LOC110529435 (LOC106571224)


Basic Information

Item Value
gene id LOC110529435
gene name LOC106571224
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13626761 ~ 13632856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611607.2
TCAAGGAACATAGCAGCTAACTTGGCTAATCTTgtgagctagctagttaactaggtGGTCTTGCTGTCTATGGTATCTAGGCAGAATCCTGACTTATCAGCCTCTGAAGCTGCTATTGAATCTGATCAATTTCTAAGACTGAAATTGAATCTGATCAGGAATGGAGCTCACTTACTCTGTAAATGTAATCCACAACATATGAACTGTCTCTTATAATTATACACAAATCAGTTATGCAAGCTAACAACCAGTACAGATAACAAGCTAGTATGCTAACAAGACTACATAGCTAACTAGTTAGCTCGTTTGCTTACAAGACTAGCTGAGTTAGCTACAGTGTTACTTGCATGCGATTTGCTGTGTTCTTGGGTGCGGCACGCAGCGTAGGAGAAAGGGCTGCCTGTCGGGCATCGTTCAGGGCTTAAATGTCCACAAGCATGGGTGTGTAGGGCAGACTAAACATCCGAGAATACAAAGAAAGAGGCATCATGGCCGAAATATCTCTGTATCTCACCAACGTGAATGTGTCTTTGGGCCAAACGATGGACGTAGAGAAGatcCCCAGCACAGGGAAGGACTTTGAGAGTGTCGAGCTGGGAGACCTGGAGAAGGGGGATCAGAAAGAAGAGAAAGCCCCACGAAGGATCATCCATTTCTCTAGCGGAGAAACCATGGAAGAATACAGTACagacgaggaggagggggaggacaagGAACCAGAGAAGAAGGACCTACTGTCCCCCCCTTTCGATGCGAACAAGCTGACCTGGGGCCCGTACTTCTGGTTCCATATGTGGAGAGCAGCTACCTCCACTGTTTCAGCTTGTGACTACCTCGGGGAGAGGATGGCCTCGCTCTTTGGAATCACATCGGCCAAATACCAGTACGCCATCGACGAGTATTACAGGATGAGGAAAGAGaaggaggaggaagatgaggacaaCCGGTTATCAGAGGAGGCGGAGCAATACTTTGTTGAGAATCAGGATGAGGAGATCCATGGACCAATGACGGATCAGCCAGAGGGAACCGCTACCACCCCCCATTCCACAGACACCTATCAGGTTGAGAAAGAGGCCAAGGCCACGCCTACTGCCATCAGGGTCCCAGCCATTGTCACGACAACAACCTAACTAACTTCTGGAGAGATGATTATGTTTTttccatgtttgttttgttttaatttGTCAAGGAGGCGGAGGCGCTCTGGGGTCTGTCTCTCTGATAGTGCTGAACGATTAACTGAAATTTTGTGTGCACAttgcacagtttctctagagataaatcagatccagactgaactgtgcgatgtagtacggcgttgtagtttccaacaggccaatattctacatagtttagcgtgtaaaatgtggtaattaactataatacccataatccattgcgcatgTACTTGTCCAGTCTGTTTCTTTTACTGCTTCTACGGAAGAGAGAAGAATGCGAGATTGTGAGGTGATCtagagagcagctgttgcttTGCGGGGTATCTacttgaaaatacatgatctaagtgattgatattGGTAGGAATCACTTGGTATTCAGCCGtcaaaagtatgccttatttacattTTAAGAACTACATTATTAAATAGGGATTTTGTcaagcagcagctctatagataTGACTTGGAATTGAATATAaattaatcaaataaaacaaatgtaatatacacaactgaaatatttgatTAAAGTCACGTGAattaaatgatggttaataagtgatgggccgtcactaccatcatgggacttttattaataGTTGTATTCTGTggtacagcattcaacccacataatgcatattGCATTTAATGTTTGCAAAAATTATTGAAACTGAAATTGAAAACCATAATTATTTTTTAACGATCGAACCGAAACAGAACCGACCTCAAAAaacactaatcgctcagcactactctCTGAGCTCCCATTTGGTTGTGGATATGAAGGAGCCATCTATAAACCTGGGAGTCAGACCTGCTACTGCTTTAGCCCACGCCTCTGTCATGTCATTAATACCAGACTACAAAGAATTATGACAACAAACCGTGAAGGACGATGACAGAGTAGTGACAAAGAAGTTAGTCGGTTGAAGCAGAAGCTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGGCTATCCTTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGGCTAGCATTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGGGCAGTGCCACTGTCCTTTCTGTAGTCCTATAGTACAGGCACAGTGTGGTACGGTAGTAGTACTGTGTCGTTTAACTATGTGTCTCCAGTGGCCTTACCCCCAACTGGAGGCTGGTCCTAACATTCCAACCTCGTGTCTATCTATCTGGTGCCTCTGAAGGGCTGTGTTTTTTTTACCTAAACCACAGAGCCaagtagtagcctaaaccttAATGCACTCGAACACAGGAAGCCTTCCTCCTTTATACACTACTACTAGCATGCCACTCACTTTGTTTTAATTTAGACAACATTTGTTGAAATACTTTGTTGAGCACTGACCTAAACATGGTGTGTTGTTCCCCTGTGTAGCATTACTGGCTTGTGGTCACTTGGTGACTTGTAATTTGGAACGTCTTTTCAGGCTGTTGGTGTAGCTGAGATTTTGTAAAGGCAGTATAATCTGTCATATTTGTTTTTACTAGTCCATTGGCCTAATGCACAGTTGCCCTTGTTGTAAAGGAACTTTATGTTAAACTTTTATTTTGATATTcacatatttattattatttttgtattttctgaGCACTTTTTTACAACGTACTTTATGTAACAACACCTTGATAAACTGTTAATAAATATACTTAACTATGCTTTAA
