LOC110529462 (LOC106571241)


Basic Information

Item Value
gene id LOC110529462
gene name LOC106571241
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15135212 ~ 15138185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611642.2
TTGTGAAAATAACTGTTTAGGAAATGCCTTGTtcattttgacatttttttttaattacatgttTGATTAAAACTGTAAAATGTGAAACGCATATAAATTAAGTGAGTTGAAGTCCACACTCCTTGATAGAAACAATAATACTCGGTTGGTCAGAAGATGCTAAATCACATTAATAAGGCTAACACAGAGAAAGGGAATAACATTATAATGAAGCCCTTAATATAAAGCCCTCTTATAATTCTAAATTCCTTGTCGTTTTTTTCTGGAGGGAAAACAATCACATTTGATGTATTGGATCCTTTTAAATGGGTCTGGCCTTTTCAGCCAGCGCAGGTGTAAACTACAATATACAGTCAATGGAGGAGTCTCGTGTCTAGGTGTGAGCAGATTATTCAAATAGGGCACTGAAGGAGTGAGGATTGGAGGGTTGAGCGCTCAGCGAAACACCGTGCTGCTATACCACAGCAAGGCGAGGAGCCAACGTCATTAACTCCTGTCATCGTCAGTCGCTTTACAGTGTCTGAAGGCACTCAGGGTAGAAAGATACCCATGAACCAGTCACGAGGCAGCAAGCAGACTAAACGACCTGGGTAGCCTGTGGTCCCAAATCGGTTTTAGAGACGTTTTTCACTTCATCTTCTGCGGAGACTGAGGCTTTTGAGGGAAATTTGTTTTGGACTGTCCACAATGCTAAGCGCTGTTAAAATGGAAGGACACGAGCATTCAGACTGGAGTGCTTACTACGGAGAGCCCGAGTGCTACACCTCAGTTGGaaacatgacacaacacaccgGTCTGGGAATTAACTCGATGAACACCTATATGAGCATGCCTGGAATGACTTCAACCAGCAACATGACAGGCAACCCCATGAACATGTCATACGTCAACACGGGTGTGAACCACTCCATGGCCGGGATGTCACCGGGCTCCGGGGCCATGCACGGTATGGGAGCAGGGATGGCGGGCATGAGCGCGACGCTGAATCCGAATATGAGCCCCATAAGCACCCAGTCTCCATCAATGAATGCCCTGACCTCCTATAGCAATATGAGCGTTATGAGCCCCATGTATGGACAGTCCAACATAAGGTCAAGGGACCCCAAAACATACAGGAGAAGCTATACGCACGCCAAGCCCCCCTATTCCTACATTTCTCTCATCACCATGGCCTTACAGCAGTCTACCACAAAGATGCTGACATTGAATGAGCTGTACCAGTGGATCCAGGACCTCTTCCCCTTCTACAGACAGAACCAGCAGCGCTGGCAAAACTCTATCCGCCACTCTCTGTCCTTCAACGACTGCTTCCTCAAAGTGCCCAGGTCCCCGGATAAACCAGGCAAAGGATCTTTCTGGACTCTTCACCCGGACTCAGGGAATATGTTTGAGAACGGCTGCTATCTCCGAAGGCAAAAGCGGTTCAGATGCGAGAAAGACCTCGGCAGGGAAACCGGGAGGAAAAATTCAGAGGGAGGCCCTAACAGCAGCCCAGAGAGCTGTAACGGTAACGAATCACCCCACCATACCCTGTCCGTTAAAGACGTCAAACGGCCCGTATCTGACTCAAAACCTCGGCAGCAGGTAATGAGCCCCGCCGAGCACGCGCCCACTCCTGTCCCACAGACACACCATCTTCCGTCTCAACATCACTCGGTGCTCGTGTACGAAGCGCACCTGAAACCCGAGCACCACTATTCATTCAACCACCCTTTCTCCATCAACAATCTAATGTCGtcggagcagcagcagcatcaccaCAAAATGGACCTAAAATCGTATGAACAGATGATGCAGTATCACGGTTATGGTTCACCGATGAACGGGGCACTGTCCATGGGCCCAATGTCAACTAAAACCGGCTTAGATGTTGCTTCGACACCCACAGACACTTCTTACTACCAAGGTGTGTATTCGAGGCCAATCATGAACTCTTCTTGATTTTTATCTGCATTCAATTAACTTTTTCTAGCAATTACAATTTGTACATTTGTAAATTGGTAGTTTTTTGTTTTTATGCGTCACATTTTATGGACATTGGACATGGAAAGGACTGTCTCAGTGTCAAATTCGTTCAAATTAAGTTGATATGGGAAGAAATGATTTCATACAGCCATTTTTACATGAATTTGAAGGCGTAACTGTGCTACAAATTGTGAGACATTTTTTTGTGTATCCCTTATAACTTATACGTTGTTCATGTGTATTCATGTAGCTGCTTTAAATCTATATTAAAGTATTATTTGATGTTTTTTTATAT

Function

NR:

description
forkhead box protein A2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K08035 FOXA2, HNF3B; forkhead box protein A2, hepatocyte nuclear factor 3-beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611642.2 True 2260 mRNA 0.45 2 15135212 15138185
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110529460 NA coding upstream 11162 15119099 ~ 15124050 (+)
LOC110529458 LOC106571242 coding upstream 30104 15039114 ~ 15105108 (+)
LOC110529454 LOC106571249 coding upstream 378091 14749575 ~ 14758924 (+)
LOC110529451 rir2 coding upstream 428392 14698367 ~ 14706820 (+)
LOC110529464 LOC106571299 coding downstream 120126 15258311 ~ 15260331 (+)
nkx2.1b nkx2.1b coding downstream 136443 15274628 ~ 15276931 (+)
crnkl1 LOC106571265 coding downstream 338769 15476954 ~ 15483621 (+)
LOC110529475 LOC106571272 coding downstream 716437 15854622 ~ 15888522 (+)
LOC110529476 LOC106571274 coding downstream 754391 15892576 ~ 16023051 (+)
G676924 ndufaf7 non-coding upstream 19279 15111645 ~ 15115933 (+)
G676919 NA non-coding upstream 28069 15105603 ~ 15107143 (+)
G676966 NA non-coding upstream 75399 15059488 ~ 15059813 (+)
G676948 NA non-coding upstream 101931 15033058 ~ 15033281 (+)
G676940 NA non-coding upstream 112541 15022346 ~ 15022671 (+)
G677007 NA non-coding downstream 17040 15155225 ~ 15155520 (+)
G677008 NA non-coding downstream 18238 15156423 ~ 15156632 (+)
G677014 NA non-coding downstream 28224 15166409 ~ 15166776 (+)
G677079 LOC102780604 non-coding downstream 155528 15293713 ~ 15323741 (+)
G677277 NA non-coding downstream 188146 15326331 ~ 15326560 (+)
G676226 NA other upstream 772241 14360577 ~ 14362971 (+)
G675705 NA other upstream 1278930 13855660 ~ 13856282 (+)
G675607 NA other upstream 1359940 13774672 ~ 13775272 (+)
G678417 LOC106571283 other downstream 1246617 16384802 ~ 16385945 (+)
LOC110529493 LOC106571284 other downstream 1249265 16387411 ~ 16390869 (+)
LOC110529505 LOC106571335 other downstream 1754974 16893102 ~ 16921697 (+)
G681909 NA other downstream 4025751 19163936 ~ 19165640 (+)

Expression

LOC110529462(LOC106571241) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110529462(LOC106571241) Expression in each Bioproject

Bar chart with 17 bars.
LOC110529462(LOC106571241) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network