LOC110529308 (LOC106571096)


Basic Information

Item Value
gene id LOC110529308
gene name LOC106571096
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 7913950 ~ 7923624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611430.2
ACTGCCAATATCAATCCCATAATCCTTGCAAACGGTGTATTCATTTGAATGGCTCTGAACGTGAATTCAATTTGAAAAGCTAGCCAGACATTTGTTGCAGGTTTATACTTTACAGGTTATTCCTTACTACTTCCACGTGGACATACATTGCTGAGGAGAGTCCTGACATTTCGCAAAATGTGACGTGTCTCTTACTATGGCCTCTGGAAGTCATGATAGGCAAAGCAGGGAATTCCAACAGCTCAACCAGGACAAACCTCATGAATTTCTCCATCACATCAGCAACCACTCTGCAGCTGACCAGAATATGAAGGAGGTGTTTGTTTTAATTAAGGAAGAAATAGATAAAGACCGATTCCCCGTGAGTCGCGGTGCACTCATCTCCGGCAGAGCAAAACAAGTGTCTGTGTGCAACAAGAGAAAGTGTTCGTTGTCGCGTCACAGTGTAGTGGTGAGCTCCGGCGTGAGCCACAGAGAGCCCCCCGCAGGTCGGGCTGTCTGTGACATGGCCAACAAGGAGAATGAACTGACCTGCCCAGACGAAGTGCAGGCCATACATTACAGTGACAACTGCGTTTTCCCTGTGAACTCTGTAGCAGAAGCTGGCTCCAAGATGGCAGCGCCGGGAAACAAGTACGGTGATCACTTCACTGAGCTATCGAAGGATCATGACGCAATGACACACGTGCTTTTTGGGAGGAATCTCCGATTAAATGTAGCTCTGACACTATGGCGAAGAAACGCCAGCGAACTAGTGGCATACTTGATCAGAATTGAAGACACGGGCGTGCTTCTTGACTGTCTGCCAGTAATAACTAAAAACCTTCAAGACGAAGTGCCGTGCATATCACTGGGCTGCTGTGTAGACCTCCTGCCACAAGTCAAAACCATCCTCGCCAGTAAATATGAAGAACACTTGATTGTGGGTTTACACTGGATTCAGTCTGTCATTAAGAAATGGTGGCCAGAACTCTCCACAAACAGCAATAGACTGCATGACAGCTGCTCAGAGGACAGGAACCTCCAAGTCTTGAAGCAGCAGCTGTTGGAATTGTGGGAAGAAGGACCCCGGTTATGTTTAGTTCCAGGAACTACAGGAGAGATGGCAAAGgcCATTGAGTCTTACTTGTTACAACTACGCTGACCAATCAGTCAATGTAGCACTGAGGAAGTGACCACTACTGCCGGAGAgagctgtgtttttttttatcgttacctggagccagtgacaATAAAGACAAGACAATGCTCCACACACCGACAGGAACACTGTTCTATTATATGGGGATTGATGACCTGAGCAATTCAGACAACTTCCGCACTCAATCACAGCTGCAGAGACACTAacaaaaggagggaggagagactcAAGGGGAGGAAGGAGCCTTTTTCTCTTTGCAAAACCAGGAATGACTACTTCACATTGAAGTGGATCGACGTCTTGCGACGGGGCAAGACTTCAGTCGACCTCCATGAGACTTGGCAACAGAGGCACCTTATTTCTTATATAGGGCACGTTTTaccggaatagggtgccatttcggatgcGCGCTGAGACTGGGTCTTGGGCCGCTCTGTGACGTGCCAAGTTCTCTCTCCACCACAGCCGCTCTTCCTCGTCATGGTGTGTAAAACCTGCACAGATCATGGATGTAAAATAATGCATGCCCCTTCCTAGTTTTAATATTTCTCGATTCTTCCAATCATGTCCTGAATGAAGAACTTGAAAACTGCTGTGGTCTTAAGTTATGAGAGCTCTTCTTGTTGTTTTTTCCTGTTCATGAATGATGTTTGACTGTAAAAGTGTAAATACAGTGATTCTTTTAATCATCTTtaaaataaatttgctaaaaatcTG
>TU762812
GCTCTGAACGTGAATTCAATTTGAAAAGCTAGCCAGACATTTGTTGCAGGTTTATACTTTACAGGTTATTCCTTACTACTTCCACGTGGACATACATTGCTGAGGAGAGTCCTGACATTTCGCAAAATGTGACGTGTCTCTTACTATGGCCTCTGGAAGTCATGATAGGCAAAGCAGGGAATTCCAACAGCTCAACCAGGACAAACCTCATGAATTTCTCCATCACATCAGCAACCACTCTGCAGCTGACCAGAATATGAAGGAGGTGAGTGGATTTCCAAGGTGGGAAGTGTGCATCCCAGTTCTCCACttgttccccccccccacacagtgTGCACTTGCACAATCCCTGTCATTGAAATAAAAGCATTCAATTGTTGTAAGCATTGACTAGAAAGAGTTTTCACCGTTTGTTAAATCTGACGCTTGATCGTGTAAATGCGCACACCGTGTGGAGAATCGGGATCACACAGTGATTCTGTTATGAATATGAACCAAGAGGTGTTTACTAACCTTTAGTCAAACATTTCTCTTTTTTAAAGAAAACTGTACGTTTTTGTTATCACTTATTCCTTTTTGTTTTAGGTGTTTGTTTTAATTAAGGAAGAAATAGATAAAGACCGGTGAGTTTTCCAGTTCTATGTAGATCTAATGCACAAGCTGCCTTTCCTAGCACTGCGGTTAACGGCTGCTCAGTCACTGGGGAAGATCTaaccatggaaacacatttcccATCTTTTTCCCCAAGCACTTCTCCAAACACTACCATAGTGTCTAGTC

