LOC110529454 (LOC106571249)


Basic Information

Item Value
gene id LOC110529454
gene name LOC106571249
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14749575 ~ 14758924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474385.2
AGGTGCAGCTTTCCTGACGACTGTCGCCTCTGCCGGGATGATTGCAGGATTTGGCTCAACGTTTGCAAGgatcagatggtgacaggggtctcagcagggtcagtCAACCAGGGAAGACTAGTGCGTGACGGCACTGAGggAACGATGGCCACCCCTGCAGTACCAGAGACAGGGGCGTTCCTGGCTCTCCGGGCCCAGGGCTGGGGCTCGCTCTACACCTGGTGTGGAGTGGACTTGCTCAGCAACGCAGTCTGGAAAGCCATGGGGTCCATAGTGTAACAGATCAGGCAGATGATGCAGTCCGTTTTCCCGGCTATTAAAAAAACCCGAAGGATCAGCCAACTCAAGAGGAATGGGACACCATGTTCCAGTCTAAAGAGGACTGAAGGTCGAGACTATATTCTCACCCTGGCTGAGAGCAGCATTAATAAGTCACTGCGGGACTTAACCACTACTGTGGGATGGGCAGTCAGTTGGTCACTGTGCTGAGAAGGAAATTAACTTGGCGTCCACAATGCGTGGTCCAGCCACTCTTCACTGATGCTCATCTGAGGCCTATGAAGAGAGCACCCCTTGCCTGAAGGAGGAATTATGAAACAAATTACTGTTGGACTGAGGCATCACGGTTAATTTAAACTCCCTTGGATAATCTTAATTTCTGATCAGAGGTTTACTATGTAAAACCACAGGAGCCCTGGACTGTCTTGTACTGTACAGTTAGCCTAAACACCAATCTGTTTGTGCTCGTTGTCAAGCCATATTGTTGCTATGACGAGTATCACGTAGTTTCCATAAGACCGGTACTAAGGCTAGTACAGTAGTCCTCGGCAGCGACTGCGTTCTCATTTGTGTAGTGCTTGAACAGATCTTGAATCTACTCACTGTGCTTTGTCATGAAGGCCACAAGATGGATTGTCTTAAATCTGTATATGATCGGATTTCTTTGtcaatcaaaatgtatttcacaCTATTTGTTCTGCGAAAGAGTAAAAAGCTAAATGTGTTTGCTATTCTGAAGACAGTGAAAGATGTGCAGCTGAATGTGAGGTGCCTGGTTTCTCTTCCACAGATTGAAACATCATTCAATGTAACACCTAAGCGTTTACCGTCAGCTATTCCCATAAAAGACGAGTATAAAAATGAGAACAAACCTGAACCATCTTAAACTGGGCCCGGCTAGCCATATAACAAGTATAAAAATGAGAACAAACCTGAACCATCTTAAACTGGGCCCGGCTAGCCATATAACAAGTATAAAAATGAGAACAAACCTGAACCCTTAAACTGGGCCCGGCTAGCCATATAACAAGTATAAAAATGAGAACAAACCTGAACCATCTTAAACTGGGCCCGGCTAGCCATATAACAAGTATAAAAATGAGAACAAACCTGAACCATCTTAAACTGGGCCCGGCTAGCCATATAACAAGTATAAAAATGAGAACAAACCTGAACCATCTTAAACTGGGCCCGGCTAGCCATATAACAAGTATAAAAATGAGAACAAACCTGAACCATCTTAAACTGGGCCCGGCTAGCCATATAACAAGTATAAAAATGAGAACAAACCTGAACCATCTTAAACTGGGCCCGGCTAGCCATATAACAAGGACTGTGTAAAAAGCTTGTGACAgctgtccctgatgttttcctACACATTTAGCCCACATAATCAAGTTGAAAGAGCATGTCATGCAAACGTTGATGCCACAGCTGTGGCATTTCTGTCATGCATAGAATTCCTTCTCTGTGCCAAACTACTACGGTACTCATCTTCAGTCTGATTGGTTGCAGTTATGAAATATAACATGCCATGTAAGCAAGAGCGAAGCGACTTTCAGTCACGCGTGCATACAACCACAGCCATACGAAAACACTTTGGCCATATTCTGCCGCAGGCCTCCTGTTCACAATGTCTGGACAGAAGAATCAAAAACACCTTCAGTGCTCAACCAAAATCCATGTACGTTTATTCTTAACATGTGGAACATAGAATAAAGATTTTATACTGAATAAACAATGTAAAGTTGATCAAATGAAAGGGGGAGAAGTACCCTATATGTagagtaaaaaacaacaacacttaaCTGTCAATCAGGCATGTTATACAACATTGTTATTCTGGAATACAGTTCTGCTCATCATGGTCTGCTAGCTGTCTGTACAATCTAAATACGCTCCTCTTTTCAGAACCAAAACTAGAGCGGTCTCATCCCTATATGTCCTTAGACCTGTCCCagtcagaatatatatatatattttttaaatacataaaaTGACTAACCTCATTTGAAGTGAGTAACTAAATATCCAGTATTCAAATGAGCAGTAATAATAATTCTAAAGGTCATTATAATTATCAACTACCATCACTTATCTATACCACATGTCTTGGCGAAgataccaaatagggctgtcaaTGTACATCTTCTATATACAAATGGGCTTATAGATAGAAAAGGAGATAAGGACTGATGAAGTACTGTGTTGCTATGGTTACCAGTAAGTCAGTTGAACAGGGTGTCTTGTTTCGTCCCTGTTATACTGGTATGGTAAAAATATTATGATGCAATACTTGTGGTCAGTTGCCTGTGGTTGAAAGTCATTCACATttgttaaacccccccccccccaacaagcCTACTAAATCCTATTGCACAATAGGGCACCCCCCCAGAACAGGatatatgatgtactgttatATATTCAGAGTAAAGTCAGTGGTTTTTTCTTTACCTTAATACACGATAAAGAGGTCTATCTACAACATGATTCACAATTTAAATAAGTCTGCTTCCCCCTGCAAAAAACACCAACAAAAAGATCCCATACAGACAAACAGCCACATACAAATAAAATGTAAGCACGAGACCCCAAAACTAAAGTACGTTACCTTTCATTGGGTGCCAACTTTGGTTAAAACAAAAACGAAGCgacaaataaaaatatacttttttaaaAATACCAAgtattaaatattttattaaaattaTTAAAAAATTCCAAATAAAAGGTTGTGATTTGGGCAGaggagctatatatatatatttatttgtaaaaaaaaggaaaaaaaaa
>TU770447
GGACAAATAAAATTACCACTGAAAATAAACACGATTTTGAATGTCACTGCAATTGTGACAGAAAACGATAAACTACAGCTAATGAAAGGTGCAGCTTTCCTGACGATTGCAGGATTTGGCTCAACGTTTGCAAGGTAGCAATGATTGATGTAGGCTAGCATTACATCTTGGCAATTTAACTTCAGATGCCTGTTAGCCCTGACCGATGACGGAGTGATATTATACTGGTCCACATAATCTGACTACTAACGTTGTCTAAAATGTATTGCATTTTTATGCATAGCCTCCCTGGATGTATGGCAATTTTATGAAGAAAAACAAATTGCTCGCGCTGCAGACGTATCTcggtc
>TU770444
ACCAAAATCCATGTACGTTTATTCTTAACATGTGGAACATAGAATAAAGATTTTATACTGAATAAACAATGTAAAGTTGATCAAATGAAAGGGGGAGAAGTACCCTATATGTagagtaaaaaacaacaacacttaaCTGTCAATCAGGCATGTTATACAACATTGTTATTCTGGAATACAGTTCTGCTCATCATGGTCTGCTAGCTGTCTGTACAATCTAAATACGCTCCTCTTTTCAGAACCAAAACTAGAGCGGTCTCATCCCTATATGTCCTTAGACCTGTCCCagtcagaatatatatatatattttttaaatacataaaaTGACTAACCTCATTTGAAGTGAGTAACTAAATATCCAGTATTCAAATGAGCAGTAATAATAATTCTAAAGGTCATTATAATTATCAACTACCATCACTTATCTATACCACATGTCTTGGCGAAgataccaaatagggctgtcaaTGTACATCTTCTATATACAAATGGGCTTATAGATAGAAAAGGAGATAAGGACTGATGAAGTACTGTGTTGCTATGGTTACCAGTAAGTCAGTTGAACAGGGTGTCTTGTTTCGTCCCTGTTATACTGGTATGGTAAAAATATTATGATGCAATACTTGTGGTCAGTTGCCTGTGGTTGAAAGTCATTCACATttgttaACCCCCCCAGAACAGGatatatgatgtactgttatATATTCAGAGTAAAGTCAGTGGTTTTTTCTTTACCTTAATACACGATAAAGAGGTCTATCTACAACATGATTCACAATTTAAATAAGTCTGCTTCCCCCTGCAAAAAACACCAACAAAAAGATCCCATACAGACAAACAGCCACATACAAATAAAATGTAAGCACGAGACCCCAAAACTAAAGTACGTTACCTTTCATTGGGTGCCAACTTTGGTTAAAACAAAAACGAAGCgacaaataaaaatatacttttttaaaAATACCAAgtattaaatattttattaaaattaTTAAAAAATTCCAAATAAAAGGTTGTGATTTGGGCAGaggagctatatatatatatttatttgtaaaaaaaaggaaaaaaaaagtgtcttatttaaataaaaatataataccACCCACACCGATGTGTTTGTGTTCACTGTAGCCTGGTAGTCAGACcaaccccccctccctctgtttctttgCCTGTGGCTGTCACGAGGAGCGTCCAATCTTAAACAGTACTTCACACATGATGGCCGCCACGGCTGAACTCAGCACAGAGGACAGGGAGATATCCAGTAGCCTGCTCTCGTAGAGAACCAACTCTGTCCGGTGCTCCTTGGCCATGGCCAGCAGAGCCTTGGCGGCCCTGCACATCATGTTAACGCTGGGGGGTTGGGGGTGTGCTGCTGGGTGTAACAGGCTGTGAGGTCCCTGCTGGTGCTGGCACATGGCCACGCAGTCCTCCAGGAAGCCGATGAGTATCCCAACGCTACCCTTCTGCAGTGCGATGGCGCGCGCCGCGGTCGGGTCCCCCTGCGCCAGGTTAGAGAGCACAGCCACTGCCATCTCCCGGCACACCTGGGACTTCCGCTCACCCACGTGGTGCACCAGGGTGGCGTAGAGCTTCTCCTGGCGGCTGAACGGCGGCGTGGCCAGCAGGAGGTCCACGTTGTTATCCTGGATGCTCAGCTTGCACAGGCACTCCAGCACCAGTCTctggggggtgagggaggaggagcagCTCGCCGTGGTGAAGGGGTCCTGGGCCTCGGCAGAGGGACACACCATCCAGTGGAGGAGCCCGTCCAGGATGGGCAGACAAATGCTCTCTGGGTAGAGGGACAGGTCTAGTTGACCTGAGATGTTAGCCAGGGTGACCAGAGTGTTCTCCCTGAGGGCTGACAAACAGTCCCACCACCACTGGTCTTTACTGCAGGCCCggccctgctcctcctctctctggtagctgGGAGGCATCCTCCTCCTCTGGGGGTGCAGGTGGTGCAGCAGGACCAGCCGCCCCAGGATCAGCACCAGGCCAGGGTGGCAGGACATGTCGTTGTCATTCCCCGGGATGAAGGAGAGGCCGCGGACAATGTTGGAGATGCAAACGCAGCGGCGGGCCAGGGCGTCCTGCCAGGGTTCGGCCGTGGAGAGGGGCGCCTCGTCCCAGCAGCGAGGCTCGTCCTCCAGCAGGGTGAAGATAGGGCTCTGGGTCTGTGTCCCGGGAAGACCGTTCCTCTCTGACAGAGAGCCTGGCCAGGCACTCAGCATATCGTCCATAGTGGCTGTCTCAGTCATGCTCTTCTCTACaacagccttcctctcctcctctgtcgtTTCTGTCttatcctccctctctttcctctctgtagGCTTACTGTTGGTCTCCTCGCCACGTATCTCAAAGTGTGTCTGGATGTGGGCAGTGGAGTCCCCCCCTCCAGCCTTCCAGTGCAGCAGGCCAGAGGTGAACCCCCTGGACAGACTGAGCTCCTGGTCCTCCTCCACCTGGTCCTCCTCCACCTTCACAGGCAGCTTGTCGTACTTACTGGCCTGTTTGGGCCTGGGCTCTGGGGGCTGGGACTGCTCGGTGGCGGCCCTCTCCttttcctccccctctacctTCTCTTTCAAAGTCACCTCCACAGGCTCTTCCTTCTCCTCTGGGACCGCCTCCTCTGTGTTGCTGTTGGCTGTGGTCTTCTCTGGCCCGCTGTCCCTCTGCTCTTCGTCTAACTGGCTGTCAAGCTCTGCAACGGTAAGCCCCTCTTCCTGGTCTGTGATTGGTCCGAGCAGCATCTTCTGGCCCTCGGTGCCCACCTCGTACTCATCCAGGATCCCAAAGATGGAGATCAGACTCCGGCGGAAGTACTCCACTATCAGCTCCAGGAAGCCAGGC

