slc30a1a (znt1)


Basic Information

Item Value
gene id slc30a1a
gene name znt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12592682 ~ 12602018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124528.1
GTACGTGCATAtcgtaagctagctagctagctaactcagTTAACGTTAACAAGTGATCAGCGGAGAGAAATGGCTTGTGAACCTAATCGTGTGCGGCTAATATGCATGCTTTCATTGACTTTTGGCTTTTTTATCGTGGAGGTTGTCGTCAGTCGGATCACTGCATCTTTAGCAATGCTTTCGGACTCCTTTCATATGCTATCGGATGTCATAGCGCTGCTTGTGGCTTTGGTGGCCGTGCGCTTCGCTCAGAAAACACAATCGACAAATAAAAACACCTTCGGATGGATCCGGGCTGAGGTGATGGGGGCTCTGGTCAACGCAGTGTTCCTCACAGCTCTCTGTTTTACCATAATATTGGAGGCCGTCGAGCGATTCACCAACCCACATGAAATCGAGAAACCCCATGTAGTTATCGGTGTGGGGGCCGCCGGGCTCCTGGTCAACCTCCTCGGGCTGTGCTTGTTCCACGGACACGCAGGTGGTGGACACGGGCACTCCCACGGAGGAGGAGGCCATTCTCATGGAAATAAGAAAAACAAGCGGGGTAAACTATGCAAGTCAGAAAGACCGAATGGATCATCAGGAGAGGAGACCAACAACCTGGTAGGAAGCCACAACAGCCCCCCTAATGGCGTGAACACCGAGAGACGTAGACATGAGATCGTTTGTAACGACAGTGAGATGCAGATGAACGGCAGCGCTCCCTACGAGGAGCTGGACTACAGCCACGACGAGGCCTCGCTCAACATGCGCGGCGTCTTCCTACACGTGCTGGGCGACGCCCTGGGCTCTGTCATCGTGGTGGTCAACGCCCTCATCTTCACCTTCGTATGGCGGCCGTGCCCGCCCGGCGAGACCTGCTTCAACCCATGCATCGACAGCCACTCCACCGACGGCAACAGTTCTAGCTTTCAACGGACCGTGGTGGGACCGTGCTGGGTGCTGTACCTGGACCCCACGCTGTGCATCATCATGGTGGGTATCTTGCTCTACACCACCTACCCACTGCTCAAGGAGTCTGCACTGATCCTCCTGCAGACGGTGCCCAAGCAGATCGACATGCATCGCCTCAACGAGCGGCTGCTCTTGCTGGACGGTGTGCTGGCCATCCACGAACTGCACATCTGGCAGCTGGCGGGCTCACGCATCATCGCCACGGCGCACATAAAGTGTCACGACCCCACGTCCTACATGGACGTGGCCAAGCGCATCAAGGACTTCTTCCATGACGAGGGCATCCACGCCACCACCATCCAGCCTGAGTTTGTTACCATCAACTCCGAGTCAAGTGCCTCCCTCTGCGAGCTCTCCTGCCGGACACAGTGCGCACCTAAGCTGTGTTGTGGCGCTGCTGACAAGCTGGGCGTGGCTGGTGCTGGTCCGGTAGGCTCGGAGAAGATCCTGAGTGGTGAGGGGAATGCGCTGGCGGCCTCGGCCATAGATGTAATCAACGAGACCCCACAGGGAGCAGCAATCCTGGAGCAGGCGGCCACTGCAGTTGTCCAGGTGGTTCCTCAGCCGGAGCCCGAGGTCGCCATCACCCGAGAGGTGGAGTCTTCTCTGTGAGAGACCAGACAGTCAGAGGAGTTTTCTTTTCAAGTGCGGGCTAAACTTGCCGACGGGTTGTCGTTTGTACAGCGCTCTCGGTTGCTGGAGACGGGTTGAAAAATGGCTCCGCCGCGGTCTGGTTTGATGACACCCTCTGTTCTGAGCCCCTAACCCTCCCACCACTttaccccacctccacaacctacCCCTAGCCACCTTTACCTCCTCACCCCTGACCCCCTCACCCCTGACCCACTCTCTGAGTGTCACAGAGAGCAGCACATTGATGATACTTGTGACTTCACCTCTCACCCAGGCTGGGGTTCAGCCTGGTCTGGCCTGCTGCATGTGTGGCCTACCCCTCATTAGCAccatgttgtgatgtgtgtgtggtcCTGTCCCTCCATGGTGTCTCTGTGCCAAAGCTTCTCAATGCAGGGCAGAAGGGACAAGGGGAGACTCCAACAAGGACAAAGAGCAAATACTACATATGCAAGGCAACGCACACCTGTCTACTCCGCAGGTTTTTAAAATCGATCTCTGAACCTTTCATTTAtgtattattacatttctgttggATAGGCTTTGAACATCTCTATTTTATTAGCCTTGGGCGCCCAATGGAAAATGATTATATTACAACAaaaatatttatgtatttaaGTTTAGTAATGATCTATTTCTCTCTGTCAATGCTTTCATAATATTTAGTTTGGAtgatggattacattttttgtaATTGTTCTGCCACTTGAATATTTGACAAACCATCTATGCtgtagacttttttttttttgaaattgTGCATTTTGCTTTTAATTATGACTTTTCTGGCCTTGACTCTGTTTTAATGGCTGTTGTGAGTTGAATGCAGATgctgtgttaaaaaaaaactCACCTTTATTTCAAACTGATTTTAAATGGCACTGAGTACAGTTGGAATAAGTACTGTAGGTTAGCCTAGCTTGTATTGGCAAACTTCGACAAACATCAAATCGGCCTTGCAAGCCTGTGCGTCTATCACTGAAATAAATGTGTACTACAAAATGTCAACAACTATATTGTTTTAAATCTATGCTGGAGGACATTCAGATGGGTTGTTGAAATTCATACTAATATTCCTCATGAATATGTTGAGGAAGGGACCTAGTCAAAATCCATCCTGAAGGTTTTTAGTTTCTAGTCCTTCTGCTGTGACGTTGCATGACCAAACTGAAGTGTTCTTTGAATCACAGAGCTTCAAAACAGTAGCCTACTTCCTCGTTTTCTCAGATAGCAAGAATAACTTTATCGAAATGTCACTTGGGCCTAAGCTTCTCCTTTCTTTGTAGTGAATGAGTTTGTTAGGCTTCATGTGCCGATTTTGACAGTAATCTTAgtggcctttttttttttaatagaagGAAATCTGATCATTCCTCATCCAGTATCATTTATTATCAACATCACAAAGATATCGTTTTTATATGATGATTCAAGGATGCATTTCAGATATCCACTCAAAGTTAATGTGTATGCAGTATAGAAGTATTGTATTGGGAAATGCATTTTGACACCTTCCTTTGTTTTGAAAATGTCTGGTTACTATCATTCAGTGTCTTTGAGACTCGTTCTCTCTGTGCAAATTGAGTTGTCGTTTTTTGGATTTTAGATATGTGTTTTTGATATATTACAGTACCTGTCAATGTGTCATTGTGAAAATTAAACATGCTTGTTTGGTACAGT

