sytl3 (sytl3)


Basic Information

Item Value
gene id sytl3
gene name sytl3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12929263 ~ 12943135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986824.1
AAGAAGAAATTGCACCCGGGGCCACTTCAACCAACCTCATTCACCTCAGCTCTGTCAAGCAGCAGTTGTGTGACAGCAGGAAGGAAGGAAACAGAAAGTGAAGTGTTTTCCTTGTTACCTTGGCTGCACATAAGAATCTGCCTCTCTCAGGGTGACCACGAGTCATACAAACAGCACTGAGGCCTCAGCTCAAGAGTGAACAAAGTGAACATCAGTCATCGGACTTTGTGAAGAGGATCCCTGTGACTGTAGGTCAGAGTTTGCTTCTTGGATGCAGCACTATGAATGGGTTAGAGAGCAGAGCGTAAGAGGTAGTGCTGGTCACCAGGGCAGAAACACATCAAGGTCTGTGATGCGAAGCGGAGAGAGCTTCTGTGAATATCGTGACGGGGACATGGGATGTCTCTGACTGTGCAGCGAAATCAACATGACTTTCATTCTGCCCTCAGTCTGGTAACAAGTGAAGACGTCGTCCAGCTTGAAGCAACATCCGGCACCCAATAAAAAGAGAAAGAGGGTGGAACAAAGGGAGGAGACAGAAGAAGaataagcgagagagagagagagaaaaggagagactagagaggtaAAGTGGGGACGAGAGAAGAAAGAAACTCACATTTTTACAGATGGATCTGGGCGTGCTCAAggctctggagagagagaaggttctGGAGGTTCTTCAGAGAGACAAACTTTTGCGCAGCACGGATGACGACAGGATAAGGAGGCTGAAGACGGAGCTACAGGAGATCCGAAGGAAAGGTGCCAAGAGTTTTGCCCGGCAGTACAGCGAAAGGACTTGCGCCCGCTGTCAGAGGCCGTTGGGAATGTTCTGGAACTCGGGCGCCGTGTGCCGAGGCTGCAGCCACCGCGTCTGCAACAAGTGTCGTGTGGGCGTGTCCGCCCTGGACTGGAAGTGTACCGTCTGCCACGCCTACAGGAAGGTTAAGATCAGGTCCGGGGAGTGGTTTTTGGAAGAAAGGGCCAAGAAATTTCCACCTGACTCGGAAAGGCATGAGACTGTTGGGGAGAAGCTACTAAAGTCTTACCAGAGGTTGAGTCATATAACAGTCGTTCCTCCAACCGCTCCACCCTATTACGATGGTCCATCCTTCAGCAGATCAGGGGGACTGAACAATTCCTTTAAAAAACCATTCACCAAGTCTATGGAGGACCTGATGGTTTCCCTCACAAGCCACATGAGAAGGTTCTCCAGGTCGCAACAGGATGTACGAGTGGAACAGGATCTTCTTACAGTGGACAACAGCATCAACAAATACAACAATCTTACCAAAGGCCCCAGTCTTACCAACCTGTTCAAGAAGAGCCGGAATGATGACCAGAGCAGTTTCTCATCAGGGGCGGATGAGGACCTTTCCCTGGGTTCAGAGTACTCATGGGGAAAGAGGGGCAGTAGTGCTAGTAGCACTGGTACAGACTGTGGTCTCTTGGAGATCAACAGAGTGACAGGGGAGCTAAAGCTCGCCATCGCCTTCAACCACATCACTTCCTGCCTGGAGATCACAATAAACGGCTGCAGAAACCTGGCATATGGAGATATCAAGAGGAAGAAGTGTCACCCGTACGTCAAAGTCTACCTACTGCCGGAGAAGTCTCAGAGCAGCAAACTGAAGACAACTATCAAGAGGAACACAACGGATCCCATTTATAATGACATTTTACAGTGCCAGATGGAGAGCCCCTTGTTGTCCAGGAGTACTCTGCAGGTGTCTGTGTGGCACTCTGCGACCCTGAAGAACAAGGTGTTTCTGGGAGAGGTCCTCGTCCCGCTGGAGGGCTGTATATTTAAGGACAGCACCACCCAGGGCTCCAACTGGTACCCCCTGTGTCCAAAGCCTGAGAGTCCAGAAGGGAATGCAGTAGAGCAGGATACAGCAGGAGAACTGCTGGTCAGAATGAAGTTCACCTCCTTGTCCCAGCCGTCCTGGGTTTGCCACACAGATGCGGTTCATATTGGACCACATGATGTTGGTCAACTGACTGTTCTTGTTACTGGTGCCAAAAATCTGCCCACTAAAGCAAACAACAGTCAGAACACCTATGTGAAAGGGTGCTTGACTCTTCCCGGGTCCAGAGAGCTGGTCCAGAGGACCCCTGTCCTGAAGAAGCCCAGTCCGGCGTGGTCTCACCAGCTGCTCTTCAGCAGAGTCACGCCCTATGACCTCCAGATCTGCACTCTGGAACTTGACCTCTGGGACCACGCCCCCTTTACCTTCTCAGACCGCCTCCTGGGCTGGGTCAGAATGGAAGCCGGGTCATCATGGCAACTGGTGCTGCAGACACCCAACATGTGGCATGACTTCAGTTTACCCATGCAAGCCAACATCAACAGCAGGAGAACATGATGTCAGAGTCAACAGGG

