hsp90ab1 (hsp90ab1)


Basic Information

Item Value
gene id hsp90ab1
gene name hsp90ab1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13552248 ~ 13558751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124231.1
GGGGACTTGAGATATTGGCAGCATTTTATTCAAGAGAAGTCAACGGAACAAATAAAGATGCCTGAAGAAATGCGCCAAGAGGAGGAGGCTGAGACCTTTGCCTTCCAGGCAGAGATCGCTCAGCTCATGTCCCTGATCATCAACACCTTTTATTCCAACAAGGAAATCTTCCTCAGGGAGTTGATTTCCAATGCATCTGATGCTTTGGACAAAATCCGATACGAAAGTCTGACGGACCCCACCAAGCTGGACAACGGCAAGGAACTGAAGATTGACGTCATCCCCAACGTGGAGGAGCGCACCCTGACCCTAATCGACACTGGAATTGGCATGACCAAAGCTGACCTCATCAACAACCTGGGAACCATCGCGAAGTCTGGCACCAAGGCCTTCATGGAGGCCCTGCAGGCTGGAGCTGATATCTCCATGATTGGGCAGTTTGGCGTGGGTTTCTACTCTGCCTACCTGGTGGCCGAGAGGGTGACTGTCATCACTAAGCACAACGATGATGAGCAGTACATCTGGGAGTCCTCAGCCGGAGGCTCCTTCACAGTCAAGGTCGACACTGGGGAGCCCATGTTGCGTGGAACTAAGGTGATTCTGCACATGAAGGAGGACCAGACGGAGTATGTTGAGGAGAAGAGGGTCAAGGAGGTGGTCAAGAAGCACTCTCAGTTCATTGGATATCCCATCACCCTCTTCGTTGAGAAGGAGCGTGAAAAGGAGATCAGTGACGATGAGgccgaggaggaggagaaggccgagaaggaggagaaagaggagaaggaggcagAGGACAAGCCCAAGATTGAGGATGTGGGCTCTGATGACGAGGAGGACTCCAAAGACAAGGACAAGAAAAAGACCAAGAAGATCAAGGAGAAGTACATTGACCAGGAGGAGCTGAACAAGACCAAGCCCATTTGGACCAGAAACCCTGACGACATCACCATGGAGGAGTACGGAGAGTTCTACAAGAGCCTGACCAATGACTGGGAGGAACACCTGGCTGTCAAGCACTTTTCAGTGGAGGGCCAGCTGGAGTTCCGTGCTCTCCTCTTTATCCCCCGTCGCGCACCCTTCGACCTCTTtgagaacaagaagaagaagaacaacatCAAGCTGTATGTCAGGAGGGTCTTCATCATGGACAGCTGTGAGGAGCTCATCCCGGAGTACCTGAACTTTGTGCGTGGTGTGGTAGACTCTGAGGATCTCCCCCTGAACATCTCCCGAGAGATGCTGCAGCAGAGCAAGATCCTCAAGGTGATCCGCAAGAACATCGTCAAGAAGTGTATGGAGCTGTTCGGCGAgctggcagaggacagggagaactACAACAAGTTCTATGATGGCTTCTCCAAGAACCTCAAGCTGGGCATCCATGAGGACTCCCAGAACCGCAAGAAGCTGTCAGAGCTGCTGCGCTACCACAGCTCTCAGTCAGGAGACGAGCTGACCTCCCTCACGGAGTACCTCACCCGCATGAAGGACAACCAGAAATCCATCTATTACATCACTGgtgAGAGCAAGGACCAGGTGGCCAACTCTGCTTTTGTGGAGCGTGTGCGCAAGCGAGGATTCGAGGTCCTGTACATGACGGAGCCCATTGACGAGTACTGTGTCCAGCAGCTGAAGGAGTTTGACGGAAAGACCCTGGTCTCCGTGACCAAGGAGGGCCTGGAGCTGCCGGAGGACGAGGAGGAAAAGAAGAAGATGGATGAGGACAAGACAAAGTTTGAGAACCTCTGCAAGCTCATGAAGGAGATCCTGGACAAGAAAGTAGAGAAGGTGACCGTGTCAAACAGGCTGGTGTCGTCGCCCTGCTGCATTGTGACCAGCACGTATGGCTGGACGGCCAACATGGAGAGGATCATGAAGGCGCAGGCCCTGAGGGACAACTCCACCATGGGCTACATGATGGCCAAGAAACACCTGGAGATCAACCCAGACCACCCCATCGTGGAGACCCTGAGGCAGAAGGCTGACCTGGACAAGAACGACAAGGCGGTGAAGGACCTGGTAATCCTGCTTTTCGAGAccgctctgctctcctctggctTCAGCCTGGATGACCCTCAAACTCACTCCAACCGTATCTACAGGATGATCAAGCTGGGCCTGGGAATCGATGACGACGAAGTGATCCCTGAGGAGCCCACCTCCGCGCCTGCCCCAGATGAGATCCCACCTCTAGAGGGAGACGATGATGCATCACGCATGGAGGAAGTGGATTAAATGCCACTTAAAATCTACTCCTTATATAGCCTCACGTTTTCCAATCGAACATGTTTATTTGCCCTTTTTTAAATGGGTAACCTGGTCAGTGTCCTTTATGGTATAAAAAGTCTTAATTCTAGAAATGCGGTTCATTTGTTGTACAAGCTGTATGTAATAGTTAATGGTGGGCAACGCATCTGGAAAAAACAGTACCCTGTTGCACTGAGTTTTAAATATTGGACTGGTAGATGTGTGTGAACAATGGGAAATGAAACATTCCATTACTGACACGGTGTTGGGTTGGTTCTCATGTGCAACATAACATGCACGCTGCATGGAGAGTTGACTGCAAGGTTCCTTTGCCTGAGTTCAGACCTGTCTGTATTCAGTCTTTGTTTTGCAGAAATTAAAAGATGTAATACCTTAAACGTTCTA
>XM_021611214.2
TGGATACGTCCGCACAATCAAACACACAAGAGGGTATAAAGATATCGGTCTTTTAAAAGGAAATCCCTTTCTATTTTCCTGCGTCAGAGAGCAGAGGGGACTTGAGATATTGGCAGCATTTTATTCAAGAGAAGTCAACGGAACAAATAAAGATGCCTGAAGAAATGCGCCAAGAGGAGGAGGCTGAGACCTTTGCCTTCCAGGCAGAGATCGCTCAGCTCATGTCCCTGATCATCAACACCTTTTATTCCAACAAGGAAATCTTCCTCAGGGAGTTGATTTCCAATGCATCTGATGCTTTGGACAAAATCCGATACGAAAGTCTGACGGACCCCACCAAGCTGGACAACGGCAAGGAACTGAAGATTGACGTCATCCCCAACGTGGAGGAGCGCACCCTGACCCTAATCGACACTGGAATTGGCATGACCAAAGCTGACCTCATCAACAACCTGGGAACCATCGCGAAGTCTGGCACCAAGGCCTTCATGGAGGCCCTGCAGGCTGGAGCTGATATCTCCATGATTGGGCAGTTTGGCGTGGGTTTCTACTCTGCCTACCTGGTGGCCGAGAGGGTGACTGTCATCACTAAGCACAACGATGATGAGCAGTACATCTGGGAGTCCTCAGCCGGAGGCTCCTTCACAGTCAAGGTCGACACTGGGGAGCCCATGTTGCGTGGAACTAAGGTGATTCTGCACATGAAGGAGGACCAGACGGAGTATGTTGAGGAGAAGAGGGTCAAGGAGGTGGTCAAGAAGCACTCTCAGTTCATTGGATATCCCATCACCCTCTTCGTTGAGAAGGAGCGTGAAAAGGAGATCAGTGACGATGAGgccgaggaggaggagaaggccgagaaggaggagaaagaggagaaggaggcagAGGACAAGCCCAAGATTGAGGATGTGGGCTCTGATGACGAGGAGGACTCCAAAGACAAGGACAAGAAAAAGACCAAGAAGATCAAGGAGAAGTACATTGACCAGGAGGAGCTGAACAAGACCAAGCCCATTTGGACCAGAAACCCTGACGACATCACCATGGAGGAGTACGGAGAGTTCTACAAGAGCCTGACCAATGACTGGGAGGAACACCTGGCTGTCAAGCACTTTTCAGTGGAGGGCCAGCTGGAGTTCCGTGCTCTCCTCTTTATCCCCCGTCGCGCACCCTTCGACCTCTTtgagaacaagaagaagaagaacaacatCAAGCTGTATGTCAGGAGGGTCTTCATCATGGACAGCTGTGAGGAGCTCATCCCGGAGTACCTGAACTTTGTGCGTGGTGTGGTAGACTCTGAGGATCTCCCCCTGAACATCTCCCGAGAGATGCTGCAGCAGAGCAAGATCCTCAAGGTGATCCGCAAGAACATCGTCAAGAAGTGTATGGAGCTGTTCGGCGAgctggcagaggacagggagaactACAACAAGTTCTATGATGGCTTCTCCAAGAACCTCAAGCTGGGCATCCATGAGGACTCCCAGAACCGCAAGAAGCTGTCAGAGCTGCTGCGCTACCACAGCTCTCAGTCAGGAGACGAGCTGACCTCCCTCACGGAGTACCTCACCCGCATGAAGGACAACCAGAAATCCATCTATTACATCACTGgtgAGAGCAAGGACCAGGTGGCCAACTCTGCTTTTGTGGAGCGTGTGCGCAAGCGAGGATTCGAGGTCCTGTACATGACGGAGCCCATTGACGAGTACTGTGTCCAGCAGCTGAAGGAGTTTGACGGAAAGACCCTGGTCTCCGTGACCAAGGAGGGCCTGGAGCTGCCGGAGGACGAGGAGGAAAAGAAGAAGATGGATGAGGACAAGACAAAGTTTGAGAACCTCTGCAAGCTCATGAAGGAGATCCTGGACAAGAAAGTAGAGAAGGTGCCCTAGTTCATCATTAGTTAATATTGATCCCGGTGACCGTGTCAAACAGGCTGGTGTCGTCGCCCTGCTGCATTGTGACCAGCACGTATGGCTGGACGGCCAACATGGAGAGGATCATGAAGGCGCAGGCCCTGAG

