LOC110529455 (LOC106571248)


Basic Information

Item Value
gene id LOC110529455
gene name LOC106571248
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14888797 ~ 14901607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611631.2
gagagagacagagagataggaagagagacagaggaagagagagagcgagaacgagagagagagagagagagggagagagagagagagagacagagaacagggagTCTAGCTCCATCACAGACGGACGGTGTGGTGTGATACTGGGATACTGTCAGAGGGCAGAGAGCTGGTTGCCTCAGGTTCCAGCTAACTGGGTTCTCTCGGAACAACAGCTGATGGGATGTGCTGTGCTGGACTGCATTCAACAACGGACATTCATCACGCCTGGGGCTGAAGTCCCCCCACTCTACCTGGGATGGGCTTGCCTTGTCCAAGTTTCAACTAGCATTCGCTGACGTGACATACTCACATAcacacgtgtgtttgtgtgtgcaaacacactaacacaatcTCTCAGACACAGGAGAAATGTGGTTCCATTGTGAGTTGTGCTGCTGGATGAACACTGGATGGATAGAATAGCGAAAACATTGAGAAGAGACTGACGCACCACGGCACACTGTCCGAGACACACAAAAGCCCACTGAAGCCTGCACTGAGGAATTATCTGCTGTCAGGACCTGAGGCTGCACGGGGGCGATAGGGAGAGACGGAGCCAGGGAGCCAGGCTCGGGCCACCACAGGGTGACGGTGCCGCTGTGCCGGAGAGGAGGGGACTCGCAACTCGGCGATGGCGTCCTCCACCATGCAGATCCTCGCCTTTGCCCTGGCGCTGCTGGGCGTCCTGGGCGCCACCGTGGCCACGCTGCTGCCCAACTGGAAGGTGAGTGCCGACGTGGGCTCCAACATCATGACTGCCATCTCCCAGATGCAGGGGCTGTGGATGGACTGCACCTGGTACAGCACCGGCGTGTTCAGCTGCACCTTGAAGTACTCTGTGCTGTCGCTGCCCGCCTACCTGCAGACCGCCCGGACGACAATGGTTCTGTCGTGCATGATGGGTTGCCTGGGCCTTTGTCTTGCCGCCCTAGGGCTGAAGTGCACCCGCTGGGGGGGCAGTCATCGGGCAAAGGGGCACGCGGCCATTGCCGCGGGGGGTTGCTTAATCCTGGCTGGCATTCTCTGCTTGGTGCCCGCTTCCTGGTTCACCAACGAGGTCATCACCACCTTCCTGGACTCCAACGTGCCCGAGAGCAGTAAATACGAGCCTGGGGGGGCCGTGTACGTGACCTTTGTCTCTGCCGGCTTCCTGCTTGCCAGTGGGGTCATCTTTTGTTTGTCGTGTCCCGGAAAAAGAGACTACACCTcgacctccacctctaccacctttcctgacaaactactgcagcagcaGATAAACCAAGAGCAACTACAGCGCGACCTGATACAGTGTGACCTGATGCAGCGCGATCAACAGCAACGGGAGCAGAAGGACTTTAAACAGCAGACGTCGCCCAATGAGCAGTCGAGCCAAGAGCAGCTACAGTGGGTTGACAAAGGGTCCCAGGGTAAGGTCCAAGCAGCTGACGACATCCAGCAGGAGAAGCCTCTACATGAAGACAAGGGAACGCAGCAGTTCTATTCTCCATCCAGAGTCCCTCCAAAAGACACCCGGGCTGGTTACAGCCTGCAGGACTATGTTTAATATGTTTTATCCCTAAACCCTACTCTTGTTAGTGGGGTGGGGGGAGAATCCTGAGGACATTCTACTGGCTGCCTTGTgaaggggagagagtggagaaagagggggaggaaggatgggaggaggagggagagagtggaggggagaaagagagggagggaggaggctaATGACGTTGACAGCCTTATCGCCACCTCTCATCTGTTCTCTCTCGCTACTGCGAGCACAAGCAGTAAAGGTATTCCCAAACTACTGGAGAAAGACAGCTTGTGGATCCAGATTCCTGGGGCAAATGCCTCCttgactgctgctgtggtgggcgGAAAGACAcaagggtagggtagagtagaggtgcCATAAAAATGCACAAACACAGCGCAAGTACTGTCAATCCTGTGACAAGTTCCTTTAAAAACTGATGCGGAGGCTTTTCCATACCAAAGGTTTCAATGAGAAAAAAAGTGCTGATGATAACTAGCTGTTAATAATAAGCCATCAGAACGATTGCATAGTAAGATAGCGTCGATATGTCTGGAAAAAGCCATTCTTTGCTATCTTGTGTCCTTTTAGAACCCATTTGCCTTGTGAGACAAAAAATAATCATCAATTATATTTTCCAAAGCTAAACGGACTGATTGATATTGAGTCTTCTTTGCATGCTAATTATCTGTAGCTTGTTAAATAATTCAGTGGAATGCAGAGTAGTTACTGAAACATAGTTACCAAAGCTTGTGCCTAAAAGAATGTGTAGAACTTCAACTGTCTGTAAAGGAGACTTAGAGAAGATTAACAAAGTGAAAAGGGAGTTCAGATTCCCACCAACACCATACACAAACATCCAGTCCATTTTTTTCCTGTGAGTTGTGGAGGGGAATAAGGTGCATGGCAGCGCAGGCTGTCAGAGATAATGATCCTCTTTGCTTTCCCATTATCCCCTCGCTACGGCTGGATGCACACTACTCATttactgcaccccccccccccccccccccgcacacgcacacacacacacacaccctcgtccttcctctccctctctagctgcGAGGGTAATAGGGTCTTGTACCCAATCATCTTTACggcgtgtgtccgtgtgtcatTGCTGCAGGAGGCACAGCGGTAGGAGTCTGTTCTGTGGCCAGAGGTTAGCTGTCACAAGCTGCTGTCCCCTCGTGTTGACGGAGGGTAATAGatgctacgtcccaaatggtaccttattccccatttaaggcacttcttttgaccaaggcccatacaTAGGGAAGGAAGGGTTCCACAAAAAGTGGTGATATTATTTGGCTCCCCAAGTATtctgagaaaaatatataaataatttcaTAGTTGGAAATAAAGAAGGTAAAATCATCAGAAAATCAGAAAATAATTCCCTGCATTCCCACACATACTGGGcacaatggaaaaacaatgtcatATTTTGGGTTTAGTTGTCATCTAAATGCAATATAGTATCATTGatgacacagtgcattcggaaagtattcagacccctttactttttccacattacagccttattctaaaatgtattcaattattttttccctcatcaatctacacacaataccccataatgacacatc