>XM_021611606.2
TTCAAGGAACATAGCAGCTAACTTGGCTAATCTTgtgagctagctagttaactaggtGGTCTTGCTGTCTATGGTATCTAGGCAGAATCCTGACTTATCAGCCTCTGAAGCTGCTATTGAATCTGATCAATTTCTAAGACTGAAATTGAATCTGATCAGGAATGGAGCTCACTTACTCTGTAAATGTAATCCACAACATATGAACTGTCTCTTATAATTATACACAAATCAGTTATGCAAGCTAACAACCAGTACAGATAACAAGCTAGTATGCTAACAAGACTACATAGCTAACTAGTTAGCTCGTTTGCTTACAAGACTAGCTGAGTTAGCTACAGTGTTACTTGCATGCGATTTGCTGTGTTCTTGGGTGCGGCACGCAGCGTAGGAGAAAGGGCTGCCTGTCGGGCATCGTTCAGGGCTTAAATGTCCACAAGCATGGGTGTGTAGGGCAGACTAAACATCCGAGAATACAAAGAAAGAGGCATCATGGCCGAAATATCTCTGTATCTCACCAACGTGAATGTGTCTTTGGGCCAAACGATGGACGTAGAGAAGatcCCCAGCACAGGGAAGGACTTTGAGAGTGTCGAGCTGGGAGACCTGGAGAAGGGGGATCAGAAAGAAGAGAAAGCCCCACGAAGGATCATCCATTTCTCTAGCGGAGAAACCATGGAAGAATACAGTACagacgaggaggagggggaggacaagGAACCAGAGAAGAAGGACCTACTGTCCCCCCCTTTCGATGCGGTGAGGAACAAGCTGACCTGGGGCCCGTACTTCTGGTTCCATATGTGGAGAGCAGCTACCTCCACTGTTTCAGCTTGTGACTACCTCGGGGAGAGGATGGCCTCGCTCTTTGGAATCACATCGGCCAAATACCAGTACGCCATCGACGAGTATTACAGGATGAGGAAAGAGaaggaggaggaagatgaggacaaCCGGTTATCAGAGGAGGCGGAGCAATACTTTGTTGAGAATCAGGATGAGGAGATCCATGGACCAATGACGGATCAGCCAGAGGGAACCGCTACCACCCCCCATTCCACAGACACCTATCAGGTTGAGAAAGAGGCCAAGGCCACGCCTACTGCCATCAGGGTCCCAGCCATTGTCACGACAACAACCTAACTAACTTCTGGAGAGATGATTATGTTTTttccatgtttgttttgttttaatttGTCAAGGAGGCGGAGGCGCTCTGGGGTCTGTCTCTCTGATAGTGCTGAACGATTAACTGAAATTTTGTGTGCACAttgcacagtttctctagagataaatcagatccagactgaactgtgcgatgtagtacggcgttgtagtttccaacaggccaatattctacatagtttagcgtgtaaaatgtggtaattaactataatacccataatccattgcgcatgTACTTGTCCAGTCTGTTTCTTTTACTGCTTCTACGGAAGAGAGAAGAATGCGAGATTGTGAGGTGATCtagagagcagctgttgcttTGCGGGGTATCTacttgaaaatacatgatctaagtgattgatattGGTAGGAATCACTTGGTATTCAGCCGtcaaaagtatgccttatttacattTTAAGAACTACATTATTAAATAGGGATTTTGTcaagcagcagctctatagataTGACTTGGAATTGAATATAaattaatcaaataaaacaaatgtaatatacacaactgaaatatttgatTAAAGTCACGTGAattaaatgatggttaataagtgatgggccgtcactaccatcatgggacttttattaataGTTGTATTCTGTggtacagcattcaacccacataatgcatattGCATTTAATGTTTGCAAAAATTATTGAAACTGAAATTGAAAACCATAATTATTTTTTAACGATCGAACCGAAACAGAACCGACCTCAAAAaacactaatcgctcagcactactctCTGAGCTCCCATTTGGTTGTGGATATGAAGGAGCCATCTATAAACCTGGGAGTCAGACCTGCTACTGCTTTAGCCCACGCCTCTGTCATGTCATTAATACCAGACTACAAAGAATTATGACAACAAACCGTGAAGGACGATGACAGAGTAGTGACAAAGAAGTTAGTCGGTTGAAGCAGAAGCTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGGCTATCCTTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGCCTAGCCTTCAGTGATCCGACTACCAGGGCTAGCATTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGATCCGACTACCAGGGCTAGCCTTCAGTGGGCAGTGCCACTGTCCTTTCTGTAGTCCTATAGTACAGGCACAGTGTGGTACGGTAGTAGTACTGTGTCGTTTAACTATGTGTCTCCAGTGGCCTTACCCCCAACTGGAGGCTGGTCCTAACATTCCAACCTCGTGTCTATCTATCTGGTGCCTCTGAAGGGCTGTGTTTTTTTTACCTAAACCACAGAGCCaagtagtagcctaaaccttAATGCACTCGAACACAGGAAGCCTTCCTCCTTTATACACTACTACTAGCATGCCACTCACTTTGTTTTAATTTAGACAACATTTGTTGAAATACTTTGTTGAGCACTGACCTAAACATGGTGTGTTGTTCCCCTGTGTAGCATTACTGGCTTGTGGTCACTTGGTGACTTGTAATTTGGAACGTCTTTTCAGGCTGTTGGTGTAGCTGAGATTTTGTAAAGGCAGTATAATCTGTCATATTTGTTTTTACTAGTCCATTGGCCTAATGCACAGTTGCCCTTGTTGTAAAGGAACTTTATGTTAAACTTTTATTTTGATATTcacatatttattattatttttgtattttctgaGCACTTTTTTACAACGTACTTTATGTAACAACACCTTGATAAACTGTTAATAAATATACTTAACTATGCTTTAA