Function

symbol description
sytl3 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL3 (synaptotagmin like 3).

NR:

description
synaptotagmin-like protein 3

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986824.1 True 2386 mRNA 0.51 17 12929263 12943135

Neighbor

gene id symbol gene type direction distance location
ints7 ints7 coding downstream 221864 12697506 ~ 12707399 (-)
lpgat1 lpgat1 coding downstream 231940 12615879 ~ 12697323 (-)
nek2 LOC106571199 coding downstream 318448 12604696 ~ 12610815 (-)
slc30a1a znt1 coding downstream 327245 12592682 ~ 12602018 (-)
rd3 LOC106571197 coding downstream 377137 12541870 ~ 12552126 (-)
enpp1 LOC100380852 coding upstream 8142 12951277 ~ 12999904 (-)
LOC110529421 NA coding upstream 216330 13159465 ~ 13164697 (-)
LOC110529423 LOC106571212 coding upstream 377320 13320455 ~ 13331260 (-)
LOC110529426 NA coding upstream 432407 13373030 ~ 13451428 (-)
tmem151ba tmem151b coding upstream 554883 13496434 ~ 13509334 (-)
G674842 NA non-coding downstream 710 12927877 ~ 12928553 (-)
G674897 NA non-coding downstream 25770 12902491 ~ 12903493 (-)
G674877 NA non-coding downstream 57528 12870556 ~ 12871735 (-)
G674820 NA non-coding downstream 105115 12782905 ~ 12824148 (-)
G674818 NA non-coding downstream 109234 12781640 ~ 12820029 (-)
G674995 NA non-coding upstream 176193 13119328 ~ 13120250 (-)
G675036 NA non-coding upstream 239466 13182601 ~ 13182928 (-)
G675044 NA non-coding upstream 245845 13188980 ~ 13189359 (-)
G675046 NA non-coding upstream 247643 13190778 ~ 13191002 (-)
G675053 NA non-coding upstream 256501 13199636 ~ 13199905 (-)
G674015 NA other downstream 645043 12283837 ~ 12284220 (-)
G673867 NA other downstream 787269 12140370 ~ 12141994 (-)
G673863 NA other downstream 903521 12018616 ~ 12025742 (-)
LOC110529377 LOC106571175 other downstream 931772 11984834 ~ 11997491 (-)
G675413 NA other upstream 540958 13484093 ~ 13484934 (-)
G675415 NA other upstream 542544 13485679 ~ 13486137 (-)
G675834 LOC106571238 other upstream 1040491 13983626 ~ 13986108 (-)
G676077 NA other upstream 1263852 14206987 ~ 14207625 (-)

Expression


Co-expression Network