XLOC_025720 (gas7a)


Basic Information

Item Value
gene id XLOC_025720
gene name gas7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50310684 ~ 50420221 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050587
GCGGCAAGGAGTAGGCCATATGGGCGACTCAGTTCTGGATCCTCGCAAGTGGTTGGAGTTTGATCTCAAGCCAGGATTGGGAAGGTGTTGAGTTTAAGCAGAGCTGGGAAGGGTTAGATGAAGAAGACGAGGGATGCTGGAAGAGTCCTGGGTGTAGAACCGTTACCGACCTGGCGAGTTGGGCAATGAATGAGACCATAGGTTGCAGGCCTGCACTGACATGTTCTGCCAGACGAGTCCAGGGTCCACGTCCCCGGCCAGGAGGCAAAATAAGGAGATCAAGGAGACCAAAATCACTATCAACTGCGTCACATTCCCTGTGTCCACATCCACACCGGAGCAGGAGCTTCTCAAGCCCAATGAATGGAGCTACTGCGACTATTTCTGGACCGATAAGAGAGACCTTCAGGGGGCCACAGTGACCGGCTTCGAGGTGCTGCTGCAGAAACAGCTAAAGGGGAAGCAGATGCAAAAAGAGATGGCAGAGTTCATCAGAGAAAGGATAAAAATTGAAGAGGAATATGCCAAGAACCTTTCCAAACTCTCCATGTTCCCTATGGCAGCACAAGAGGAAGGGACTCTTGGAGAAGCTTGGGCTCAACTCAAGAAGAGTCTAGCAGATGAAGCCGAAGTTCATCTCAAGTTCTCCTCAAAGCTCCAGAGTGAAGTGGAGAAGCCTTTATTAACTTTCAGAGGAGACAACTTTAAAAAAGACATGAAGAAATATGACCACCACATTGCTGACCTGAGAAAGCAGCTGGTCAGCCGATACGCTGCAGTGGAGAAGGCACGGAAGGCTTTAGCAGACCGACAGAAGGATCTTGAGGTGAAAACCCAGCAGCTTGAGATCAAATTAAGCAACAAATCAGAGGAAGATATAAAGAAAGCCAGACGAAAATCCACACAAGCAGGTGATGATCTGATGCGCTGTGTGGATCTCTACAATCAGGCTCAGTCCAAGTGGTTTGAGGAGATGGTCACCACAAGCATGGAGCTGGAGAAGCTGGAGGTGGAGCGGATAGAGATGATCCAGCAGCATCTGCGTCAGTACACCACACTGCGGCACGAGACAGACATGTTCAACCAAAGTACACTGGAGCCAGTGGATCAGCTCCTGCAGAGTGTGGATCCAGCAAAAGACAGAGAGCTTTGGGTGAAGGAGCACAAGACAGGAGATCGGAGACCTGTGGATATGGACATCTAGACCatacatgcacactcacacagacacaaacacaataTGAATCTACCTGCATGCCTGTTTTCCTGAGTACTTCAACCTCTCAGCCAAAGCCATACAGGTATCACCCCTTGAAGCATTACAAAATATAAGCTTTACAGAagactttttaaatgttataatgtCAAGAGTAGTGGGAAGGAACAGCAGTGCGTTACAGTTTTTTTAGTAGCCATTTTATCCTGCATGTCCAAATTTATTATGCTACTTAATACTTCAGAGTGTTTATTACTGTACGTGTAACATCATTACAATAGACATCAGTGCTATAGATCGGAAAAGCACTGTAAAAGTAAagcacctgtttgtttgtttatttgcttcaGCAGATGCCTATAAAGTGGATTACATCGaatcagattttattttgaaatgttgtgAAGAAAGTGAACTAAATAGCTAATTGTAGATATATGGGTCAAAGATGAGGAGCCCCATTTAAAGTTAGTTGTCTatattaatgtttcaaataatttaaattaaaaagtcaaaatatATTCAGTTTCATTCATTACTTGtgtgttttatatttgtataaaattcTGACCTGTTttctgaacaataataataataataaaaaatttaaaatattaaaaaaaaaatttaatctataTGATATAGTgataaaatataaagaattacAATGACAGTTAATCACCATTTTCCTTAAATAGAGTCTTTAATTATGTCAAAATATAATTCTTGGTCCAAGGGTGCTTGacaatatttttgaaaattaaactgaattacATTTTAGTGGGTATGTTTAGTAAGAAAAATGGCATTTGTTGcttattataaacaataataataaaaacctgttTTTATCTTTGACCCATATATAGTGGCCTGGACTAAAACACGGGTCAGACATTAGGATTATTGTTACAGACAGCTTCATGATGCCATAAAGTGTttgacatcttaaaaaaaaaatgtatctttagcAGAATAAACCAGCATCAAATTAATGAGGGGTAAAAATCTAAAGTCCACCATCAGTGGTTATATCGTTAAATCTGTATtgtaggaagaaaaaaaaagttgttgttttttttttaccaaaagaaATGCAAATGACATTAATGCTATTTTCTCTTGCTACACATAAACTGCTAGCAAATTTCCTGCTTTTTTATTATCCAAATATCGTAATGGTAATTAATAAAAAGAATGCATGATCTTGCTACTGTCAAAAAGTCACCCTTTAGGGTGGGACcggattttcttttcggcttgatccctttattaattagggtcTGCCAtgatggaatgaaccac
>TCONS_00050588
ACAGCAACAAAGCAGCAGTCAGAGTCAAGCACTGCCTGCAGAAAGAGTGAGATCGTCAAAGAAAGACAGGAGGCACGAAGCAATGGAGATGGAGGAAAGCTTTGATGCAGAGGGCAGTTTTGATGATCCCTCCTATCTGTCCCCCCAGAGTCCAGGGTCCACGTCCCCGGCCAGGAGGCAAAATAAGGAGATCAAGGAGACCAAAATCACTATCAACTGCGTCACATTCCCTGTGTCCACATCCACACCGGAGCAGGAGCTTCTCAAGCCCAATGAATGGAGCTACTGCGACTATTTCTGGACCGATAAGAGAGACCTTCAGGGGGCCACAGTGACCGGCTTCGAGGTGCTGCTGCAGAAACAGCTAAAGGGGAAGCAGATGCAAAAAGAGATGGCAGAGTTCATCAGAGAAAGGATAAAAATTGAAGAGGAATATGCCAAGAACCTTTCCAAACTCTCCATGTTCCCTATGGCAGCACAAGAGGAAGGGACTCTTGGAGAAGCTTGGGCTCAACTCAAGAAGAGTCTAGCAGATGAAGCCGAAGTTCATCTCAAGTTCTCCTCAAAGCTCCAGAGTGAAGTGGAGAAGCCTTTATTAACTTTCAGAGGAGACAACTTTAAAAAAGACATGAAGAAATATGACCACCACATTGCTGACCTGAGAAAGCAGCTGGTCAGCCGATACGCTGCAGTGGAGAAGGCACGGAAGGCTTTAGCAGACCGACAGAAGGATCTTGAGGTGAAAACCCAGCAGCTTGAGATCAAATTAAGCAACAAATCAGAGGAAGATATAAAGAAAGCCAGACGAAAATCCACACAAGCAGGTGATGATCTGATGCGCTGTGTGGATCTCTACAATCAGGCTCAGTCCAAGTGGTTTGAGGAGATGGTCACCACAAGCATGGAGCTGGAGAAGCTGGAGGTGGAGCGGATAGAGATGATCCAGCAGCATCTGCGTCAGTACACCACACTGCGGCACGAGACAGACATGTTCAACCAAAGTACACTGGAGCCAGTGGATCAGCTCCTGCAGAGTGTGGATCCAGCAAAAGACAGAGAGCTTTGGGTGAAGGAGCACAAGACAGGAGATCGGAGACCTGTGGATATGGACATCTAGACCatacatgcacactcacacagacacaaacacaataTGAATCTACCTGCATGCCTGTTTTCCTGAGTACTTCAACCTCTCAGCCAAAGCCATACAGGTATCACCCCTTGAAGCATTACAAAATATAAGCTTTACAGAagactttttaaatgttataatgtCAAGAGTAGTGGGAAGGAACAGCAGTGCGTTACAGTTTTTTTAGTAGCCATTTTATCCTGCATGTCCAAATTTATTATGCTACTTAATACTTCAGAGTGTTTATTACTGTACGTGTAACATCATTACAATAGACATCAGTGCTATAGATCGGAAAAGCACTGTAAAAGTAAagcacctgtttgtttgtttatttgcttcaGCAGATGCCTATAAAGTGGATTACATCGaatcagattttattttgaaatgttgtgAAGAAAGTGAACTAAATAGCTAATTGTAGATATATGGGTCAAAGATGAGGAGCCCCATTTAAAGTTAGTTGTCTatattaatgtttcaaataatttaaattaaaaagtcaaaatatA