Function

symbol description
hsp90ab1 Predicted to enable several functions, including ATP binding activity; disordered domain specific binding activity; and unfolded protein binding activity. Acts upstream of or within blood vessel development and leukocyte migration. Predicted to be located in dynein axonemal particle; extracellular region; and nucleus. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in cytosol; perinuclear region of cytoplasm; and plasma membrane. Is expressed in eye and head. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to several human genes including HSP90AB1 (heat shock protein 90 alpha family class B member 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124231.1 False 2655 mRNA 0.51 12 13552248 13558656
XM_021611214.2 True 2025 mRNA 0.52 12 13553115 13558751

Neighbor

gene id symbol gene type direction distance location
tmem151ba tmem151b coding downstream 42914 13496434 ~ 13509334 (-)
LOC110529426 NA coding downstream 167793 13373030 ~ 13451428 (-)
LOC110529423 LOC106571212 coding downstream 220988 13320455 ~ 13331260 (-)
LOC110529421 NA coding downstream 387551 13159465 ~ 13164697 (-)
enpp1 LOC100380852 coding downstream 552344 12951277 ~ 12999904 (-)
LOC110529434 LOC106571223 coding upstream 39625 13598376 ~ 13601561 (-)
LOC110529435 LOC106571224 coding upstream 68010 13626761 ~ 13632856 (-)
LOC110529441 LOC106571256 coding upstream 781749 14340500 ~ 14392658 (-)
LOC110529444 LOC106571255 coding upstream 837260 14396011 ~ 14471129 (-)
LOC110529446 LOC106571252 coding upstream 990930 14549681 ~ 14573584 (-)
G675434 NA non-coding downstream 2989 13549036 ~ 13549259 (-)
G675370 slc35b2 non-coding downstream 3880 13541048 ~ 13548368 (-)
G675432 NA non-coding downstream 13254 13538784 ~ 13538994 (-)
G675431 slc35b2 non-coding downstream 14493 13535173 ~ 13537755 (-)
G675430 NA non-coding downstream 17448 13534466 ~ 13534800 (-)
G675381 NA non-coding upstream 1136 13559887 ~ 13560326 (-)
G675435 NA non-coding upstream 3140 13561891 ~ 13562100 (-)
G675439 NA non-coding upstream 11814 13570565 ~ 13570814 (-)
G675440 NA non-coding upstream 12872 13571623 ~ 13572328 (-)
G675442 NA non-coding upstream 19856 13578607 ~ 13578928 (-)
G675415 NA other downstream 66111 13485679 ~ 13486137 (-)
G675413 NA other downstream 67314 13484093 ~ 13484934 (-)
lpgat1 lpgat1 other downstream 854925 12615879 ~ 12697323 (-)
G674015 NA other downstream 1268028 12283837 ~ 12284220 (-)
G675834 LOC106571238 other upstream 424875 13983626 ~ 13986108 (-)
G676077 NA other upstream 648236 14206987 ~ 14207625 (-)
G676178 NA other upstream 729098 14287849 ~ 14288345 (-)
G676635 LOC106571254 other upstream 952839 14508329 ~ 14516528 (-)
G679087 NA other upstream 2873870 16432621 ~ 16433014 (-)

Expression

hsp90ab1(hsp90ab1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1000.
End of interactive chart.

hsp90ab1(hsp90ab1) Expression in each Bioproject

Bar chart with 21 bars.
hsp90ab1(hsp90ab1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40000.
End of interactive chart.

Co-expression Network