XLOC_002572


Basic Information

Item Value
gene id XLOC_002572
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7238244 ~ 7253898 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005996
ctgaaatctgctggttggtggctctccagaaacagggttggccacccctgcactacagTTTGACCTGTTAGACAGCATAATGTAGATTGCAactatgaagtttatttataaggatagtgtctattttaaatatttataaaatctgagagacagcgcgtctgcatccatcagcctgtcatcaAGCGGAGCAAAGAAGGTGAACGATGTCTATCCATAAGATGGCGACTGAGACTACATAATGAGCTACATCTGatcaaaacaatataatattgGACTGTGTGTCCAGACATTTAGCGACTGTCCAACGCACGCATGTGAAAGTGAAGTAAACCCACACAGATGTCCTTCTGTCCATCAGCTCCTTCTCCCTCCTCGACTGCGTCTCCATCATCTGAAGAGCATCTCTGCAATCTGGTTTCCAAGCAACTGTTTCCAATCAGCAGAGCCTGCATaaaacactcactcactcacgcattTAAAGAAGGAGCCGAGCTGGTTGACCACATCAGCTGAGGTTATGTctaatttcatttcagtttttgatttatgtttttagaGAGGCTCTTCAGGATCCGTCTGCGAGGCTGAAGGGCTTTTTAAAGTTGAAAGTGGATGAGATCTCACTTGAGCTGAAAAATTCTTCTGCTTTTGTACCTTTAGTTCaacttatgttttgttttatgttaattCGTCTTTATGACAAATATTTTAGAAGTAATAGTTAATTCAGTGCTGGACAAAGAAAATCTATCAAGCACTTTTAAAGTATCACTTCTTGTGTTATTTCTATGTAGTTTAAAGGTAAGAATGAATATTTGGTGAATATGTATCCACAATTTGACCACTGACCTACAACTTggccctaattac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005996 True 870 lncRNA 0.40 2 7238244 7253898

Neighbor

gene id symbol gene type direction distance location
XLOC_002571 NA coding downstream 176707 7050325 ~ 7061537 (-)
XLOC_002570 CABZ01061993.1 coding downstream 228754 7009374 ~ 7009490 (-)
XLOC_002569 sh2d4a coding downstream 261599 6967293 ~ 6976645 (-)
XLOC_002568 ppip5k2 coding downstream 370962 6781123 ~ 6867282 (-)
XLOC_002567 MACIR coding downstream 462973 6765109 ~ 6775271 (-)
XLOC_002573 nrg1 coding upstream 30223 7284121 ~ 7472359 (-)
XLOC_002574 wrn coding upstream 229647 7483545 ~ 7555660 (-)
XLOC_002575 BX537303.2 coding upstream 258110 7512008 ~ 7512123 (-)
XLOC_002576 ubxn8 coding upstream 369800 7623698 ~ 7636340 (-)
XLOC_002577 pcyox1 coding upstream 399286 7653184 ~ 7671219 (-)
XLOC_002566 BX511100.4 non-coding downstream 511130 6725657 ~ 6727114 (-)
XLOC_002565 NA non-coding downstream 542912 6693514 ~ 6695332 (-)
XLOC_002564 BX511100.3 non-coding downstream 558758 6677673 ~ 6679486 (-)
XLOC_002585 BX294661.1 non-coding upstream 616729 7870627 ~ 7892684 (-)
XLOC_002586 NA non-coding upstream 629855 7883753 ~ 7886040 (-)
XLOC_002590 NA non-coding upstream 727221 7981119 ~ 7983744 (-)
XLOC_002602 NA non-coding upstream 1364820 8618718 ~ 8621543 (-)

Expression


Co-expression Network