LOC110529446 (LOC106571252)



Basic Information


Item Value
gene id LOC110529446
gene name LOC106571252
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14549681 ~ 14573584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021611617.2
GATCCGTCTCAAAAACGGGTTCTCATTGGGCTACCGTTTTGTTAGACACGCCCGTTGGTCTGATTTGGTTGAAGGCATAGATTATTTCCCTGCCCGAATATCTTCGTAAGGTATTTACTCGGTGGCGGATTGGAACCAGGTAAAGGTGTCTGGATAACATACCTGTACCTCCACCCACCTGCCCAAAGATTATAACTATCGTTATACACGATCAGTCCCCACACCGTTGTCCCCTTCTCACATCTTCGGACTTTCTTTGAAACTGCAAGCGACAGTTTGAACATACGATAACTCACAAACATGGATAAAACGGAGCTGATTCAGAAAGCCAAGCTGGCCGAACAGGCGGAGCGTTACGACGACATGGCTTCGTCCATGAAGGAGGTAACGGAGAAGGGTGCAGAGCTGTCATGCGAGGAGAGGAACCTTCTCTCGGTCGCCTACAAGAATGTTGTCGGGGCCCGGAGGTCTGCATGGCGGGTGATCTCCGCCATCGAGCAGAAGACAGAGGGCAGCGACAAGAAGCTTCAGATGGTCAAGGAGTACCGGGAGAAGGTGGAGACAGAGTTACGAGACATCTGCAACGATGTATTGGGGCTGCTGAGCAAATATTTGATTGAAAATGCCCCTAATGCAGAGAGCAAAGTGTTCTATTTGAAGATGAAGGGAGACTACTACAGATACCTGGCTGAGGTGGCCTCTGGAGACGACAAGAAGGAGACGATATCCAACTCTCAAGACTCCTACCAGGAGGCGTTTGATATCAGCAAGAAGGAGATGCAGCCCACACATCCCATCCGCCTGGGCCTGGCCCTCAACTTCTCTGTCTTCTTCTACGAGATCCTAAACTCTCCAGAGAAGGCCTGCTCACTGGCCAAACAGGCCTTCGACGATGCCATTGCCGAGCTCGACACGCTGAGCGAAGACTCGTACAAAGACAGTACCCTCATCATGCAGTTGCTTAGAGACAACCTCACACTATGGACGTCTGACAATGCAGCAGATGAGCCAGAGGCTGGAGATGGAGAGAACTGAGATACTCCCTGTCAACCCTCGCCaagaaatacaacaaaaaaaaatgaggaaaacaatcatttttaCACCTTCATTCCTTATTGTTCCACTTGAAATGATTCTAGTAATGAATGCCAGTCGTACAATggagctgcagtgtgtgtgtgtgacatgaaTCATTTTAGTTTTCACCACGACTCTGCTTTTTGGTATGAAGAAAAGCTCAATTAAGTAAATAATATTATCGCCATGCCTCAGTTTGCTTGTCCCCGCCTTCCTAATGTGCAGTttctgctttaaaaaaatattagcTTCACTTTAACTGTCTGTTCAACATGACAatataggatgtgtgtgtgtccagaaaGATCGGTTTTCTGAATTTTGAAAGGCCATTTGCAAACGGCAAGTATCATGCCGCCTGGGCATATGGTGGGGAGGGAAAGGTATGTCAAGCTGACCCAAATTTGACAGGAATTCTGGCTGCCTCCACTGTCCCCCTGTGTGTTGGTCTTCCAAAAAGGTTGCTAGGTAGTTGCATCTGTCAACACCTGCTGGCCCATGAAAGCCAACCTGACATATTTGgtttatcccaaatggcaccctattcctttttaTAATGCACTagtattgaccagagccctcgtCAAACCTAATGCACTATGAAAGGTAatggggtgctatttgggatacaaATTGTCTGGTAACTTGAACACTCCTGAAACCTGTATTTTATGAATCTGTGGGGGCTATCCAACCAGTGGTTGCATCCCTAtcacctttatagtgcactacttttgaccagggcccctaggGCTGTGGACTaaagtaaagtagtgcactattgaaggaatagggtgctatttgagatgTTAACTGTCAACAGAGCAAGTCCTATCCATGGGCTCTTGTAACAAGGTCTCTCCCTCCACGGTTACAAAACACTCCTTCCTAGTTATATTATTCACCTCAATGTGTTACTTTGTAGCATGTCTGACAATAAAAAGTTGGtactttaagacaaaaaaaagaatGTGGAATGGCAATAGAATAAGTGCATGCATGCCCCTTTAATTTTTTTCACTGTACACTGGAATGGGGAATCAATATTGCATACAGAGTCCCGTTTTTGTTCAGTACTTTTCTTTGCAGGTTTGTGCACATGTCAGAGGGTGTTTGGTTTGTCCAGTGATTGTCATTAGAGATTGAGACCACTAGTGTTTTTGCTAATCATTGATTGTAGCCCCCAAACCTTTGTGAGAATGTTTAATGCCCTGATGTTATGTAACACCTATGTAACATGAATAAAAATGACATTTTGTAAACCATAA
