LOC110529472 (LOC106571270)


Basic Information

Item Value
gene id LOC110529472
gene name LOC106571270
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15797446 ~ 15801678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611654.2
GGTTAAAAGAAAACCAAAAAAACTTCCTGACTTGGCTGTTCGTAACGCTGCGGTAGCTATATTTCATTAAAATGAGTTATCTTGCGAAATAACCTATAGAAAGCGACCACAGTTATACCTTATGTATCAGAGCATTATCATACTTGTCTCAGCTAAATTGTTAGCTTCTTCAGCGAGTCTCGCTATAATAGCTGCTACTGGTTGTTTTATTTTAGAACAGAACCGTTCTGAGTGAAGCCATGATGGCGTCGAGCTACAACGCGAAGGAAGACGGTCACGTCACCGTACCTGGTGGTGGGACCATCCAGAATAAAAAGCCCGATAACACAGCTTTTAAACAACAACGATTACCTGCTTGGCAACCCATCCTGACAGCTGGCACAGTTCTTCCAGCTTTCTTCGTTATCGGGCTTATCTTCATCCCCATTGGTATCGGCCTCTACGTCACGTCCAACAACATCAAGGAGTTCGAGATTGATTATACTGGGACTGACATGTCCAGCCCATGCTTCAACTGCTCCCAGAGCTTTAGTTGGAACAGCACAAGACCATGTACCTGTGCACTGCCCTTCTCTCTGGAACAGCCCTTTGAAAGCAACGTATTCATGTATTATGGCCTGTCCAACTTCTACCAAAATCACAGGCGCTATGTCAAGTCCAGGGATGACAGTCAACTGAATGGTGACACCACCTCTCTAATGAACCCCAGTAAAGAGTGTGAGCCCTATGCTCGCAATGAAAAAATGCCAATTGCTCCCTGTGGTGCAATCGCCAACAGCATGTTTAATGACACTTTGGATCTGTATTACATTGACCCTAATGGCACAAGAATCCAAATTCCTCTGATGAAGAAGGGGATCGCTTGGTGGACAGATAAGCATGTGAAGTTCAGGAATCCTGGAGGCAACCCCAACCTCACAAGTGCTTTTCAAGGTACAACCAAGCCGATCAACTGGCGCAAGCCTGTCTATGAACTAGACACAGATGCTGAGAATAACGGCTTCATCAATGAGGACTTCATTGTGTGGATGCGTACAGCTGCCCTCCCCACTTTCCGTAAGCTGTACCGTATTATCCAAAAGAAGAACAACATGACGCCGACACTTCCCCGTGGCAACTACACCCTGGAAGTCACCTACAACTATCCTGTTCGTAGCTTTGAAGGCCGAAAGCGTGTGATCCTGAGCACCATCTCCTGGATGGGGGGCAAGAACCCTTTCCTGGGCATCGCTTACATCACTGTGGGCTCTGTCTGCTTCTTCCTGGGAGTGGTCCTCCTCATTATCCACCACAAATATGGCAGCCGCAACAACACCGCTGACATACCTAACTAAAGACATCTTGTATGTATGTTGCATGCTGGCTAGCAGAGGCATGGGCGTAACCAGTGGCTAATTACAAGCACTGGTGGTCTCTTGTGTCTGGCTTGTGTACTGTGTGTAAGAATGGCCTGCTTGTCAAAAGTGCTGTGCAAGTATTGGAAGCGCAAAGACGTCAGGGGAGAGTTCACTCATATTTATTTTTCATGGTCAGAAAGCTATGCAGTTAACGTAGGTTTTTCTGTCAAGATGTTGTATTGACAGTAAGTTGAAATGTAATGACGCTACATCAATGTGCAGATAGTACCGTTTTAATTCAgaaatatgtgtgtgtctgtcatagATGTTTATTAGTTCTATATGaataaattatttaaaataaTGTTTGAAGATGGTCAAGCGAATCGGAACAGTCCATTAGGCTAAATGTTGAATTGCTTTGAGTCAAGGCTGTTTATTCATACAAGTATGTTCTTGTTACATACATTACAGTAGTTTGAGGAACATATTTCTGGTCTGTTTACACTACAGATAGGTCTCTATAGATTGCACAAGGATGTGCACAGATTTTCAGGTCAAGCGTTATGGAAGGCTTGCAATGTTTTCAATGTACTTTAGAACTCATTTTCTCAGTGTATAAATAGTCGTTCTGTTCAGCTGTCTAAAATATGCAGAGTCAAGTTTAAGTAACATAACACAAATGAAAATAGTACATTTCAAGGTTTTCAGGGACCAAAGCTCcatgtagcctgggtgccagtctttCTGCATTCTTGCAAATTCATTATGTAAAACATGTTTAGCATTACAAATAAGTAGGCAAGAACACAGACATACATTGGACCAGTCTAGCATTCATTTTATTCTATGGAAAAACATCCTTATTTATTTTCTTACTAAGATTGTTGCAAATTGGTGAAATATGTTTTGCACGAGTTACCTGGAGATTATACGCCTGTTgcttgacaaataaaataatatctGGACAACTCATGTTGTTAACCAGAATTGTATTTGAAAA