Function

NR:

description
KATNB1-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611430.2 False 1858 mRNA 0.46 10 7913950 7923624
TU762812 True 780 lncRNA 0.42 2 7914001 7920560
Loading

Neighbor

gene id symbol gene type direction distance location
gpr176 LOC106571060 coding upstream 377021 7515258 ~ 7536929 (+)
LOC110529173 LOC106571059 coding upstream 416811 7476858 ~ 7497139 (+)
LOC110529303 LOC106608191 coding upstream 512540 7381850 ~ 7464260 (+)
LOC118965596 NA coding upstream 530378 7382121 ~ 7383572 (+)
fntb LOC106571088 coding upstream 587018 7295388 ~ 7334724 (+)
LOC110529309 LOC106571095 coding downstream 5735 7929359 ~ 7934995 (+)
LOC110529313 LOC106571113 coding downstream 360256 8283880 ~ 8341125 (+)
LOC110529318 LOC106571115 coding downstream 461826 8385450 ~ 8393449 (+)
LOC100136137 LOC106571105 coding downstream 478600 8402224 ~ 8423584 (+)
LOC110529321 LOC106571114 coding downstream 818915 8742539 ~ 8757466 (+)
G669636 NA non-coding upstream 807 7912896 ~ 7913143 (+)
G669634 NA non-coding upstream 3281 7910074 ~ 7910669 (+)
G669632 NA non-coding upstream 8348 7905252 ~ 7905602 (+)
G669631 NA non-coding upstream 9551 7904176 ~ 7904399 (+)
G669623 NA non-coding upstream 16834 7896890 ~ 7897116 (+)
G669641 NA non-coding downstream 3435 7927059 ~ 7927960 (+)
G669642 NA non-coding downstream 4445 7928069 ~ 7928461 (+)
G669646 NA non-coding downstream 16313 7939937 ~ 7940163 (+)
G669687 NA non-coding downstream 86453 8010077 ~ 8012444 (+)
G669657 NA non-coding downstream 89114 8012738 ~ 8089556 (+)
G668626 NA other upstream 914644 6998228 ~ 6999306 (+)
G668628 NA other upstream 922342 6989854 ~ 7076589 (+)
G668649 NA other upstream 942346 6971079 ~ 6971604 (+)
G668368 NA other upstream 1467505 6445880 ~ 6446445 (+)
G668334 NA other upstream 1500863 6412000 ~ 6413087 (+)
G670034 NA other downstream 446500 8370124 ~ 8376409 (+)
G670169 NA other downstream 543091 8466715 ~ 8467460 (+)
G670939 LOC106571120 other downstream 1370871 9294495 ~ 9352851 (+)
LOC110529331 LOC106571120 other downstream 1429299 9336069 ~ 9366106 (+)
G670992 NA other downstream 1602099 9498702 ~ 9613040 (+)

Expression

LOC110529308(LOC106571096) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
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LOC110529308(LOC106571096) Expression in each Bioproject

Bar chart with 21 bars.
LOC110529308(LOC106571096) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network