XLOC_025725


Basic Information

Item Value
gene id XLOC_025725
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 51011289 ~ 51023057 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052375
CATCCACTAAACGATGAGATCTACAATTGCACATTGTTACATCCTATGATGTATTTAGGTAATAAGTTGTTGGTGTGAGTGGCAGCTTATTGCtctctctgcctctctctctctcattgagcAGCGTTCCAAACCAGCCGCACCTGTTTTCAATCAGAGCAAATCGGATCGGTTGCTGTTGATTGAGCTTCCAGGCTTTATAAAGAGGCAGAGCGGCAAAGCACGGAGAGAGTCATTTGGATT
>TCONS_00052376
CATCCACTAAACGATGAGATCTACAATTGCACATTGTTACATCCTATGATGTATTTAGGTAATAAGTTGTTGGTGTGAGTGGCAGCTTATTGCTCCccccttttgttttattaatcgctctctctctgtctctctgcctctctctctctcattgagcAGCGTTCCAAACCAGCCGCACCTGTTTTCAATCAGAGCAAATCGGATCGGTTGCTGTTGATTGAGCTTCCAGGCTTTATAAAGAGGCAGAGCGGCAAAGCACGGAGAGAGTCCCTGTTTTCCCTAACCCAGCGATTATAGTGTGATAGAAATTTTGGCTGGATATTTAGAACTGTGAGTTTGTGAATCTTGTGAGATTATAGTGTGAATAAGAGTGACATGTAACCTTATGTGTAAAGTAAGCCGTGTAAAGAGACAAGTGGTGATTTATTTTGGGTTTATCCTTTAAGTTTCCTCCTGTTTCTGGATTTAGCCAGGTTGTGGGGTAAGAGCATTGTCATTGATTTTgagttttcttttatatatattaggaaatctagaactttttgttaatttaggaagtttttgttttgttggttattttgGCCTTACCCTCTCATAATGATTTTG

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0060322 head development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052375 False 243 lncRNA 0.45 2 51011289 51011570
TCONS_00052376 True 606 lncRNA 0.39 2 51011289 51023057

Neighbor

gene id symbol gene type direction distance location
XLOC_025724 NA coding upstream 202096 50808637 ~ 50809193 (+)
XLOC_025723 NA coding upstream 215072 50795321 ~ 50796217 (+)
XLOC_025722 gsg1l2a coding upstream 229784 50602866 ~ 50781505 (+)
XLOC_025721 BX649397.1 coding upstream 458541 50537127 ~ 50552748 (+)
XLOC_025720 gas7a coding upstream 591068 50310684 ~ 50420221 (+)
XLOC_025726 NA coding downstream 394365 51417422 ~ 51446996 (+)
XLOC_025727 ttyh2l coding downstream 540638 51563695 ~ 51657722 (+)
XLOC_025728 chmp6a coding downstream 637101 51660158 ~ 51677582 (+)
XLOC_025729 baiap2a coding downstream 661906 51684963 ~ 51948026 (+)
XLOC_025730 NA coding downstream 735288 51758345 ~ 51758711 (+)
XLOC_025429 BX649540.1 misc upstream 20762253 30248739 ~ 30249036 (+)
XLOC_025719 NA non-coding upstream 722801 50286780 ~ 50288488 (+)
XLOC_025716 NA non-coding upstream 1250593 49753768 ~ 49760696 (+)
XLOC_025731 NA non-coding downstream 872267 51895324 ~ 51900899 (+)
XLOC_025735 NA non-coding downstream 1201046 52224103 ~ 52264146 (+)
XLOC_025737 BX511132.1 non-coding downstream 1344245 52367302 ~ 52379472 (+)

Expression


Co-expression Network