LOC110529317 (LOC105024319)


Basic Information

Item Value
gene id LOC110529317
gene name LOC105024319
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 8363464 ~ 8376260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984667.1
TTATCTAGCAGCTCTTATTTGGGCTTCTGTGAACTCCTGGTCCCGCCCACAGGCCCCAGGCCCCCGGCCACCGGCCCCGGGACAAAGGGGGGATATTTAAGGGACACCTTTCACCCTCACCCTTTGTCCCAGTGGAAACTCCAGTCTTGGCGTACAACCTGAAGGCCATCTGAAACAAGACCAATCATGTGTGACGACGAGGAGACTACCGCCCTCGTGTGCGACAACGGCTCTGGCCTGGTCAAGGCTGGGTTCGCCGGTGATGACGCTCCCCGCGCTGTGTTCCCATCCATCGTTGGACGTCCCCGTCACCAGGGCGTGATGGTGGGAATGGGACAGAAGGACAGCTATGTGGGAGACGAGGCTCAGAGCAAGAGAGGTATCCTGACTCTGAAGTACCCCATCGAGCACGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGCGTGGCCCCTGAGGAGCACCCCACCCTGCTCACTGAGGCCCCCCTCAACCCCAAGGCCAATAGGGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACGTCCCCGCCATGTACGTCGCCATCCAGGCCGTGCTGTCCCTCTACGCCTCCGGTCGTACCACCGGTATTGTGCTGGACTCCGGTGATGGTGTGACTCACAATGTCCCCATCTATGAGGGTTATGCTCTGCCCCATGCCATCATGCGTCTGGATCTGGCCGGTCGAGACCTCACTGACTACCTGATGAAGATCCTGACTGAGCGTGGCTACTCCTTCGTGACCACCGCCGAGCGTGAGATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGAATGAGATGGCCaccgctgcctcctcctcctctctggagAAGAGCTATGAGCTGCCTGACGGTCAGGTCATCACCATCGGCAACGAGCGTTTCCGTTGCCCAGAGACCCTCTTCCAGCCTTCCTTCATTGGTATGGAGTCCGCTGGTATCCATGAGACCGCCTACAACAGCATCATGAAGTGTGACATTGACATCCGTAAGGACTTGTACGCCAACAACGTCCTGTCAGGAGGTACCACCATGTACCCTGGTATTGCTGACCGTATGCAGAAGGAGATCACCGCTCTGGCCCCCAGCACTATGAAGATCAAGaTCATCGCTCCCCCCGAGCGTAAGTACTCTGTGTGGATCGGCGGCTCCATCCtggcctctctctccaccttccagCAGATGTGGATCAGTAAACAGGAGTACGACGAGGCCGGCCCTTCCATCGTCCACAGGAAGTGCTTCTAAAACATCCCATCTACCCACACCTCCTCCATACACATTCACCCTCCTTCTGTTGTCTGCCTTTGTACCGTTGACTGTATATACATGTTCTGTTGTAATAAAATAGTTGCTTGTAACAATAAGCATTAAGTTA

Function

NR:

description
PREDICTED: actin, alpha cardiac isoform X1

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K12314 ACTC1; actin, alpha cardiac muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984667.1 True 1450 mRNA 0.56 8 8363464 8376260

Neighbor

gene id symbol gene type direction distance location
LOC110529314 7b2 coding downstream 5783 8344022 ~ 8357681 (-)
LOC110529315 LOC106571103 coding downstream 19552 8342368 ~ 8343912 (-)
LOC110529177 LOC106571102 coding downstream 108052 8010070 ~ 8255412 (-)
LOC118965603 NA coding downstream 416438 7946285 ~ 7947278 (-)
LOC110529310 LOC106571100 coding downstream 418583 7943145 ~ 7944881 (-)
LOC118965604 NA coding upstream 189130 8565390 ~ 8567720 (-)
LOC110529319 LOC106571106 coding upstream 309100 8685360 ~ 8731870 (-)
LOC110529325 LOC106571107 coding upstream 381821 8758081 ~ 8862990 (-)
LOC118965490 LOC106571111 coding upstream 487939 8864199 ~ 8879928 (-)
LOC110529323 LOC106571110 coding upstream 613185 8989445 ~ 8999694 (-)
G670109 NA non-coding downstream 1701 8361563 ~ 8361763 (-)
G670108 NA non-coding downstream 2379 8360828 ~ 8361085 (-)
G670105 NA non-coding downstream 5195 8358051 ~ 8358269 (-)
G670088 NA non-coding downstream 45017 8317632 ~ 8318447 (-)
G670072 NA non-coding downstream 76496 8281643 ~ 8286968 (-)
G670124 NA non-coding upstream 17831 8394091 ~ 8394548 (-)
G670115 NA non-coding upstream 45077 8421337 ~ 8438087 (-)
G670140 NA non-coding upstream 55777 8432037 ~ 8433677 (-)
G670148 NA non-coding upstream 67911 8444171 ~ 8444449 (-)
G670170 NA non-coding upstream 90332 8466592 ~ 8466958 (-)
G670097 NA other downstream 21344 8340990 ~ 8342120 (-)
G669918 NA other downstream 252506 8107871 ~ 8110958 (-)
G669281 NA other downstream 945229 7416025 ~ 7418235 (-)
LOC110529302 LOC106571090 other downstream 949228 7400907 ~ 7423688 (-)
G669229 NA other downstream 1028750 7325550 ~ 7334714 (-)
G670549 NA other upstream 200791 8577051 ~ 8577780 (-)
G670733 LOC107575789 other upstream 579833 8949694 ~ 8961731 (-)
G670905 NA other upstream 887590 9263850 ~ 9265093 (-)
G671122 NA other upstream 970124 9346384 ~ 9347879 (-)
kif26aa LOC106571127 other upstream 1595422 9825982 ~ 10013023 (-)

Expression


Co-expression Network