Function

NR:

description
claudin-20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611631.2 True 3183 mRNA 0.51 3 14888797 14901607

Neighbor

gene id symbol gene type direction distance location
LOC110529452 LOC106571249 coding downstream 38354 14755991 ~ 14850443 (-)
LOC110529453 LOC105017813 coding downstream 140228 14723772 ~ 14748569 (-)
LOC110529446 LOC106571252 coding downstream 315213 14549681 ~ 14573584 (-)
LOC110529444 LOC106571255 coding downstream 417668 14396011 ~ 14471129 (-)
LOC110529441 LOC106571256 coding downstream 496139 14340500 ~ 14392658 (-)
LOC110529190 LOC106571247 coding upstream 7268 14908875 ~ 14965313 (-)
LOC110529456 LOC106571246 coding upstream 70007 14971614 ~ 14980854 (-)
LOC110529457 LOC106571244 coding upstream 82925 14984532 ~ 15020390 (-)
si:ch73-111k22.3 NA coding upstream 132308 15033915 ~ 15039013 (-)
ndufaf7 ndufaf7 coding upstream 204347 15105954 ~ 15118998 (-)
G676822 NA non-coding downstream 1332 14884362 ~ 14887465 (-)
G676771 NA non-coding downstream 114245 14774026 ~ 14774552 (-)
G676696 NA non-coding downstream 141837 14615685 ~ 14746960 (-)
G676753 NA non-coding downstream 162862 14725676 ~ 14725935 (-)
G676722 tieg3 non-coding downstream 192962 14693866 ~ 14695835 (-)
G677114 NA non-coding upstream 131653 15033260 ~ 15033545 (-)
G677117 NA non-coding upstream 137596 15039203 ~ 15039434 (-)
LOC110529461 NA non-coding upstream 220357 15121941 ~ 15124458 (-)
LOC118965496 NA non-coding upstream 333241 15234799 ~ 15251367 (-)
G676635 LOC106571254 other downstream 372269 14508329 ~ 14516528 (-)
G676178 NA other downstream 600452 14287849 ~ 14288345 (-)
G676077 NA other downstream 681172 14206987 ~ 14207625 (-)
G675834 LOC106571238 other downstream 902689 13983626 ~ 13986108 (-)
G675415 NA other downstream 1402660 13485679 ~ 13486137 (-)
G679087 NA other upstream 1531014 16432621 ~ 16433014 (-)
G679210 LOC106571290 other upstream 1723483 16625090 ~ 16630259 (-)
G679471 NA other upstream 2211936 17113543 ~ 17114528 (-)
G681659 NA other upstream 3889623 18791230 ~ 18792137 (-)
G684844 NA other upstream 6577159 21478766 ~ 21479203 (-)

Expression


Co-expression Network