XLOC_025735


Basic Information

Item Value
gene id XLOC_025735
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52224103 ~ 52264146 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052797
ACCTACAACAGCCTCCATCACAACAAACTCTCCATCAACTGCATTTCCAACATCAGAAATCCAACGTCAGAATCCAACATCAACTGTGCAAGAGAAGGCTTAcacgcatttaaccttcacccatgctgtcACAGGACGAATAAATGGATCCTCAAAACAATCATCTCCTGTTGGTACAAACACTCCAACAACTGAGTCTCAAAGAGCAGGACCTACAACAGCTTCTGCCACAACAGACACTCCATCAACTGAGTTTCCAGCATTAGCttcaaCACCACCTGCCAATGCAAGCTCTTCTCCAACTGAGCCTCAAACTATTGAACCTACATCCTCTTCTGCCAATATGAGTGCTTCTACAGCTGAGTCTCAAACAGCAGAACCTACaaCCTCCATCACAACAAACTCTCCATCAACTGCATTTCCAACATCAGAAATCCAACGTCAGAATCCAACATCAAtatttcctgcCAGTACAAGCTCTTCCACAACTGAGTTTCAAACAGCAGAACCTACAAGGTCTGCCACAACAAACTCTTTATCAACTTTGTCTCCAGCTccattaaCACCCCCTGCGAGTTCAAGCCTTTCTACAACGGAGTCTCAAACAGTTGAATCTACAACCTCCACCACAACAAACTCTCCATCAACTGTGTCTCCAACATCAGCTCCTTCAAATATTTTAGCACCCCCTGTCAGTACAATTTCTTCTACAACTGAGTCTCAAACAGCAGAACCTACA
>TCONS_00052378
gTGATTTTGTGCAACATTGTTTCTGTTTTAATACATGTAAATATTTCAGCACCACCTGCCAATGCAAGCTCTTCTCCAACTGAGCCTCAAACTATTGAACCTACATCCTCTTCTGCCAATATGAGTGCTTCTACAGCTGAGTCTCAAACAGCAGAACCTACaagtaatatacagtatatgtactgTTGACTGAATGCTGTTGTGGTGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052797 False 739 lncRNA 0.44 13 52224103 52264146
TCONS_00052378 True 209 lncRNA 0.40 2 52229866 52230153

Neighbor

gene id symbol gene type direction distance location
XLOC_025734 adgre14 coding upstream 57257 52145511 ~ 52166846 (+)
XLOC_025733 FUT9 coding upstream 113294 52092599 ~ 52110809 (+)
XLOC_025732 FUT9 coding upstream 134303 52078798 ~ 52089800 (+)
XLOC_025729 baiap2a coding upstream 276077 51684963 ~ 51948026 (+)
XLOC_025736 BX511132.2 coding downstream 11545 52275691 ~ 52294508 (+)
XLOC_025737 BX511132.1 coding downstream 103156 52367302 ~ 52379472 (+)
XLOC_025738 NA coding downstream 113432 52377578 ~ 52389039 (+)
XLOC_025739 NA coding downstream 126106 52390252 ~ 52392205 (+)
XLOC_025740 si:ch211-191c10.1 coding downstream 177956 52442102 ~ 52465596 (+)
XLOC_025429 BX649540.1 misc upstream 21975067 30248739 ~ 30249036 (+)
XLOC_025731 NA non-coding upstream 323204 51895324 ~ 51900899 (+)
XLOC_025730 NA non-coding upstream 465392 51758345 ~ 51758711 (+)
XLOC_025726 NA non-coding upstream 777107 51417422 ~ 51446996 (+)
XLOC_025725 NA non-coding upstream 1201046 51011289 ~ 51023057 (+)
XLOC_025724 NA non-coding upstream 1414910 50808637 ~ 50809193 (+)
XLOC_025746 BX511096.1 non-coding downstream 355912 52620058 ~ 52620175 (+)
XLOC_025750 NA non-coding downstream 542126 52806272 ~ 52883424 (+)

Expression


Co-expression Network