nek2 (LOC106571199)


Basic Information

Item Value
gene id nek2
gene name LOC106571199
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12604696 ~ 12610815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611564.2
GGACCAATCACATTGAAGAATTCAGGCACCAATTTGAAACCACCGCAAGGAATCCCTGCTTCCTTTTCGTCGCTTGTGTTATAGACATAAAACACGTTGTTTTGACGAGTAGTTAGCAAGCAATTTTATCAATACGTTATCGGAGAGATATAGTCAGCATTTACGTTTGCTAACGATATTTTAAGAAAGAAAACGTCCAGAATAGTAGTTATTGCTTTCGATAGATAGCTGCGTTAGCTACCTTGCATTGCATTCTGCATTTAGCTAACTAGTTATATACTAGTAACGTTAACGTTCGCCACGACAAAATGCCATCTCGTGTTGAGGATTATGAGGTGTTGTATACCATAGGGTCAGGGTCTTACGGAAAATGTCAGAAAATACGGAGGAAATCTGATGCCAAGATTCTAGTTTGGAAGGAGTTGGACTACGGCACAATGGCTGAGAGCGAGAAGCAGATGCTGGTGTCCGAAGTCAATCTCCTGCGTGAACTGAAGCATCCAAACATTGTGAGATATTATGACCGTATCATTGACCGGACCAACACCACACTGTACATCGTTATGGAGCACTGTGAAGGCGGTGACCTCTCCAGCCTCATCACCAGATGCATcaaagaaagGCGTTACTTGGAGGAGGAATTCATCATGCGAGTCATGGCACAGCTCACTCTTGCCCTGAAGGACTGCCATCGCCGGAGCAATGGTGGGGCCACAGTGCTGCACAGAGATCTTAAGCCCGCCAATATCTTCCTGGATGTCAAGCAGAATGTCAAGCTTGGTGACTTTGGTCTCGCACGTATCCTGAACCATGACACCAGTTTCGCTAAGACTTTCGTCGGGACCCCATACTACATGTCTCCTGAACAAATAAATCGCATGTCCTACAATGAGAAATCAGATATCTGGTCCTTGGGGTGCTTGTTGTATGAACTCTGTGCCTTATCGCCTCCTTTCACAGCTTATAACCAAAAAGAGCTGGCAGAGAAGATCCGAGAGGGAAAGTTTAGGAGAATCCCCTACCGGTATTCAGAGGAGCTGAATACACTCCTGTCCAGAATGCTCCATTTAAAGGACTACCTGAGGCCCTCAGTTGAGTCCATTCTCCAGAGCAGCCTGTTGGCGGACCTGGTCGCCGATGAACTTAGGCGGGCGCAGGCAAGACACCGGAGGAGGTCGGCTGATCCAGAGAAACCAAAGCCTGCAGAGTCTTCAACCACCCCTACTATTGCGGCGCTGAGGCTGAAGGAGCAGGTGCTGCGGCACAGGGAGAAGGCCCTGAAGGAGcgagaggagaggctggagcAGCGGGAGCAGGAGCTTTGTGTTCGTGAGAGACTATCAAATGAGAAGCTTGCCAGAGCGGAGAGTTTGTTGAAGAGCTACAACTTGGTGAAACAGCAGAAGGCCCTGCCACTGCTCTATTCCAATGAAATGGatgagggagaggagaacgtTTCACCTGGAAAGAAGGTCCATTTTGCCGGAGAAAGCAAAGAGAACCAGAGGCCAGATCAGAAGCAGAGTGTGAAGAGCCAGGAGCTTGGGCTGAAGAAGAGGCTGCAGGCAGCCAACATGCGGGCCCAGGCCCTGGGGGAGGTGGAGAGGCTCTATCAACTCAAGAGCTGGCAGATCCTAGGCATCCGCTAGCCCACAGAAAGTCTGCTGCTTAGGGCCTGACTATCAGTGTCATGTGGATGGATGAATATATGGTTGTCTGAGGTGTGACCCAGAAGTAGCAGGTCTCTGCTTTAGTTTTCCTGACTAACATTAGTTTCAGAGCTATTGAAACCTAGCGGTCCATTGGGAAATTATGTAGctttaatttatttgtattatgGTGATTGGTTTATACTATGGTGAAATTGCCAAAATATTGGGTGCCAGATATATTTTTAGTGGTGTTTGTGTTTTTTCAACCttgacatttaaaatgtgttGTTGATGCACAGAATTGCACTCAGGTTCTGATTTGTGAATATGTGATTTATAACtactatgtacatactgtatggtggcattaaaacatattttaagGGCAAT

Function

NR:

description
serine/threonine-protein kinase Nek2-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K20872 NEK2; NIMA (never in mitosis gene a)-related kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611564.2 True 2042 mRNA 0.47 9 12604696 12610815

Neighbor

gene id symbol gene type direction distance location
slc30a1a znt1 coding downstream 2678 12592682 ~ 12602018 (-)
rd3 LOC106571197 coding downstream 52570 12541870 ~ 12552126 (-)
si:dkey-12h9.6 LOC106571193 coding downstream 147682 12439978 ~ 12457014 (-)
capn3b can3 coding downstream 192436 12371350 ~ 12412260 (-)
churc1 churc1 coding downstream 256008 12345907 ~ 12348688 (-)
lpgat1 lpgat1 coding upstream 5064 12615879 ~ 12697323 (-)
ints7 ints7 coding upstream 86691 12697506 ~ 12707399 (-)
sytl3 sytl3 coding upstream 318448 12929263 ~ 12943135 (-)
enpp1 LOC100380852 coding upstream 340462 12951277 ~ 12999904 (-)
LOC110529421 NA coding upstream 548650 13159465 ~ 13164697 (-)
G674341 NA non-coding downstream 17745 12586741 ~ 12586951 (-)
G674336 NA non-coding downstream 27029 12577442 ~ 12577667 (-)
G674334 NA non-coding downstream 28535 12575876 ~ 12576161 (-)
G674332 NA non-coding downstream 30795 12573098 ~ 12573901 (-)
G674326 NA non-coding downstream 37142 12567047 ~ 12567554 (-)
G674722 NA non-coding upstream 13610 12624425 ~ 12625843 (-)
G674732 NA non-coding upstream 31611 12642426 ~ 12642796 (-)
G674770 NA non-coding upstream 93252 12704067 ~ 12704268 (-)
G674806 NA non-coding upstream 155558 12766373 ~ 12766850 (-)
G674015 NA other downstream 320476 12283837 ~ 12284220 (-)
G673867 NA other downstream 462702 12140370 ~ 12141994 (-)
G673863 NA other downstream 578954 12018616 ~ 12025742 (-)
LOC110529377 LOC106571175 other downstream 607205 11984834 ~ 11997491 (-)
G673053 NA other downstream 1259914 11344473 ~ 11344782 (-)
LOC110529426 NA other upstream 764124 13373030 ~ 13451428 (-)
G675413 NA other upstream 873278 13484093 ~ 13484934 (-)
G675415 NA other upstream 874864 13485679 ~ 13486137 (-)
G675834 LOC106571238 other upstream 1372811 13983626 ~ 13986108 (-)

Expression


Co-expression Network