LOC110529453 (LOC105017813)


Basic Information

Item Value
gene id LOC110529453
gene name LOC105017813
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14723772 ~ 14748569 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984837.1
ATGCATCTCGGACTTGATGAGCCGGCGCGAGAATGTCAGTATAATCCGATCTGCACGCGCAACTCATCGTCTATGGAGACCTCGGGGCACAAAAAGAAGAGGACTCCCCGCAGGAAGTGGCAGATCTTCCCTGGCCGAAATAGATTCTACTGTAATGGAAGGGTCATGATGGCGAGACAGACTGGGGTCTTCTACCTAACCCTGATCCTCATCATGGTCACCAGCGGGCTTTTCTTCGCATTCGACTGCCCGTTCCTGGCGTCCAACCTGACCCCGGCCATCCCGGTGATCGGAGGGGTGCTGTTTGTCTTTGTTCTGGGGATGCTGTTCAGAGCCAGCTTCAGTGACCCGGGAGTCCTGCCCCGTGCCACACCCGACGAGGCTGCCGACCTGGAGAGACAGATTGACGCCTCTAATGGCCCCAGTGGTCCAGGGTACAGGCCGCCCCCGAGGATCAGAGAAGTGGTCATCAACGGGCAGACGGTCAAGCTTAAGTACTGCTTCACCTGCAAGATCTTCAGGCCCCCACGGGCCTCGCACTGCAGCCTGTGTGACAACTGTGTAGagcGTTTTGACCACCACTGTCCCTGGGTGGGGAACTGTGTTGGGAAGAGGAACTACCGTTTCTTCTACCTCTtcatcctgtccctctccttcctcaccgTCTTCATCTTCGCCTTCGTTATTACACACGTCATCCTGAGATCCAACCGGACAGGCTTCCTCAGCGCACTCAAAGACAGCCCTGCCAGTGTGCTGGAGGTGCTGGTGTGTTTCTTCTCGGTGTGGTCCATTATGGGCCTGTCGGGCTTCCACACCTACCTCATCAGCTCCAATCAGACCACCAACGAGGacATTAAAGGCTCGTGGTCGACCAAACGGGCGAAGGACAACTACAACCCCTACAGCTACGGGAACATCCTGACCAACTGCTGTGCTGCCCTTTGTGGTCCTCTTCCACCCAGTCTTATTGACAGAAGAGGCTTCATCCAGCCAGACACACCCCAGCCTGTGTCACACTCCAACGGGAGCAGCATGTACAACTCCACCCAGCTTCAATCTCACATGTGTGACCAAGAGCACTGCATTCAGAGCACCAAATTCGTTTTGCAGGCTGCCGCTACCCCTCTGCTCCACAGCGACCCTGTCATGATGGGCGGAGAGGGACCCACTCTTCCTGGGAAGAGTTCCCTGGGGGGCCCCTGTGCCTCACTGACCCCCAGCCAGCCTTCCCTGCCCTCCTCCATGCCTGGCCTGGGCTGTGCGGGGGACATGCTGACCCTGAGGGACCCAGACACCCACTGCCACCACCATCACTTTGTCAGCCCTGAGGAGACGCCCTCGCCCGGCCCCATGCCTCTGACTCTGCCCTGCCCCGCCCACATGACCCACGGGGGACACATGAACCCGGCCCAGCTCTACGACCCTGCCAGCCAGGACTCTCTACATGAGGACTCTGTCAGGGGCCTTGTCAAACTCAGCTCTGTCTGAGACTCTCCCCCTGGCTTTTTGGAATCACTACTCAGACTCTGTCAGCGTGCCAAATATTCAATATGTAGCACTACttttaaaaagtagtgcactatatagggaatagcgtgccatttagGACGCTACCCCAGCCCCCCCGCTCCACACTGCCGGCTCAGTACCAAAGCCATAATTCCTGTTCCCCTAACATTCCatcccagccctccctccctccttcccatccAGATTTGTGCCCCCCACCTGTTGAGATAAGCTATTCTAGTGCCAAACAAACAGAGCCTCAGTCTCCACTGCACTTGACCGGGACCAAAATCAAGCTTCTGAATCCCCCTTCCTCTTCACAGTAGTATACCTAGTGCCCTACCAGGAGTCTACCAGGCCTCGATACAGGTCCAGGCTTCTGCCCAAGGCTCACGACTTGTGCTCTTTTGGGGGAAACCATCTACCTGGACCAGGCGGTCATTGTCCGGAAATGAAACTGACTCGCTCTCCTCTCGTCAGCCAAACCGACGTTCCAAGGCAGTTGCCATTTTGGTTTGCTGACATCCAAGGACACGCACAGCAGGACAAGGTCTGTTGATTAGCTGGAAAGACATGAATCAGGTCtaaatataggacttgtttataGTTTGATACGTGTCATGTGTCCCGAGTCAAGTGACACTCTTTTATACAATAGTAATGGAAACAGCCAAGCAGTGTTGGCCCTGAACACAGAAgatgtcacttcctgtttcaGATTGTGTCAACACTGTATGTGTTGATTGGTAGTGTTCATCAGTCCGTTCCGGTGTCGGTGTGACGCTAGCTGCATTACCTTTTTGTTTCGTTCAAATGTGATGCCAAAACATCatgcctgcatcccaaatagcaccctctctatttagtgcactactttttaccagggccaaAAGGACATtggaaaaagtagtgcactatatagggaatagggttccatttgggacagagatAATAAGTAATGTGATGATTGTACCAAGAAATTCTCATttacttatatatatttttttttctctcccctttttctccccaatttcatggtgtccaattttttttttttttttagtagctactatcttgtctcatcgctacaactcccgtacg
>XM_036984841.1
ACGGAGCACGTCTTTAACCCCATTTATCAGCTGCCCCTGAATTCTTTGTATTGTTTTGCAAGGTGCACTATTTACAGATGCATCTCGGACTTGATGAGCCGGCGCGAGAATGTCAGTATAATCCGATCTGCACGCGCAACTCATCGTCTATGGAGACCTCGGGGCACAAAAAGAAGAGGACTCCCCGCAGGAAGTGGCAGATCTTCCCTGGCCGAAATAGATTCTACTGTAATGGAAGGGTCATGATGGCGAGACAGACTGGGGTCTTCTACCTAACCCTGATCCTCATCATGGTCACCAGCGGGCTTTTCTTCGCATTCGACTGCCCGTTCCTGGCGTCCAACCTGACCCCGGCCATCCCGGTGATCGGAGGGGTGCTGTTTGTCTTTGTTCTGGGGATGCTGTTCAGAGCCAGCTTCAGTGACCCGGGAGTCCTGCCCCGTGCCACACCCGACGAGGCTGCCGACCTGGAGAGACAGATTGACGCCTCTAATGGCCCCAGTGGTCCAGGGTACAGGCCGCCCCCGAGGATCAGAGAAGTGGTCATCAACGGGCAGACGGTCAAGCTTAAGTACTGCTTCACCTGCAAGATCTTCAGGCCCCCACGGGCCTCGCACTGCAGCCTGTGTGACAACTGTGTAGGATCCAACCGGACAGGCTTCCTCAGCGCACTCAAAGACAGCCCTGCCAGTGTGCTGGAGGTGCTGGTGTGTTTCTTCTCGGTGTGGTCCATTATGGGCCTGTCGGGCTTCCACACCTACCTCATCAGCTCCAATCAGACCACCAACGAGGacATTAAAGGCTCGTGGTCGACCAAACGGGCGAAGGACAACTACAACCCCTACAGCTACGGGAACATCCTGACCAACTGCTGTGCTGCCCTTTGTGGTCCTCTTCCACCCAGTCTTATTGACAGAAGAGGCTTCATCCAGCCAGACACACCCCAGCCTGTGTCACACTCCAACGGGAGCAGCATGTACAACTCCACCCAGCTTCAATCTCACATGTGTGACCAAGAGCACTGCATTCAGAGCACCAAATTCGTTTTGCAGGCTGCCGCTACCCCTCTGCTCCACAGCGACCCTGTCATGATGGGCGGAGAGGGACCCACTCTTCCTGGGAAGAGTTCCCTGGGGGGCCCCTGTGCCTCACTGACCCCCAGCCAGCCTTCCCTGCCCTCCTCCATGCCTGGCCTGGGCTGTGCGGGGGACATGCTGACCCTGAGGGACCCAGACACCCACTGCCACCACCATCACTTTGTCAGCCCTGAGGAGACGCCCTCGCCCGGCCCCATGCCTCTGACTCTGCCCTGCCCCGCCCACATGACCCACGGGGGACACATGAACCCGGCCCAGCTCTACGACCCTGCCAGCCAGGACTCTCTACATGAGGACTCTGTCAGGGGCCTTGTCAAACTCAGCTCTGTCTGAGACTCTCCCCCTGGCTTTTTGGAATCACTACTCAGACTCTGTCAGCGTGCCAAATATTCAATATGTAGCACTACttttaaaaagtagtgcactatatagggaatagcgtgccatttagGACGCTACCCCAGCCCCCCCGCTCCACACTGCCGGCTCAGTACCAAAGCCATAATTCCTGTTCCCCTAACATTCCatcccagccctccctccctccttcccatccAGATTTGTGCCCCCCACCTGTTGAGATAAGCTATTCTAGTGCCAAACAAACAGAGCCTCAGTCTCCACTGCACTTGACCGGGACCAAAATCAAGCTTCTGAATCCCCCTTCCTCTTCACAGTAGTATACCTAGTGCCCTACCAGGAGTCTACCAGGCCTCGATACAGGTCCAGGCTTCTGCCCAAGGCTCACGACTTGTGCTCTTTTGGGGGAAACCATCTACCTGGACCAGGCGGTCATTGTCCGGAAATGAAACTGACTCGCTCTCCTCTCGTCAGCCAAACCGACGTTCCAAGGCAGTTGCCATTTTGGTTTGCTGACATCCAAGGACACGCACAGCAGGACAAGGTCTGTTGATTAGCTGGAAAGACATGAATCAGGTCtaaatataggacttgtttataGTTTGATACGTGTCATGTGTCCCGAGTCAAGTGACACTCTTTTATACAATAGTAATGGAAACAGCCAAGCAGTGTTGGCCCTGAACACAGAAgatgtcacttcctgtttcaGATTGTGTCAACACTGTATGTGTTGATTGGTAGTGTTCATCAGTCCGTTCCGGTGTCGGTGTGACGCTAGCTGCATTACCTTTTTGTTTCGTTCAAATGTGATGCCAAAACATCatgcctgcatcccaaatagcaccctctctatttagtgcactactttttaccagggccaaAAGGACATtggaaaaagtagtgcactatatagggaatagggttccatttgggacagagatAATAAGTAATGTGATGATTGTACCAAGAAATTCTCATttacttatatatatttttttttctctcccctttttctccccaatttcatggtgtccaattttttttttttttttagtagctactatcttgtctcatcgctacaactcccgtacg
>XM_036984840.1
ATGCATCTCGGACTTGATGAGCCGGCGCGAGAATGTCAGTATAATCCGATCTGCACGCGCAACTCATCGTCTATGGAGACCTCGGGGCACAAAAAGAAGAGGACTCCCCGCAGGAAGTGGCAGATCTTCCCTGGCCGAAATAGATTCTACTGTAATGGAAGGGTCATGATGGCGAGACAGACTGGGGTCTTCTACCTAACCCTGATCCTCATCATGGTCACCAGCGGGCTTTTCTTCGCATTCGACTGCCCGTTCCTGGCGTCCAACCTGACCCCGGCCATCCCGGTGATCGGAGGGGTGCTGTTTGTCTTTGTTCTGGGGATGCTGTTCAGAGCCAGCTTCAGTGACCCGGGAGTCCTGCCCCGTGCCACACCCGACGAGGCTGCCGACCTGGAGAGACAGATTGACGCCTCTAATGGCCCCAGTGGTCCAGGGTACAGGCCGCCCCCGAGGATCAGAGAAGTGGTCATCAACGGGCAGACGGTCAAGCTTAAGTACTGCTTCACCTGCAAGATCTTCAGGCCCCCACGGGCCTCGCACTGCAGCCTGTGTGACAACTGTGTAGagcGTTTTGACCACCACTGTCCCTGGGTGGGGAACTGTGTTGGGAAGAGGAACTACCGTTTCTTCTACCTCTtcatcctgtccctctccttcctcaccgTCTTCATCTTCGCCTTCGTTATTACACACGTCATCCTGAGATCCAACCGGACAGGCTTCCTCAGCGCACTCAAAGACAGCCCTGCCAGTGTGCTGGAGGTGCTGGTGTGTTTCTTCTCGGTGTGGTCCATTATGGGCCTGTCGGGCTTCCACACCTACCTCATCAGCTCCAATCAGACCACCAACGAGGacATTAAAGGCTCGTGGTCGACCAAACGGGCGAAGGACAACTACAACCCCTACAGCTACGGGAACATCCTGACCAACTGCTGTGCTGCCCTTTGTGGTCCTCTTCCACCCAGTCTTATTGACAGAAGAGGCTTCATCCAGCCAGACACACCCCAGCCTGTGTCACACTCCAACGGGAGCAGCATGTACAACTCCACCCAGCTTCAATCTCACATGGCTGCCGCTACCCCTCTGCTCCACAGCGACCCTGTCATGATGGGCGGAGAGGGACCCACTCTTCCTGGGAAGAGTTCCCTGGGGGGCCCCTGTGCCTCACTGACCCCCAGCCAGCCTTCCCTGCCCTCCTCCATGCCTGGCCTGGGCTGTGCGGGGGACATGCTGACCCTGAGGGACCCAGACACCCACTGCCACCACCATCACTTTGTCAGCCCTGAGGAGACGCCCTCGCCCGGCCCCATGCCTCTGACTCTGCCCTGCCCCGCCCACATGACCCACGGGGGACACATGAACCCGGCCCAGCTCTACGACCCTGCCAGCCAGGACTCTCTACATGAGGACTCTGTCAGGGGCCTTGTCAAACTCAGCTCTGTCTGA