Function

symbol description
gas7a Predicted to enable actin filament binding activity. Acts upstream of or within chordate embryonic development and neuron development. Predicted to be active in actin filament; cytoplasm; and plasma membrane. Is expressed in several structures, including brain; eye; neural plate; segmental plate; and tail bud. Orthologous to human GAS7 (growth arrest specific 7).

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0048666 neuron development biological_process
GO:0030041 actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005884 actin filament cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130128-1 Predicted to enable actin filament binding activity. Acts upstream of or within chordate embryonic development and neuron development. Predicted to be active in actin filament; cytoplasm; and plasma membrane. Is expressed in several structures, including brain; eye; neural plate; segmental plate; and tail bud. Orthologous to human GAS7 (growth arrest specific 7).

Ensembl:

ensembl_id ENSDARG00000074443

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050587 False 2521 mRNA 0.40 11 50310684 50420221
TCONS_00050588 True 1650 mRNA 0.44 10 50312422 50419437

Neighbor

gene id symbol gene type direction distance location
XLOC_025719 NA coding upstream 22196 50286780 ~ 50288488 (+)
XLOC_025718 rsad1 coding upstream 41539 50155245 ~ 50269145 (+)
XLOC_025717 zgc:103625 coding upstream 235494 50069204 ~ 50075190 (+)
XLOC_025716 NA coding upstream 549988 49753768 ~ 49760696 (+)
XLOC_025715 NA coding upstream 686006 49565257 ~ 49624678 (+)
XLOC_025721 BX649397.1 coding downstream 116906 50537127 ~ 50552748 (+)
XLOC_025722 gsg1l2a coding downstream 182645 50602866 ~ 50781505 (+)
XLOC_025723 NA coding downstream 375100 50795321 ~ 50796217 (+)
XLOC_025724 NA coding downstream 388416 50808637 ~ 50809193 (+)
XLOC_025725 NA coding downstream 591068 51011289 ~ 51023057 (+)
XLOC_025429 BX649540.1 misc upstream 20061648 30248739 ~ 30249036 (+)
XLOC_025713 NA non-coding upstream 804512 49490554 ~ 49506172 (+)
XLOC_025712 NA non-coding upstream 850760 49455762 ~ 49459924 (+)
XLOC_025726 NA non-coding downstream 997201 51417422 ~ 51446996 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000334_00049341_00064168 NA coding CI01000334 null 48999 ~ 64168 (-)