Function

symbol description
znt1 solute carrier family 30 (zinc transporter), member 1

NR:

description
unnamed protein product

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0010043 response to zinc ion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K14688 SLC30A1, ZNT1; solute carrier family 30 (zinc transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124528.1 True 3276 mRNA 0.48 2 12592682 12602018

Neighbor

gene id symbol gene type direction distance location
rd3 LOC106571197 coding downstream 40556 12541870 ~ 12552126 (-)
si:dkey-12h9.6 LOC106571193 coding downstream 135668 12439978 ~ 12457014 (-)
capn3b can3 coding downstream 180422 12371350 ~ 12412260 (-)
churc1 churc1 coding downstream 243994 12345907 ~ 12348688 (-)
mideasa LOC106571189 coding downstream 262647 12315015 ~ 12330035 (-)
nek2 LOC106571199 coding upstream 2678 12604696 ~ 12610815 (-)
lpgat1 lpgat1 coding upstream 13861 12615879 ~ 12697323 (-)
ints7 ints7 coding upstream 95488 12697506 ~ 12707399 (-)
sytl3 sytl3 coding upstream 327245 12929263 ~ 12943135 (-)
enpp1 LOC100380852 coding upstream 349259 12951277 ~ 12999904 (-)
G674341 NA non-coding downstream 5731 12586741 ~ 12586951 (-)
G674336 NA non-coding downstream 15015 12577442 ~ 12577667 (-)
G674334 NA non-coding downstream 16521 12575876 ~ 12576161 (-)
G674332 NA non-coding downstream 18781 12573098 ~ 12573901 (-)
G674326 NA non-coding downstream 25128 12567047 ~ 12567554 (-)
G674722 NA non-coding upstream 22407 12624425 ~ 12625843 (-)
G674732 NA non-coding upstream 40408 12642426 ~ 12642796 (-)
G674770 NA non-coding upstream 102049 12704067 ~ 12704268 (-)
G674806 NA non-coding upstream 164355 12766373 ~ 12766850 (-)
G674015 NA other downstream 308462 12283837 ~ 12284220 (-)
G673867 NA other downstream 450688 12140370 ~ 12141994 (-)
G673863 NA other downstream 566940 12018616 ~ 12025742 (-)
LOC110529377 LOC106571175 other downstream 595191 11984834 ~ 11997491 (-)
G673053 NA other downstream 1247900 11344473 ~ 11344782 (-)
LOC110529426 NA other upstream 772921 13373030 ~ 13451428 (-)
G675413 NA other upstream 882075 13484093 ~ 13484934 (-)
G675415 NA other upstream 883661 13485679 ~ 13486137 (-)
G675834 LOC106571238 other upstream 1381608 13983626 ~ 13986108 (-)

Expression


Co-expression Network