LOC110529181 (LOC106571156)


Basic Information

Item Value
gene id LOC110529181
gene name LOC106571156
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 11185737 ~ 11210434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984743.1
TCAGTCTCAACAGGTACACGCATGATACAgacttcaccagacagagagagaaagagaaaaggaaagagagcaagagagagacaaggagatagggtgagagagagtgagagagagagagggagggagggaagtagagggagCAGACACTGGAGGAGGACACAGATAACCTGTCCTATGTGTGGGTCCTCTCAAGGCTTCACAGCCTCCTCCCAGCACAGCACAGTTATGTTAACCTCAGATAGCTCCCCTTCACCTCACACCACAGTGGTCACCACCCCAACCATGTCGGACTCAGACCCTCAGGACCCAGACATGACCCACTGGAGTGAAGCTGAGTTCCAGGAGAGGTGCACCTACATTGTGAAGGACCACACGTTGGATGAGGAACCGGAGAACCACCCAGAGAACCAGGACAAGACCAAGGCTGAGAGGTCTCTACCCAGAAACCTGGTCCTGAAACGCTGCCTTGACTCTGCAGAGGTGCTTGGGGTGACCAGTCGGGAACTCATTCCGAAGGGGACGCGGTTCGGCCCTCTGGTTGGCCAGAGCTACACCAATGACACGGTGCCCAAAGATGCTAACAGGAATTACTTCTGGAGGgTGTTTTCAGAGGGTCGGTTACATCACATCCTGGATGGCTTGGACGAGGAGAAGAGTAACTGGATGCGCTACGTCAACCCAGCCCGTTGTCACGGAGACCAGAATCTGGCGGCGTGCCAGACTGGCATGGCCATCTACTTCTACACGGTGAGAGCCGTACCACCGGGCCAGGAGCTGCTTGTGTGGTACTGCCCGGAGTTAGCCAACCGCCTCAACTACACACCCCCAGGAGAGCTCGCCACAGAGAGAATTGAGCACAACCAGGTTTGCGGGAAGAGGGGGTACAGCATGTCCGAAATCCTGAGGAAGGAGCCCACCAAGCCCCATTCCACTTGCCCCCTACTCCCCGAATCTACACTGTCCCCAACCTGCAGCCCTGTCCTACCCCTCAGCCCCCGTTTGGTCTACCCAAGTTACCCATCTATCCTATACTGTTCCCCCCCCATCCCCAAAAGAACCCTGGACAGCAGCCCTGTCACCCCCCACATGTACTTTCCTGTCAATCCTACCCCGGGTGTCTCCATCACACCCAAACATTACCCAGAGTCCTCAGTGCCAGGCCAGATGTACCTCAGTCAACGGTGCAGTCCCTACCTCATACCTCACTATCCACTTGGCCTTAACAGCATACGACCTCACACATACCCCCTGTGCAGTGACAGACTAGCTCCACATATACCACTTCCACCTCACATGCTGCCCTTTGAGGGGTACCCGCACTTCCTGCACCCATCAGCCAATGGACACAAAGAGCTCCCGGTTTCACTGACCACTACACACAAAGACCTCTCACTAACCAATGGCAGCAGAGATATGCCCTTTGCACTGACAAAAAAATACGTAATTTGTTTGACGACCAGTGGGCGCAAACATCTTGGTGACCTTATGCCCTCACCAAAACAATACCTCAAAAACCTCACTGTGACACCAACAGACAACATCATGGACTCTAAACACGCCCCAGCCAGCAGCACCTTCGATAACCAGCCTCTACCAGCCACGTCCAGGGCCTCATCCATGGCCTCATCCCGTCTCGCACCCAGGGGAGGCTCACCGCCGGCAGGCCTGGCTGCCTCCTCTGACGACCTCCCCTCCAAACCCACATCCGCCCTGCTGAGTTCCAGCCACAGTGCAGAGGAAGGGGCAGGAGACCTGCGGAAGGCCAGACATGGTAGACGGGTCATCGGGTACAAGACCCTGTCCTACCCCCTCACCCGGAAGAACGGGAAGATCCGGTACGAGTGCAACGTCTGCAGCAAGATCTTCGGGCAGCTGTCCAACCTCAAGGTTCACCTGCGTGTCCACAGTGGAGAGCGGCCCTTTAGGTGTCAGACCTGCACTAAAGACTTCACCCAGCTGGCCCACCTCCAGAAACACTTCCTGGTTCACACTGGGGAGAAGCCACATGAGTGCCAGGTGTGCCGCAAGCGCTTCAGTAGCACCAGCAACCTGAAGACCCACCTGCGTCTCCACTCAGGCGAGAGGCCCTACCAGTACAAGCTGTGCAGCGGCCCGATTCACCCCAACATGTTCACCTTAAGCTCCACAAGCGCCTGCACACTGTCGAGCGCCCACACCGGTGCCCACTCTGTCCACGCTCCTAACTCCACCACTGCCTCCTCCAGGTGCACCTCCAGGGCTTCTGCCCCGCTGGCTCCACCCTCTCAGGCTCCGCCCTCTCAGCTGAAGAGCTTCACTGCATCAACACCGAGATGGAACAGTTCGACCTGAGAAAGGCGGCAGAACGCTGAAAGAAGATGGTGATGGAGACCGGAGAAATGGAACACCTACATCAGAGTCTTACTGCAAGAGATGAGAACCTCCAGCCACCAAGTGAGCGCTGATAACAATGTGTTGTTCCTGGAGCTTGGTTTCTacgaagcagcagcagcagcagcagcaaggtAGTCCTTGGGCCTTAGAGGCTGCAGCATCGCAGCCTCCCTCTGCATGCTGGCCGTATCAAACCGGAGTCGGTCATATGATATAACAAACCACTAATACcctttcacactactgagcctagaCATCCCAAGCCCAGCTGTACTTCACTGGCCTGATTGATTATTCATCCACATTATTTCCTGGAAACATATactggaaaggacaatgtgaaaaagAAATACCCGGCAAAGTACAGCTTGGTCGAAAGTTATAGTGTGGAAAGGGTACAAGAGACAACGTACCTATAATCCATCATGCTGACAGTGGCTGATAGTGACCTTGACTGTTGGAAGCAAGGCTTTGTCTCCATGACAGGGGTCTTTCCTCTCAAGGCTATGGGAAGAAGTGGGACAACCATGAGAACCTTACTGTGAGAGCATAAAAACATGAGACTTGTATTGTACCTATTAAATCCTCAGCCTTATTATTCAGTTAAGCAGCTTATTGTAACCTGAGGAAGCCAGAAAGACAGGGAGATTTGTGATCAAATGTTTTTAACAGGGTTCTATTTACTACCATCTGCTTTTGTACTACTTGACGATGTGGAGTAATA
>TU766512
GTTCCCCCCCCATCCCCAAAAGAACCCTGGACAGCAGCCCTGTCACCCCCCACATGTACTTTCCTGTCAATCCTACCCCGGGTGTCTCCATCACACCCAAACATTACCCAGAGTCCTCAGTGCCAGGCCAGATGTACCTCAGTCAACGGTGCAGTCCCTACCTCATACCTCACTATCCACTTGGCCTTAACAGCATACGACCTCACACATACCCCCTGTGCAGTGACAGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984743.1 False 3097 mRNA 0.54 7 11185737 11210434
TU766512 True 231 lncRNA 0.56 1 11189252 11189482

