTCTCACTGATTAAGAGactttgttttgaataaaacGATAACGTTCCTTGTCTACCAGTGTGACAGTCATAGGCTCTATTTAACATTACACTGAATGATATGGTTTTTTCAGCTGTATCAAAATATTACAGCTAAAATGGTTTGCTTTTAATAGCTCTTCACCATAGAAATCTAGATGCCAGTTCAGGGTGCTGACCCACCAAAGACTAGAGATTAGAGATTAAGCAATGCATGTTTGTGGGAGCAACTTATTTATTGTTACCACTCAACAAACTGGTTTGTATGACACttgtattgcattttttttctaaaataaaaacaatgaaattaataatatataattaataacaatCGAACAAAATTACAACAGTAAAATGTAGtcaataacacaaaacaaaacattaaacttgATAATCTAGTATTGTGCAAATG
>TCONS_00052793
GTGAGGAGGGAAGCGTCTGCCACAACTGATAGCAGCGAGGGCAATCTGAtgaaaggggaaaaaaacaggaaACAGTCCAAACCACAAAATCGAAATCAAAAAACTGGCACTGGAGTCAAAATGGATACAAGACAGGACACGATCTAAGAGGCCACCGCATGAGGTAAACACACTAACGACCCGGTACAAGACAATGACAGAGAGAAGAATAAATAGGGAGACTAATAAGGCTAAGACTAGAGACAGGTgcgaataatgaaataatgatctAATGAGTAACCTGATAAGTGGGTGGAGTGAGGCAGTGGAGCACATGGCGAGCTGTCAAAACAATGCCATGTGCTacgagaaaacaaacacaaatgactGTGACAACATGCAGGTGACAGACCATGACACTTACACCTTAACAAAGAAAAAGTTAGGGACTTTTAATTTATTTCCAGGTGCATTTTCAAATTttgcattttctttattttttgcatggACTTCTTTATCAAATTATATAAGATGCTATTTATTACAATATTCTATAGCACAGCATAGCATGTAGTATAGTATTCTAAAGAAAATTTTAATGATATGTTTGCTCAAAGTCCATTATGCACAGAAATGCTGCCTCTTTTAAATATCATCTATTCACATCTAAGATGTCATTGTCACATCCCCAGCTTGTTCCTGCTCACCCAATCACCGCTCTCGCTCACAAACCACCTCCATCCAATCCCGTGAACCCTCACCGGCCTTCTCGTCACCTGCATTAGTTCCCCATCATCAAGGACACTATAAAAGCTCACCTAATCCTCTCACTCATCGGCTTGCATTAAAGTTGGATGGTTGTCCTCACGTTCGCTACTTTGTCTTCCCCTCTTCTTCCATGGATGTTCCTTATGTGTCTTCGAATGCTTCACATTGATCAAGGGAAGTGAATATTCTCATATGGTGTTTACTAGAAGATCTGCTATTTATCTGATGAACTGTGTGTCTGTACATTCACCCACGGATGTTCTTTGTATGCCTTCAGATGCTTCACACTAAGGGAAGTGCTTGCACCTATATGGTGTTTACTAGAAGATCTGCTATTTACctgatgaactgtgtgtgtataatCACCTGCTGATGTTCTCACGAACAAACTGTATGTAAGATTACTAACATCAGATGTTTACATTACTAAGCTGTTAAAGAAGATTGCTAACCATACTGACACCACTCTCTTGCTTCCTCTCACTGATTAAGAGactttgttttgaataaaacGATAACGTTCCTTGTCTACCAGTGTGACAGTCATAGGCTCTATTTAACATTACACTGAATGATATGGTTTTTTCAGCTGTATCAAAATATTACAGCTAAAATGGTTTGCTTTTAATAGCTCTTCACCATAGAAATCTAGATGCCAGTTCAGGGTGCTGACCCACCAAAGACTAGAGATTAGAGATTAAGCAATGCATGTTTGTGGGAGCAACTTATTTATTGTTACCACTCAACAAACTGGTTTGTATGACACttgtattgcattttttttctaaaataaaaacaatgaaattaataatatataattaataacaatCGAACAAAATTACAACAGTAAAATGTAGtcaataacacaaaacaaaacattaaacttgATAATCTAGTATTGTGCAAATG

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0098687 chromosomal region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052792 False 1201 lncRNA 0.40 2 50286780 50288488
TCONS_00052793 True 1656 lncRNA 0.38 1 50286833 50288488

Neighbor

gene id symbol gene type direction distance location
XLOC_025718 rsad1 coding upstream 17635 50155245 ~ 50269145 (+)
XLOC_025717 zgc:103625 coding upstream 211590 50069204 ~ 50075190 (+)
XLOC_025716 NA coding upstream 526084 49753768 ~ 49760696 (+)
XLOC_025715 NA coding upstream 662102 49565257 ~ 49624678 (+)
XLOC_025714 crb3a coding upstream 738551 49521106 ~ 49548229 (+)
XLOC_025720 gas7a coding downstream 22196 50310684 ~ 50420221 (+)
XLOC_025721 BX649397.1 coding downstream 248639 50537127 ~ 50552748 (+)
XLOC_025722 gsg1l2a coding downstream 314378 50602866 ~ 50781505 (+)
XLOC_025723 NA coding downstream 506833 50795321 ~ 50796217 (+)
XLOC_025724 NA coding downstream 520149 50808637 ~ 50809193 (+)
XLOC_025429 BX649540.1 misc upstream 20037744 30248739 ~ 30249036 (+)
XLOC_025713 NA non-coding upstream 780608 49490554 ~ 49506172 (+)
XLOC_025712 NA non-coding upstream 826856 49455762 ~ 49459924 (+)
XLOC_025710 NA non-coding upstream 1152037 49134382 ~ 49134743 (+)
XLOC_025725 NA non-coding downstream 722801 51011289 ~ 51023057 (+)
XLOC_025726 NA non-coding downstream 1128934 51417422 ~ 51446996 (+)

Expression


Co-expression Network