Function

NR:

description
AT-rich interactive domain-containing protein 1B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474385.2 False 3075 mRNA 0.41 4 14749822 14757121
TU770447 False 350 lncRNA 0.40 3 14749575 14750106
TU770444 True 2878 TUCP 0.50 2 14755998 14758924

Neighbor

gene id symbol gene type direction distance location
LOC110529451 rir2 coding upstream 43002 14698367 ~ 14706820 (+)
LOC118965686 NA coding upstream 43657 14706026 ~ 14706165 (+)
LOC118965685 NA coding upstream 45163 14704521 ~ 14704659 (+)
LOC110529450 tieg3 coding upstream 53701 14691283 ~ 14696121 (+)
LOC110529449 LOC106571251 coding upstream 74783 14651265 ~ 14675039 (+)
LOC110529458 LOC106571242 coding downstream 281993 15039114 ~ 15105108 (+)
LOC110529460 NA coding downstream 361978 15119099 ~ 15124050 (+)
LOC110529462 LOC106571241 coding downstream 378091 15135212 ~ 15138185 (+)
LOC110529464 LOC106571299 coding downstream 501190 15258311 ~ 15260331 (+)
nkx2.1b nkx2.1b coding downstream 517507 15274628 ~ 15276931 (+)
G676400 LOC106571250 non-coding upstream 24631 14720738 ~ 14725191 (+)
LOC110529447 NA non-coding upstream 101681 14630190 ~ 14648178 (+)
G676356 NA non-coding upstream 136553 14612964 ~ 14613269 (+)
G676352 NA non-coding upstream 151802 14597599 ~ 14598020 (+)
G676269 LOC106571252 non-coding upstream 177864 14549681 ~ 14571958 (+)
G676431 NA non-coding downstream 16991 14774112 ~ 14774507 (+)
G676446 NA non-coding downstream 34119 14791240 ~ 14791804 (+)
G676447 NA non-coding downstream 36707 14793828 ~ 14794443 (+)
G676449 NA non-coding downstream 38434 14795555 ~ 14795814 (+)
G676450 NA non-coding downstream 38827 14795948 ~ 14796258 (+)
G676226 NA other upstream 386851 14360577 ~ 14362971 (+)
G675705 NA other upstream 893540 13855660 ~ 13856282 (+)
G675607 NA other upstream 974550 13774672 ~ 13775272 (+)
G675212 hsp90ab1 other upstream 1195759 13552200 ~ 13554063 (+)
G674669 LOC105902936 other upstream 1563325 13186107 ~ 13186497 (+)
G676919 NA other downstream 348482 15105603 ~ 15107143 (+)
G678417 LOC106571283 other downstream 1627681 16384802 ~ 16385945 (+)
LOC110529493 LOC106571284 other downstream 1630329 16387411 ~ 16390869 (+)
LOC110529505 LOC106571335 other downstream 2136038 16893102 ~ 16921697 (+)
LOC110529454 LOC106571249 other downstream 5892 14749575 ~ 14758924 (+)

Expression


Co-expression Network