>XM_021611616.2
TGATTCTTGTTTTTAACAGTGTTGGTTGATCCGTCTCAAAAACGGGTTCTCATTGGGCTACCGTTTTGTTAGACACGCCCGTTGGTCTGATTTGGTTGAAGGCATAGATTATTTCCCTGCCCGAATATCTTCGTAAGGTATTTACTCGGTGGCGGATTGGAACCAGGTGTCTGGATAACATACCTGTACCTCCACCCACCTGCCCAAAGATTATAACTATCGTTATACACGATCAGTCCCCACACCGTTGTCCCCTTCTCACATCTTCGGACTTTCTTTGAAACTGCAAGCGACAGTTTGAACATACGATAACTCACAAACATGGATAAAACGGAGCTGATTCAGAAAGCCAAGCTGGCCGAACAGGCGGAGCGTTACGACGACATGGCTTCGTCCATGAAGGAGGTAACGGAGAAGGGTGCAGAGCTGTCATGCGAGGAGAGGAACCTTCTCTCGGTCGCCTACAAGAATGTTGTCGGGGCCCGGAGGTCTGCATGGCGGGTGATCTCCGCCATCGAGCAGAAGACAGAGGGCAGCGACAAGAAGCTTCAGATGGTCAAGGAGTACCGGGAGAAGGTGGAGACAGAGTTACGAGACATCTGCAACGATGTATTGGGGCTGCTGAGCAAATATTTGATTGAAAATGCCCCTAATGCAGAGAGCAAAGTGTTCTATTTGAAGATGAAGGGAGACTACTACAGATACCTGGCTGAGGTGGCCTCTGGAGACGACAAGAAGGAGACGATATCCAACTCTCAAGACTCCTACCAGGAGGCGTTTGATATCAGCAAGAAGGAGATGCAGCCCACACATCCCATCCGCCTGGGCCTGGCCCTCAACTTCTCTGTCTTCTTCTACGAGATCCTAAACTCTCCAGAGAAGGCCTGCTCACTGGCCAAACAGGCCTTCGACGATGCCATTGCCGAGCTCGACACGCTGAGCGAAGACTCGTACAAAGACAGTACCCTCATCATGCAGTTGCTTAGAGACAACCTCACACTATGGACGTCTGACAATGCAGCAGATGAGCCAGAGGCTGGAGATGGAGAGAACTGAGATACTCCCTGTCAACCCTCGCCaagaaatacaacaaaaaaaaatgaggaaaacaatcatttttaCACCTTCATTCCTTATTGTTCCACTTGAAATGATTCTAGTAATGAATGCCAGTCGTACAATggagctgcagtgtgtgtgtgtgacatgaaTCATTTTAGTTTTCACCACGACTCTGCTTTTTGGTATGAAGAAAAGCTCAATTAAGTAAATAATATTATCGCCATGCCTCAGTTTGCTTGTCCCCGCCTTCCTAATGTGCAGTttctgctttaaaaaaatattagcTTCACTTTAACTGTCTGTTCAACATGACAatataggatgtgtgtgtgtccagaaaGATCGGTTTTCTGAATTTTGAAAGGCCATTTGCAAACGGCAAGTATCATGCCGCCTGGGCATATGGTGGGGAGGGAAAGGTATGTCAAGCTGACCCAAATTTGACAGGAATTCTGGCTGCCTCCACTGTCCCCCTGTGTGTTGGTCTTCCAAAAAGGTTGCTAGGTAGTTGCATCTGTCAACACCTGCTGGCCCATGAAAGCCAACCTGACATATTTGgtttatcccaaatggcaccctattcctttttaTAATGCACTagtattgaccagagccctcgtCAAACCTAATGCACTATGAAAGGTAatggggtgctatttgggatacaaATTGTCTGGTAACTTGAACACTCCTGAAACCTGTATTTTATGAATCTGTGGGGGCTATCCAACCAGTGGTTGCATCCCTAtcacctttatagtgcactacttttgaccagggcccctaggGCTGTGGACTaaagtaaagtagtgcactattgaaggaatagggtgctatttgagatgTTAACTGTCAACAGAGCAAGTCCTATCCATGGGCTCTTGTAACAAGGTCTCTCCCTCCACGGTTACAAAACACTCCTTCCTAGTTATATTATTCACCTCAATGTGTTACTTTGTAGCATGTCTGACAATAAAAAGTTGGtactttaagacaaaaaaaagaatGTGGAATGGCAATAGAATAAGTGCATGCATGCCCCTTTAATTTTTTTCACTGTACACTGGAATGGGGAATCAATATTGCATACAGAGTCCCGTTTTTGTTCAGTACTTTTCTTTGCAGGTTTGTGCACATGTCAGAGGGTGTTTGGTTTGTCCAGTGATTGTCATTAGAGATTGAGACCACTAGTGTTTTTGCTAATCATTGATTGTAGCCCCCAAACCTTTGTGAGAATGTTTAATGCCCTGATGTTATGTAACACCTATGTAACATGAATAAAAATGACATTTTGTAAACCATAA