Function

NR:

description
probable palmitoyltransferase ZDHHC14

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16675 ZDHHC9_14_18; palmitoyltransferase ZDHHC9/14/18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984837.1 False 2613 mRNA 0.53 9 14723772 14748492
XM_036984841.1 False 2552 mRNA 0.53 8 14723772 14748569
XM_036984840.1 True 1446 mRNA 0.59 9 14724894 14748492

Neighbor

gene id symbol gene type direction distance location
LOC110529446 LOC106571252 coding downstream 150188 14549681 ~ 14573584 (-)
LOC110529444 LOC106571255 coding downstream 252643 14396011 ~ 14471129 (-)
LOC110529441 LOC106571256 coding downstream 331114 14340500 ~ 14392658 (-)
LOC110529435 LOC106571224 coding downstream 1090916 13626761 ~ 13632856 (-)
LOC110529434 LOC106571223 coding downstream 1122211 13598376 ~ 13601561 (-)
LOC110529452 LOC106571249 coding upstream 7422 14755991 ~ 14850443 (-)
LOC110529455 LOC106571248 coding upstream 140228 14888797 ~ 14901607 (-)
LOC110529190 LOC106571247 coding upstream 160306 14908875 ~ 14965313 (-)
LOC110529456 LOC106571246 coding upstream 223045 14971614 ~ 14980854 (-)
LOC110529457 LOC106571244 coding upstream 235963 14984532 ~ 15020390 (-)
G676722 tieg3 non-coding downstream 27937 14693866 ~ 14695835 (-)
G676717 NA non-coding downstream 39687 14676954 ~ 14684085 (-)
G676705 NA non-coding downstream 87895 14633193 ~ 14635877 (-)
G676691 NA non-coding downstream 120990 14602515 ~ 14602782 (-)
G676649 NA non-coding downstream 190331 14533213 ~ 14533441 (-)
G676771 NA non-coding upstream 25457 14774026 ~ 14774552 (-)
G676822 NA non-coding upstream 135793 14884362 ~ 14887465 (-)
G677114 NA non-coding upstream 284691 15033260 ~ 15033545 (-)
si:ch73-111k22.3 NA non-coding upstream 285420 15033915 ~ 15039013 (-)
G677117 NA non-coding upstream 290634 15039203 ~ 15039434 (-)
G676635 LOC106571254 other downstream 207244 14508329 ~ 14516528 (-)
G676178 NA other downstream 435427 14287849 ~ 14288345 (-)
G676077 NA other downstream 516147 14206987 ~ 14207625 (-)
G675834 LOC106571238 other downstream 737664 13983626 ~ 13986108 (-)
G675415 NA other downstream 1237635 13485679 ~ 13486137 (-)
G679087 NA other upstream 1684052 16432621 ~ 16433014 (-)
G679210 LOC106571290 other upstream 1876521 16625090 ~ 16630259 (-)
G679471 NA other upstream 2364974 17113543 ~ 17114528 (-)
G681659 NA other upstream 4042661 18791230 ~ 18792137 (-)
G684844 NA other upstream 6730197 21478766 ~ 21479203 (-)

Expression


Co-expression Network