Function

NR:

description
cell cycle control protein 50A-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611654.2 True 2340 mRNA 0.42 7 15797446 15801678

Neighbor

gene id symbol gene type direction distance location
LOC110529470 LOC106571269 coding downstream 12869 15682572 ~ 15784577 (-)
naa20 LOC106571266 coding downstream 311188 15483686 ~ 15486258 (-)
cfap61 cfap61 coding downstream 320519 15447384 ~ 15476927 (-)
LOC110529466 insm1 coding downstream 350213 15444504 ~ 15447233 (-)
LOC110529465 LOC106571262 coding downstream 473450 15277760 ~ 15323996 (-)
LOC110529474 LOC106571271 coding upstream 12072 15813750 ~ 15843613 (-)
LOC110529191 LOC106571273 coding upstream 219352 16021030 ~ 16059262 (-)
LOC110529477 LOC106571275 coding upstream 335220 16136898 ~ 16140453 (-)
LOC110529478 snx14 coding upstream 444720 16246398 ~ 16271056 (-)
LOC110529480 LOC106571276 coding upstream 469726 16271404 ~ 16281281 (-)
G678048 NA non-coding downstream 742 15796187 ~ 15796704 (-)
G678047 NA non-coding downstream 4986 15790800 ~ 15792460 (-)
G678027 NA non-coding downstream 60734 15736358 ~ 15736712 (-)
G677481 NA non-coding downstream 303035 15494135 ~ 15494411 (-)
G677473 NA non-coding downstream 308355 15488823 ~ 15489091 (-)
G678062 NA non-coding upstream 6910 15808588 ~ 15872006 (-)
G678112 LOC106571272 non-coding upstream 73407 15875085 ~ 15875617 (-)
G678103 LOC106571272 non-coding upstream 83976 15885654 ~ 15888221 (-)
G678178 LOC106571274 non-coding upstream 192839 15994517 ~ 16007964 (-)
G678289 NA non-coding upstream 341345 16143023 ~ 16143379 (-)
G676635 LOC106571254 other downstream 1280918 14508329 ~ 14516528 (-)
G676178 NA other downstream 1509101 14287849 ~ 14288345 (-)
G676077 NA other downstream 1589821 14206987 ~ 14207625 (-)
G675834 LOC106571238 other downstream 1811338 13983626 ~ 13986108 (-)
G675415 NA other downstream 2311309 13485679 ~ 13486137 (-)
G679087 NA other upstream 630943 16432621 ~ 16433014 (-)
G679210 LOC106571290 other upstream 823412 16625090 ~ 16630259 (-)
G679471 NA other upstream 1311865 17113543 ~ 17114528 (-)
G681659 NA other upstream 2989552 18791230 ~ 18792137 (-)
G684844 NA other upstream 5677088 21478766 ~ 21479203 (-)

Expression


Co-expression Network