Neighbor

gene id symbol gene type direction distance location
LOC110529362 LOC106571157 coding downstream 1384 11162434 ~ 11184353 (-)
LOC110529363 tram2 coding downstream 23668 11148108 ~ 11162069 (-)
mrpl19 mrpl19 coding downstream 253274 10921591 ~ 10932463 (-)
mycn LOC106571147 coding downstream 392870 10786206 ~ 10792867 (-)
LOC110529351 LOC106571138 coding downstream 952774 10218620 ~ 10232963 (-)
LOC110529367 LOC105021682 coding upstream 144911 11355345 ~ 11520698 (-)
LOC118965492 LOC106560407 coding upstream 536621 11747055 ~ 11764400 (-)
LOC110529371 LOC106571168 coding upstream 618525 11828959 ~ 11839997 (-)
LOC110529372 NA coding upstream 672626 11883060 ~ 11914200 (-)
LOC110529377 LOC106571175 coding upstream 775012 11984834 ~ 11997491 (-)
G672884 NA non-coding downstream 3942 11181592 ~ 11181795 (-)
G672881 NA non-coding downstream 6235 11179292 ~ 11179502 (-)
G672846 NA non-coding downstream 38840 11146633 ~ 11146897 (-)
G672845 NA non-coding downstream 40749 11144741 ~ 11144988 (-)
G672922 NA non-coding upstream 3560 11213994 ~ 11214211 (-)
G672924 NA non-coding upstream 4402 11214836 ~ 11215237 (-)
G672925 NA non-coding upstream 5410 11215844 ~ 11216117 (-)
G672987 NA non-coding upstream 27346 11237780 ~ 11237987 (-)
G672989 NA non-coding upstream 28988 11239422 ~ 11239688 (-)
G672436 LOC107575789 other downstream 447051 10738224 ~ 10738686 (-)
G671820 NA other downstream 1063764 10034772 ~ 10121973 (-)
kif26aa LOC106571127 other downstream 1212925 9825982 ~ 10013023 (-)
G671122 NA other downstream 1837858 9346384 ~ 9347879 (-)
G670905 NA other downstream 1920644 9263850 ~ 9265093 (-)
G673053 NA other upstream 134039 11344473 ~ 11344782 (-)
G673863 NA other upstream 808182 12018616 ~ 12025742 (-)
G673867 NA other upstream 929936 12140370 ~ 12141994 (-)
G674015 NA other upstream 1073403 12283837 ~ 12284220 (-)
G672917 NA non-coding upstream 17098 11206580 ~ 11206957 (-)

Expression


Co-expression Network