Function

NR:

description
protein FAM177A1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611607.2 False 3127 mRNA 0.44 5 13626761 13632855
XM_021611606.2 True 3134 mRNA 0.44 5 13626761 13632856

Neighbor

gene id symbol gene type direction distance location
LOC110529434 LOC106571223 coding downstream 25200 13598376 ~ 13601561 (-)
hsp90ab1 hsp90ab1 coding downstream 68010 13552248 ~ 13558751 (-)
tmem151ba tmem151b coding downstream 117427 13496434 ~ 13509334 (-)
LOC110529426 NA coding downstream 242306 13373030 ~ 13451428 (-)
LOC110529423 LOC106571212 coding downstream 295501 13320455 ~ 13331260 (-)
LOC110529441 LOC106571256 coding upstream 707644 14340500 ~ 14392658 (-)
LOC110529444 LOC106571255 coding upstream 763155 14396011 ~ 14471129 (-)
LOC110529446 LOC106571252 coding upstream 916825 14549681 ~ 14573584 (-)
LOC110529453 LOC105017813 coding upstream 1090916 14723772 ~ 14748569 (-)
LOC110529452 LOC106571249 coding upstream 1123135 14755991 ~ 14850443 (-)
G675463 NA non-coding downstream 12333 13614219 ~ 13614428 (-)
G675458 NA non-coding downstream 17733 13608564 ~ 13609028 (-)
G675451 NA non-coding downstream 29243 13597211 ~ 13597518 (-)
G675449 LOC100136058 non-coding downstream 29642 13596237 ~ 13597119 (-)
G675445 NA non-coding downstream 44576 13581882 ~ 13582185 (-)
G675511 NA non-coding upstream 60804 13693660 ~ 13693868 (-)
G675556 NA non-coding upstream 83378 13716234 ~ 13719093 (-)
G675588 NA non-coding upstream 123556 13756412 ~ 13756657 (-)
G675651 NA non-coding upstream 171726 13804582 ~ 13804807 (-)
G675668 NA non-coding upstream 189195 13822051 ~ 13822263 (-)
G675415 NA other downstream 140624 13485679 ~ 13486137 (-)
G675413 NA other downstream 141827 13484093 ~ 13484934 (-)
lpgat1 lpgat1 other downstream 929438 12615879 ~ 12697323 (-)
G674015 NA other downstream 1342541 12283837 ~ 12284220 (-)
G675834 LOC106571238 other upstream 350770 13983626 ~ 13986108 (-)
G676077 NA other upstream 574131 14206987 ~ 14207625 (-)
G676178 NA other upstream 654993 14287849 ~ 14288345 (-)
G676635 LOC106571254 other upstream 878734 14508329 ~ 14516528 (-)
G679087 NA other upstream 2799765 16432621 ~ 16433014 (-)

Expression


Co-expression Network