LOC110529463 (LOC106571240)


Basic Information

Item Value
gene id LOC110529463
gene name LOC106571240
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15225375 ~ 15230012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611644.2
TTGAGCACAGCCAACAATATTGACGTAATGGATGCGTCAAATTAATCTGCGCACACTTGAGCCTTCGGGATGGACACATTTCCCCTTATGGGACAAAGATCACTTCAGTCCCTTTGCCCAAACTCGCCGTTTTAGATCATCTTACCAGAAATGCAAGAGCAGAACTGAAGGAAAAACGCACAgaaaaaacattttcctcatctcATGTGCAGAAGGGTGAAGACAGCACTTTTCGACCATTGGCAACTGGTAGAGGAAAACATCTCAAACCAAAAGCAATGGATCAAACATATGGAGAAGTAAACCAGCTTGGCGGGGTATTTGTCAACGGGCGACCTCTTCCAAATTCGATCCGGATCAGAATCGTGGAATTAGCTCAACTTGGAATACGACCCTGTGACATCAGTAGACAGCTTCGAGTATCTCATGGCTGTGTGAGCAAGATACTAGCGAGATATAACGAGACGGGTTCGATATTGCCCGGTGCCATAGGAGGAAGTAAACCCCGGGTCACAACACCCAACGTGGTGAAAAGCATAAGGGATTACAAACAAGGAGACCCTGGAATTTTTGCTTGGGAGATCAGGGACAGGCTTCTTGCAGATGCAGTTTGTGATAAATATAACGTTCCTTCGGTTAGCTCCATAAGCCGCATTTtacgcaacaaaataggaaatcTTTCTCAGCCGGGCCAGTATGAGAACAGCAAGCCAACCCATCCTCAACTATCCTACAACCACATGTACCCGTACTCATACCCCAGTGCAATGTCACCCACTGGGACTAAAATTGGCAGCGGTCACGGTGTACCGATCACAGCGGGCCATGTCAGCCTCTCCCGTCATGGATGGCCTTCGGTGCACACAGTCAGCAACATTTTGGGCATTCGAGCCTTCATGGACCCCTCAGCCATTGCTGGAGCAGAGGGGTACCAATCAAAAATGGAGGAGTGGGCGAGCGTTAACAGAGCGACTTTTTCCTCTGCCCATGGCGTCAACGGAATAGAGAAATCATCCCTAGAGGCAGACATTAAGTATCATCAGTCTTCTTCAAACCTATCTAGTTATGTACCTGCTTGTGCCTACTCTCCCCCAAACCAATACGGGGTGTATGGTGGGCCAGCAGCTAACTACATGACAACAGGACACCACTGGCAGTCTCAGAACGCAAACCTGGCCCACCCCAACAGCGGAGCAACCATGCAAGGTGGAGACTTCCACACGGCAATGTCTTTCAAACACTCATCGCGAGAAGGAGACAGAAAACCTCACAGTCCCTTGATCAAGCACCAGCACGAGGCGTTGAACGTACACGGACTCTCCCTCCCGACCTCAGCTTAATGACCCAACGAACCCAACGGACCGTCAAACTCTCTTCAAATAGGCAATGTACAGAAAATGCATAAAATTATGGGCGAATTATCAATAATTCCACCAGTAAGTGAGGAACATACATTTCAAACGTCATTCAGTGTAATTGCATTGCAGTTCAATACAATTGTAAAATCATcgaatgtagacattaatgttGTTATAGTCTTGTTCACCTGCATTAATGCAGTGGTGTTGGTTAGGACTTCATTATTATATATTTTGCATTTCACTCATCCAAAACTCATCCCAAATCGAAATTGCGTAAAACTAATTATGTAACTTCCCTGAGGTCACATTGTTTCCACGACGGATATGGCTAATAGGCGTGCATGCTGTGTGTGTTCAAACAAACATTTGTTATTATGGACTGAAAAGGAAAGTTCAAAATGTGAACAATATCATGTatttgtaattttgtaaatgacatccgCAAAAACTGTattatgtatattttttataACTGTGCTTAATAAAGGCATGCTAAACGGGAAA

Function

NR:

description
paired box protein Pax-1-like

GO: NA

KEGG:

id description
K09382 PAX1_9; paired box protein 1/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611644.2 True 1865 mRNA 0.45 5 15225375 15230012

Neighbor

gene id symbol gene type direction distance location
LOC110529461 NA coding downstream 100917 15121941 ~ 15124458 (-)
ndufaf7 ndufaf7 coding downstream 106377 15105954 ~ 15118998 (-)
si:ch73-111k22.3 NA coding downstream 186362 15033915 ~ 15039013 (-)
LOC110529457 LOC106571244 coding downstream 204985 14984532 ~ 15020390 (-)
LOC110529456 LOC106571246 coding downstream 244521 14971614 ~ 14980854 (-)
LOC118965496 NA coding upstream 4787 15234799 ~ 15251367 (-)
LOC110529465 LOC106571262 coding upstream 47748 15277760 ~ 15323996 (-)
LOC110529466 insm1 coding upstream 214492 15444504 ~ 15447233 (-)
cfap61 cfap61 coding upstream 217372 15447384 ~ 15476927 (-)
naa20 LOC106571266 coding upstream 253674 15483686 ~ 15486258 (-)
G677117 NA non-coding downstream 185941 15039203 ~ 15039434 (-)
G677114 NA non-coding downstream 191830 15033260 ~ 15033545 (-)
G676822 NA non-coding downstream 337910 14884362 ~ 14887465 (-)
G677322 NA non-coding upstream 139462 15369474 ~ 15369762 (-)
G677471 NA non-coding upstream 257615 15487627 ~ 15487900 (-)
G677473 NA non-coding upstream 258811 15488823 ~ 15489091 (-)
G677481 NA non-coding upstream 264123 15494135 ~ 15494411 (-)
G676635 LOC106571254 other downstream 708847 14508329 ~ 14516528 (-)
G676178 NA other downstream 937030 14287849 ~ 14288345 (-)
G676077 NA other downstream 1017750 14206987 ~ 14207625 (-)
G675834 LOC106571238 other downstream 1239267 13983626 ~ 13986108 (-)
G675415 NA other downstream 1739238 13485679 ~ 13486137 (-)
G679087 NA other upstream 1202609 16432621 ~ 16433014 (-)
G679210 LOC106571290 other upstream 1395078 16625090 ~ 16630259 (-)
G679471 NA other upstream 1883531 17113543 ~ 17114528 (-)
G681659 NA other upstream 3561218 18791230 ~ 18792137 (-)
G684844 NA other upstream 6248754 21478766 ~ 21479203 (-)

Expression


Co-expression Network