Function


NR:

description
14-3-3 protein zeta-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004497 monooxygenase activity molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021611617.2 False 2345 mRNA 0.45 6 14549681 14573557
XM_021611616.2 True 2366 mRNA 0.45 6 14549681 14573584

Neighbor


gene id symbol gene type direction distance location
LOC110529444 LOC106571255 coding downstream 78552 14396011 ~ 14471129 (-)
LOC110529441 LOC106571256 coding downstream 157023 14340500 ~ 14392658 (-)
LOC110529435 LOC106571224 coding downstream 916825 13626761 ~ 13632856 (-)
LOC110529434 LOC106571223 coding downstream 948120 13598376 ~ 13601561 (-)
hsp90ab1 hsp90ab1 coding downstream 990930 13552248 ~ 13558751 (-)
LOC110529453 LOC105017813 coding upstream 150188 14723772 ~ 14748569 (-)
LOC110529452 LOC106571249 coding upstream 182407 14755991 ~ 14850443 (-)
LOC110529455 LOC106571248 coding upstream 315213 14888797 ~ 14901607 (-)
LOC110529190 LOC106571247 coding upstream 335291 14908875 ~ 14965313 (-)
LOC110529456 LOC106571246 coding upstream 398030 14971614 ~ 14980854 (-)
G676649 NA non-coding downstream 16240 14533213 ~ 14533441 (-)
G676648 NA non-coding downstream 16729 14532700 ~ 14532952 (-)
G676646 NA non-coding downstream 17430 14529486 ~ 14532251 (-)
G676645 NA non-coding downstream 20227 14529228 ~ 14529454 (-)
G676635 LOC106571254 non-coding downstream 39253 14508329 ~ 14516528 (-)
G676691 NA non-coding upstream 28931 14602515 ~ 14602782 (-)
G676696 NA non-coding upstream 42101 14615685 ~ 14746960 (-)
G676705 NA non-coding upstream 59609 14633193 ~ 14635877 (-)
G676717 NA non-coding upstream 103370 14676954 ~ 14684085 (-)
G676722 tieg3 non-coding upstream 120282 14693866 ~ 14695835 (-)
G676178 NA other downstream 261336 14287849 ~ 14288345 (-)
G676077 NA other downstream 342056 14206987 ~ 14207625 (-)
G675834 LOC106571238 other downstream 563573 13983626 ~ 13986108 (-)
G675415 NA other downstream 1063544 13485679 ~ 13486137 (-)
G679087 NA other upstream 1859037 16432621 ~ 16433014 (-)
G679210 LOC106571290 other upstream 2051506 16625090 ~ 16630259 (-)
G679471 NA other upstream 2539959 17113543 ~ 17114528 (-)
G681659 NA other upstream 4217646 18791230 ~ 18792137 (-)
G684844 NA other upstream 6905182 21478766 ~ 21479203 (-)

Expression



Co-expression Network