churc1 (churc1)


Basic Information

Item Value
gene id churc1
gene name churc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12345907 ~ 12348688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984786.1
AAGAATAGCCTGTCATTGCGGAAGTAGCTTCAGTGAAGAAAACCTTTTTTATTGAGATTTGAAAGATAATAATTTACTGTCGTGAGAAAACGAGTCACGTCATATAGTTAGAGATTACTACCCGTTTTACTGTGTCTATTGCTGGCTTTTTGAAAAGGAGTAAAATGTGTAATGGTTGTGTGCAGAAAGAGTACCCCGACAGGGGGAACACATGTTTGGAGAATGGCTCCTACCTGATGAACTACCTGGGCTGTGCCAACTGTCACCAGAGGGACTTTGTGTTGATCAGCAACAAGGCCAcagaggatgaggatggagaggagatagTCACCTATGATCATGTGTGTAAAAACTGTGACCACGTCGTAGCCAGGCATGAGTATACCTTCTCTGTGGTGGACGATTATCAGGAGTACACAATGTTGTGCATGCTGTGTGGGAAGGCGGAGGACTCCATCAGTGTGCTGCCAGATGATCCCAGGCAAACCGCCCCTCTCTTCTAGAAGAGTACAATGACAGACTGAGATGACCAGATGTAAACAATCAAGAACTGCAAGCTCAACATGGACCAGAAGTCCCATGAAAGAGATGGACTATTAGCATTCTAGAAAATAGACCAGGTATTCTAGAACACATATCACTTCTCAAAGCCATATAGCCATGCATCTCTATATGGCTCTGCCCAGACATAACATTTCACTTATAGAACACAGAGCTTGTCTAAGATGGCAAGTCCTATATTCATCAAATTGAAGGAATAATACCAGTCTTCTTTAACATAGACTTTTCATCAGCATTAAGGGTAAGCAAAGACTACATAGTATAGTACATGCTACTCTTCATTGACCACAGATATATACTGTCCAATTTTGCTAGAATGAGATTTAGGGCCTAGTTCACTCAGTAACAACCCCAACCCCCACCCCATAAGCACTATTAGAGATTAATCTTGGCTTATCAGAGCGCAAGAAGAagctactaccatatcacatatACCTAAGGATCTACATTAAGTTTATTGAAGgtttgggggctaagggttgttTCTGTATAGGGCCTATGTtgggggctaggggttgtttctggacagggtctaggttggggactagtggttGTTTCTGTATAGGGTCTAGGttggggctaggggttgtttctggacagggtctaggttggggactagtggttGTTTCTGTATAGGGTCTAGGTTGGGGCTACGGGTTGTTTCTTGACAGGGTCTAGGTTGGGGCTACGGGTTGTTTCTGTATAGGGCCTAGGTTGGGGCTAAGGGTTGTTTCTTGACAGGGTCTAGGTTGGGGCTAAGGGTTGTTTCTTGACAGGGTCTAGGTTGGGGCTACGGGTTGTTTCTTGACAGGGtctaggttggggactagtggttGTTTCTGTATAGGGTCTAGGTTGGGGCTACGGGTTGTTTCTTGACAGGGTCTAGGTTGGGGCTACGGGTTGTTTCTGTATAGGGCCTAGGTTGGGGCTAAGGGTTGTTTCTTGACAGGGTCTAGGTTGGGGCTAAGGGTTGTTTCTTGACAGGGTCTAGGTTGGGGCTAAGGGTTGTTTCTTGATAGGGTCTAGGTTGGGGCTAAGGGTTGTTTCTTGATAGGGTCTAGGTTGGGGCTAAGGGTTGTTTCTTGACAGGGCTTAGGTTAGGGTTATTTTTTTAGGGCTTGGAACCCTAGTTAGACTGCTGTTAAGGATAAATAACTGTTACAGATCACATGTCTGTTTAAATAGATGTGACagtattgttttttaaatataaatattaagTAAAACAAATGTTTGTATGTTGGGGGGGGGCAATGGAACTTGACACTGTACGCATTTGTTGGTTGCATCATAGCGTAATAAAGACAACGTGTAGGTAGTCTACTATTTTGAAAATCGATTCTTTCATATATACTttacagaaatataaacgcaacatgtaaagtgttagtcacATATTTCATGGGATGAAATAAAATATACCAGAaatattccatatgcacaaaaa

Function

symbol description
churc1 Predicted to enable zinc ion binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; fibroblast growth factor receptor signaling pathway involved in somitogenesis; and negative regulation of fibroblast growth factor receptor signaling pathway. Is expressed in several structures, including digestive system; ethmoid cartilage; forerunner cell group; keratinocyte; and mucus secreting cell. Orthologous to human CHURC1 (churchill domain containing 1).

NR:

description
Churchill protein

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984786.1 True 2011 mRNA 0.43 4 12345907 12348688

Neighbor

gene id symbol gene type direction distance location
mideasa LOC106571189 coding downstream 15872 12315015 ~ 12330035 (-)
LOC110529387 rhob coding downstream 182219 12161773 ~ 12163688 (-)
LOC110529379 hpcl1 coding downstream 316598 12026183 ~ 12029309 (-)
LOC110529184 LOC106571176 coding downstream 330161 12013722 ~ 12015746 (-)
LOC110529377 LOC106571175 coding downstream 355386 11984834 ~ 11997491 (-)
capn3b can3 coding upstream 26173 12371350 ~ 12412260 (-)
si:dkey-12h9.6 LOC106571193 coding upstream 91290 12439978 ~ 12457014 (-)
rd3 LOC106571197 coding upstream 193182 12541870 ~ 12552126 (-)
slc30a1a znt1 coding upstream 243994 12592682 ~ 12602018 (-)
nek2 LOC106571199 coding upstream 256008 12604696 ~ 12610815 (-)
G674204 NA non-coding downstream 20525 12325158 ~ 12325382 (-)
G674046 NA non-coding downstream 40028 12305666 ~ 12305879 (-)
G674033 NA non-coding downstream 48097 12297590 ~ 12297810 (-)
G674027 NA non-coding downstream 53895 12291797 ~ 12292012 (-)
G674209 LOC106571191 non-coding upstream 1647 12350335 ~ 12353800 (-)
G674254 NA non-coding upstream 80866 12429554 ~ 12431319 (-)
G674208 NA non-coding upstream 83759 12432447 ~ 12433143 (-)
G674326 NA non-coding upstream 218359 12567047 ~ 12567554 (-)
G674015 NA other downstream 61687 12283837 ~ 12284220 (-)
G673867 NA other downstream 203913 12140370 ~ 12141994 (-)
G673863 NA other downstream 320165 12018616 ~ 12025742 (-)
G673053 NA other downstream 1001125 11344473 ~ 11344782 (-)
lpgat1 lpgat1 other upstream 267192 12615879 ~ 12697323 (-)
LOC110529426 NA other upstream 1026251 13373030 ~ 13451428 (-)
G675413 NA other upstream 1135405 13484093 ~ 13484934 (-)
G675415 NA other upstream 1136991 13485679 ~ 13486137 (-)
G675834 LOC106571238 other upstream 1634938 13983626 ~ 13986108 (-)

Expression


Co-expression Network