LOC110529456 (LOC106571246)


Basic Information

Item Value
gene id LOC110529456
gene name LOC106571246
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 14971614 ~ 14980854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611632.2
GTTAAGGAAGGGTATGCTCTTCATGTACATCCTCTTGTCATTCTGAGAGTCTGTATGAGCTGTTGTGCCTGATGGCTCCAGCATGCTGGTGACATGCTGCTGTAATAGGATATCTCTTCTCTCTGGATCAAACTCACCTGGTGCCGTACAGTACCTTCAGGACAGTGTTTGGAGGTCCCATAGGTTGGCTTACCATAGGTGATTCTGTGATGAGCCGTCGCAAGGTGTCTTTGAAGGAGCTGGGTCAGGTGGACTACCAGGGCTGGCTCTACAAGAAGAAGGAGAGCAAGGGCTTCCTGGGAACAAAATGGAAGAAGTACTGGTTTGTTCTGAAAAAGATCTCCATGTACTGGTACACTGGTCAAACGGCTGAGAAAGCAGAAGGATACATCCACCTTACAAACTTCACTGTCGACCAAGCAACAGAGTACAAGAAAAAGCATGCTATGAAGGCCAGCCATCCACAGGTTGTGACACTCTACTTTGCCGCCGAGAGTCTGAGAGAGATGAACAAGTGGCTGTCTAAACtgtcagcagcagcagcggcagcgACTGCTACACTGGACGAGTCGTCAGAGAGGAACACTGGGGAGTGCTACAGTGAGGAGAGTGACCAAGAGGAGGTTGAGTCACTGGAGACATCTGACGCTTTCTACTCTGAGCAGCTGACCATAGACTCTGTTAATgGAGATGTCCCCCCATCTTGCTCCACCTCGTCCCCATGTCACTCCACTGACCCCATGTCTGCCCCTGACAGCATTGAGACTTCAGAGAGCACGGAGTCCTGGCTGGATGTCCCTTCTCCAGAGAGGGCAGTGGGACAGGGCGCTCCCCTCCACCCCTTCAGactggaagaggaggatggaccGGGGGCTGAGGcccagggaggaaaggaggAGGGCACATCTGATGAAATGGAGGCACTGTACATCCATCTGAAGCATGCCAGACTATCTCCATCTGGAGAACTGAAGAGGGACTTCAGAGCGTCATTCATTCAACGCTGCAAAAATGACAGAGTCAATGAGAAGCTGCATCTGGTTAGGACCCTCAACAGCACTTTAAAGGCAAAAGAAGCCGACCTGTTGGCTATAGATCACGTGCTGGCAGATCCCCTTCTTACTGCACAGAGGTATCGTCAATGGAGGGTTGGGAACGTGGCGCTACTGCAGGATATCACTCATCTCAAAATGGGCCCACCAGGTGGCAGCAGAGAGCAGTCTTTCCCCCTCGAAGCTCCACGGACCCACTGCATCGCTGAAACCAGTGTGTGAccaacacagaacaatgacaggcATAGAGGCATCGGATACGATTCTCCACGGCCCCTATTTATAAAGCGGCTCAGTTTAGGAGTGTTGATCTAAGATCAGCCCCCACCCCTTAAGGCGAAACTGATTTTACATCAGCATTACTCTGAGATACTTTATGAGTAGGAGCCCAGGCATGcccataaacaaaaaaacaacagcaTTGTATTCCTTATTTTATCGAGAATATTCCTGAAAAAGTGCCGTGGATATTCCTATGCTTTCTTGTATGAATGGTTATCCATGTTTCTTACAGTCTTTTAAACACATGTTATTTTATGACGTGTGCAGTATAGTGCCACTTAGGGATGTTGGGAATAAGATGCTCCCTCTTTTAAAGGGAAACGTAATTTATAATGGGTTTGCTAAATCACAGGGTCATGTATCCTATCACTGGGTACGGATTGGGTGTTAATACTATTTTTCTAGTCACCATTGTTTGTAACACTGATATTAGGGAAGTTTGTTCTAGGTACACACCTTGTTCAATTAGTTTCACATCACAGAGTCTGGCCTAAGTAGAGTTTGTCTAAATAACTTTTTCTATCATAAGTAAATCAGCATTGACTAaattatgtttttatttgtttttaatattttaatattttatcaTTCAAACTTTGTAAATATTTTGTACATTGTGTATGGTTTTGTGGAACGAACTTGTACTGTTTACATGTTGTATGAATTTAACATGCATATGCTAAACAAATAAAGTCAGAGCTTAATGCCTAA

Function

NR:

description
interactor protein for cytohesin exchange factors 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611632.2 True 2045 mRNA 0.46 9 14971614 14980854

Neighbor

gene id symbol gene type direction distance location
LOC110529190 LOC106571247 coding downstream 6301 14908875 ~ 14965313 (-)
LOC110529455 LOC106571248 coding downstream 70007 14888797 ~ 14901607 (-)
LOC110529452 LOC106571249 coding downstream 121171 14755991 ~ 14850443 (-)
LOC110529453 LOC105017813 coding downstream 223045 14723772 ~ 14748569 (-)
LOC110529446 LOC106571252 coding downstream 398030 14549681 ~ 14573584 (-)
LOC110529457 LOC106571244 coding upstream 3678 14984532 ~ 15020390 (-)
si:ch73-111k22.3 NA coding upstream 53061 15033915 ~ 15039013 (-)
ndufaf7 ndufaf7 coding upstream 125100 15105954 ~ 15118998 (-)
LOC110529461 NA coding upstream 141087 15121941 ~ 15124458 (-)
LOC110529463 LOC106571240 coding upstream 244521 15225375 ~ 15230012 (-)
G676822 NA non-coding downstream 84149 14884362 ~ 14887465 (-)
G676771 NA non-coding downstream 197062 14774026 ~ 14774552 (-)
G676753 NA non-coding downstream 245679 14725676 ~ 14725935 (-)
G676722 tieg3 non-coding downstream 275779 14693866 ~ 14695835 (-)
G676717 NA non-coding downstream 287529 14676954 ~ 14684085 (-)
G677114 NA non-coding upstream 52406 15033260 ~ 15033545 (-)
G677117 NA non-coding upstream 58349 15039203 ~ 15039434 (-)
LOC118965496 NA non-coding upstream 253994 15234799 ~ 15251367 (-)
G676635 LOC106571254 other downstream 455086 14508329 ~ 14516528 (-)
G676178 NA other downstream 683269 14287849 ~ 14288345 (-)
G676077 NA other downstream 763989 14206987 ~ 14207625 (-)
G675834 LOC106571238 other downstream 985506 13983626 ~ 13986108 (-)
G675415 NA other downstream 1485477 13485679 ~ 13486137 (-)
G679087 NA other upstream 1451767 16432621 ~ 16433014 (-)
G679210 LOC106571290 other upstream 1644236 16625090 ~ 16630259 (-)
G679471 NA other upstream 2132689 17113543 ~ 17114528 (-)
G681659 NA other upstream 3810376 18791230 ~ 18792137 (-)
G684844 NA other upstream 6497912 21478766 ~ 21479203 (-)

Expression


Co-expression Network