Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110529382 |
| gene name | LOC100136579 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 12071414 ~ 12089729 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| apolipoprotein B-100-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036984766.1 | True | 11796 | mRNA | 0.49 | 28 | 12071414 | 12089729 |
12,066,000
12,068,000
12,070,000
12,072,000
12,074,000
12,076,000
12,078,000
12,080,000
12,082,000
12,084,000
12,086,000
12,088,000
12,090,000
12,092,000
12,094,000
12,096,000
12,098,000
12,100,000
12,102,000
12,104,000
12,106,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118965493 | LOC106607564 | coding | upstream | 35940 | 12028902 ~ 12035474 (+) |
| LOC110529378 | LOC106571177 | coding | upstream | 45666 | 12018534 ~ 12025748 (+) |
| LOC110529375 | LOC106571174 | coding | upstream | 75974 | 11993083 ~ 11995440 (+) |
| LOC110529376 | LOC106571173 | coding | upstream | 79114 | 11990636 ~ 11992300 (+) |
| LOC110529374 | LOC106571171 | coding | upstream | 87366 | 11919066 ~ 11984048 (+) |
| LOC110529381 | LOC100136579 | coding | downstream | 16289 | 12106018 ~ 12124292 (+) |
| LOC110529383 | LOC106571178 | coding | downstream | 47887 | 12137616 ~ 12153511 (+) |
| pum2 | pum-2 | coding | downstream | 74762 | 12164491 ~ 12187988 (+) |
| LOC110529388 | LOC106571235 | coding | downstream | 100100 | 12189829 ~ 12193966 (+) |
| LOC110529389 | laptm4a | coding | downstream | 109227 | 12198956 ~ 12210262 (+) |
| G673569 | NA | non-coding | upstream | 86726 | 11984073 ~ 11984688 (+) |
| G673523 | NA | non-coding | upstream | 226757 | 11843459 ~ 11844657 (+) |
| G673487 | NA | non-coding | upstream | 322580 | 11748575 ~ 11748834 (+) |
| G673469 | NA | non-coding | upstream | 354282 | 11716912 ~ 11717132 (+) |
| G673454 | NA | non-coding | upstream | 374243 | 11696906 ~ 11697171 (+) |
| G673581 | LOC105030512 | non-coding | downstream | 67614 | 12157343 ~ 12157681 (+) |
| G673565 | rhob | non-coding | downstream | 72045 | 12161774 ~ 12163663 (+) |
| G673668 | NA | non-coding | downstream | 123567 | 12213296 ~ 12213637 (+) |
| G673687 | NA | non-coding | downstream | 160675 | 12250404 ~ 12252739 (+) |
| G674025 | NA | non-coding | downstream | 201420 | 12291149 ~ 12291581 (+) |
| G673590 | NA | other | upstream | 132262 | 11933681 ~ 11939152 (+) |
| LOC110529360 | eva1a | other | upstream | 943991 | 10936067 ~ 11128126 (+) |
| G671542 | LOC106571127 | other | upstream | 2219589 | 9849510 ~ 9851825 (+) |
| G670992 | NA | other | upstream | 2532813 | 9498702 ~ 9613040 (+) |
| matn3a | LOC106571183 | other | downstream | 129433 | 12214214 ~ 12224367 (+) |
| znf106b | LOC106571191 | other | downstream | 259042 | 12348710 ~ 12373335 (+) |
| G674668 | NA | other | downstream | 1095484 | 13185213 ~ 13185592 (+) |
| G674669 | LOC105902936 | other | downstream | 1096378 | 13186107 ~ 13186497 (+) |
| G675212 | hsp90ab1 | other | downstream | 1462471 | 13552200 ~ 13554063 (+) |
