LOC110529478 (snx14)


Basic Information

Item Value
gene id LOC110529478
gene name snx14
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16246398 ~ 16271056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611662.2
GTGGCGAGGATTAGAGCCGGAAGTGACGGATGTAGGATTAAAGAAACAGTCGATCTGTCAAGGAAATAAACAACGCTTTCTGGCATAGGAAATAACACCAGCTAGCTACAATTAAAATGAAGACATAGTTAGCTATACTTTCTTCTATCTGAAACTGACACAAAATTATAACATGGTTCGCTGTCTGAAGTAGAACTAGCTGCCTGGATTACTCATTTATCCCATTTGTAAAATGGAATGTATTCGAGTTTATCTGGAGAGCCTGAAGCAAGGACTGCAAATTGATGTCTTGAGGGAAGTTGGACGTCAATATCCTGTCTTTTGCTTTCTTCTGGTTTTCATGCTGTCATTAACTATACTTCTTAATAGGTATCTTCACATTCTGATGGTGTTTTGGTCCTTCCTGGCTGGAGTGATTACGTTCTATTGCTCCCTCGGTCCAGAATCACTCCTGCCCAACATCCTGTACACCATAAAGCCCAAGAACAAACAAGAGCAACAGGAGCTGTTTCCATTGGGACACAGCTGTGCAGTGTGTGGGAAAGTAAAGTGCAAACGTCACAGACCAACATTACTCCTAGAAAACTATCAGCCATGGTTGGACTTGAAAGTCTACTCCAAAGTGGATGCTTCCATGTCTGAGGTGCTCGAGTTGGTTCTAGAGAATTTTGTATATCCCTGGTACCGGAACATCACAGATGACGAGGCATGTGTAGATGAACTGAGAATGACCTTTCGGTTCTTTGCATCTGTGTTAGTTCGACGCGCTCAGAAGGTTGATGTCCCCTCAGTTATTTCTGGCAAAATGATGAAAGCAGCCATGAAGCACGTTGAAATAATTGCAAAGGCCAAACAAAAAGtgaagAACACTGAGGGATTGCAGCAGGCTGCTCTGGTTGAGTATGGCCCTGACTTACATTTTGCCCTGCATAGTCGCAAAGATGAGCTGCGTTATCTCAGGAAGGTGACAAAGATGCTATTTGCCTATCTCATGCCTCCCAAAGCCACTGACTGCAGATCTCTAGCTGTGCTGATGCAAGAGATCCTGGTAGGCTCTGTGTTCCTCCCCATCATGGACTTCATGGCTGATCCTGATACTGTGAACCACATGGTGCTAATATTTGTTGATGACACTCCATCTGAGCCGGCCATGGAGCCACCATCTAGCCTGGTTCCATTCCTGCAGAAATACGCTGACCCTCGTACCAAGAAGACATCTGTGCTGAAGCTGGAGCTGAAGGAGATTCGGGAGCAGCAGGACCTTCTGTTCCGCTTCATGAACTTCCTAAAGCAGGAGGGAGCCGTGCACGTGCTCCAGTTCTTACTCACCGTGGAGGAGTTCAATGATAAGATCCTGTGTCCAGAGCTGAGTGAAGCTGAGCTGCGGCGTCTGCATGGTGAGGTGCAGCATGTCTACGAGACCTACTGCTTGGAGGAGAGTATCGACAAGATCAGTTTTGACCGCTTCATCGTTGAGGAAATACGAAACATTGCAGAGGGGCCGTACGAGGGAGTGGTGAAGCTGCAGACTATGCGCTGCCTGTTTGAGGCCTACGAGCATGTCCTGTCCCTGCTGGAGAATGTCTTCACCCCCATGTTCTGCCACAGCGATGGGTATTTCAGATACCTGCTGATGGGGGCAGAGTCTCCAAAAAGGGACTCCAGAATGAACAGGAATAGTCTGAGTGTGGATGATATGAGGATCGTCTCAAAACGAGGGGAGACGTTTGGGATCAGCCGGATCGGCAGCAAAATCAAAGGCGTCTTCAAGAGCACCACCATGGAGGGGGCGATGCTGCCGTACTCCATGGTCGACGCTGAAGATGAAGCGGTTGAGGAAGCGACTATGGTGATGGAGGATGACTCCCCTGTGGAGGCAGCTAGTACTCCAGGAGTCCTGAGGAACTTGTCAGCCTGGAGCATCACCATCCCCTACATTGACTTCTACGATGACGAGGTGAAGAAGGAGAGGGTCCCCGTGTTCTGCATCGACGTGGAACGCAATGACATGAAAGAAGTGGGACATGAAACAGAGGCCTGGTCCATCTTCAGACGATACATGGAATTCTACGTTCTAGAAAATAAACTCACAGAGTTCCACGGCTCATTTGCAGATGCACAGCTCCCTTCGAAAAGAATTATAGGACCAAAGAACTATGAGTTCCTATCATCAAAGAGGGAAGAATTTGAGGAGTATTTGCAGAGACTGCTGCAGCACCCAGAGTTGAGTAACAGTCAGCTGTTGGCAGACTTCCTGTCACCTCACAGCATGGAGACTCAGTTCATGGACAAGATGATGCCTGATGTAAACCTGGGTAAAATATTCAGGTCTGTCCCTGGAAAAATTATAAAAGAGAAAGGACAGAACCTAGAGCCTTTCATCCAGTCCTTCTTCAACTCTTGTGAATCTCCCAAAGTCAAACCCAGCAGGCCTGAGCTGACCACCCTCAGCTCTACTGCTGAGTACAACAAGCTCTCCAATGACCTCTACAAAAACAATACTAATCTGTTTGAGACCCTGGAGACACATAACCGGAACTACTTTATGGAGATGATCTCGGTAGAAGGGATGTATGACTACATGATGTTTATGGGTCGAGTCGTGTTCCACATCCCAGACTGGTTGCATCACATCCTGTCAGGGGGGCGGATCTTGCTCAAGAACACATTCGAGGCCTACATGGATAGCTACATTCAACACAAACTAGAGATGATCTTGCAGGAGCACCGTGTGGTGTCTCTCGTCACCATGCTCagagATGCTGTGTTCTGCGAGAACAGTGAGGAACGCACCACAGGAGACAAGCAGAGAAGAGCCAAGAAGGCATTTGATGAGATGATGAATTATCTGCCAGACTTTATGGAAAAGTGCATTGGACAGGAGGCCAAGTACGAGGGCATCCGACTTCTCTTTGACGGCTTCCAGCAGCCACTTCTCAACAAGCAGATGACGTACGTTCTGATGGATATTGCTGTCGAAGAACTGTTTCCAGAACTCGGCAAGAAGGGACAAGGGGAGCCGTCGGCAGACAGTAACCAGTGAATTTAGAAAACAGCTTGCTTCCTTTTCCTGGAGCCAAAGTGCAATACAGCAAATTCCAATGTCTCTGTGAGCATATATCAACATTCCAATGTCTCTGTGAGCATATATCAACATTCCAATGTCTCTGTGAGCATATATCAACATTCCAATGTATAATAATGcattaataaaaatatatttatagatTTTA
>XM_036984876.1
GTGGCGAGGATTAGAGCCGGAAGTGACGGATGTAGGATTAAAGAAACAGTCGATCTGTCAAGGAAATAAACAACGCTTTCTGGCATAGGAAATAACACCAGCTAGCTACAATTAAAATGAAGACATAGTTAGCTATACTTTCTTCTATCTGAAACTGACACAAAATTATAACATGGTTCGCTGTCTGAAGTAGAACTAGCTGCCTGGATTACTCATTTATCCCATTTGTAAAATGGAATGTATTCGAGTTTATCTGGAGAGCCTGAAGCAAGGACTGCAAATTGATGTCTTGAGGGAAGTTGGACGTCAATATCCTGTCTTTTGCTTTCTTCTGGTTTTCATGCTGTCATTAACTATACTTCTTAATAGGTATCTTCACATTCTGATGGTGTTTTGGTCCTTCCTGGCTGGAGTGATTACGTTCTATTGCTCCCTCGGTCCAGAATCACTCCTGCCCAACATCCTGTACACCATAAAGCCCAAGAACAAACAAGAGCAACAGGAGCTGTTTCCATTGGGACACAGCTGTGCAGTGTGTGGGAAAGTAAAGTGCAAACGTCACAGACCAACATTACTCCTAGAAAACTATCAGCCATGGTTGGACTTGAAAGTCTACTCCAAAGTGGATGCTTCCATGTCTGAGGTGCTCGAGTTGGTTCTAGAGAATTTTGTATATCCCTGGTACCGGAACATCACAGATGACGAGGCATGTGTAGATGAACTGAGAATGACCTTTCGGTTCTTTGCATCTGTGTTAGTTCGACGCGCTCAGAAGGTTGATGTCCCCTCAGTTATTTCTGGCAAAATGATGAAAGCAGCCATGAAGCACGTTGAAATAATTGCAAAGGCCAAACAAAAAGtgaagAACACTGAGGGATTGCAGCAGGCTGCTCTGGTTGAGTATGGCCCTGACTTACATTTTGCCCTGCATAGTCGCAAAGATGAGCTGCGTTATCTCAGGAAGGTGACAAAGATGCTATTTGCCTATCTCATGCCTCCCAAAGCCACTGACTGCAGATCTCTAGCTGTGCTGATGCAAGAGATCCTGGTAGGCTCTGTGTTCCTCCCCATCATGGACTTCATGGCTGATCCTGATACTGTGAACCACATGGTGCTAATATTTGTTGATGACACTCCATCTGAGCCGGCCATGGAGCCACCATCTAGCCTGGTTCCATTCCTGCAGAAATACGCTGACCCTCGTACCAAGAAGACATCTGTGCTGAAGCTGGAGCTGAAGGAGATTCGGGAGCAGCAGGACCTTCTGTTCCGCTTCATGAACTTCCTAAAGCAGGAGGGAGCCGTGCACGTGCTCCAGTTCTTACTCACCGTGGAGGAGTTCAATGATAAGATCCTGTGTCCAGAGCTGAGTGAAGCTGAGCTGCGGCGTCTGCATGGTGAGGTGCAGCATGTCTACGAGACCTACTGCTTGGAGGAGAGTATCGACAAGATCAGTTTTGACCGCTTCATCGTTGAGGAAATACGAAACATTGCAGAGGGGCCGTACGAGGGAGTGGTGAAGCTGCAGACTATGCGCTGCCTGTTTGAGGCCTACGAGCATGTCCTGTCCCTGCTGGAGAATGTCTTCACCCCCATGTTCTGCCACAGCGATGGGTATTTCAGATACCTGCTGATGGGGGCAGAGTCTCCAAAAAGGGACTCCAGAATGAACAGGATCGTCTCAAAACGAGGGGAGACGTTTGGGATCAGCCGGATCGGCAGCAAAATCAAAGGCGTCTTCAAGAGCACCACCATGGAGGGGGCGATGCTGCCGTACTCCATGGTCGACGCTGAAGATGAAGCGGTTGAGGAAGCGACTATGGTGATGGAGGATGACTCCCCTGTGGAGGCAGCTAGTACTCCAGGAGTCCTGAGGAACTTGTCAGCCTGGAGCATCACCATCCCCTACATTGACTTCTACGATGACGAGGTGAAGAAGGAGAGGGTCCCCGTGTTCTGCATCGACGTGGAACGCAATGACATGAAAGAAGTGGGACATGAAACAGAGGCCTGGTCCATCTTCAGACGATACATGGAATTCTACGTTCTAGAAAATAAACTCACAGAGTTCCACGGCTCATTTGCAGATGCACAGCTCCCTTCGAAAAGAATTATAGGACCAAAGAACTATGAGTTCCTATCATCAAAGAGGGAAGAATTTGAGGAGTATTTGCAGAGACTGCTGCAGCACCCAGAGTTGAGTAACAGTCAGCTGTTGGCAGACTTCCTGTCACCTCACAGCATGGAGACTCAGTTCATGGACAAGATGATGCCTGATGTAAACCTGGGTAAAATATTCAGGTCTGTCCCTGGAAAAATTATAAAAGAGAAAGGACAGAACCTAGAGCCTTTCATCCAGTCCTTCTTCAACTCTTGTGAATCTCCCAAAGTCAAACCCAGCAGGCCTGAGCTGACCACCCTCAGCTCTACTGCTGAGTACAACAAGCTCTCCAATGACCTCTACAAAAACAATACTAATCTGTTTGAGACCCTGGAGACACATAACCGGAACTACTTTATGGAGATGATCTCGGTAGAAGGGATGTATGACTACATGATGTTTATGGGTCGAGTCGTGTTCCACATCCCAGACTGGTTGCATCACATCCTGTCAGGGGGGCGGATCTTGCTCAAGAACACATTCGAGGCCTACATGGATAGCTACATTCAACACAAACTAGAGATGATCTTGCAGGAGCACCGTGTGGTGTCTCTCGTCACCATGCTCagagATGCTGTGTTCTGCGAGAACAGTGAGGAACGCACCACAGGAGACAAGCAGAGAAGAGCCAAGAAGGCATTTGATGAGATGATGAATTATCTGCCAGACTTTATGGAAAAGTGCATTGGACAGGAGGCCAAGTACGAGGGCATCCGACTTCTCTTTGACGGCTTCCAGCAGCCACTTCTCAACAAGCAGATGACGTACGTTCTGATGGATATTGCTGTCGAAGAACTGTTTCCAGAACTCGGCAAGAAGGGACAAGGGGAGCCGTCGGCAGACAGTAACCAGTGAATTTAGAAAACAGCTTGCTTCCTTTTCCTGGAGCCAAAGTGCAATACAGCAAATTCCAATGTCTCTGTGAGCATATATCAACATTCCAATGTCTCTGTGAGCATATATCAACATTCCAATGTCTCTGTGAGCATATATCAACATTCCAATGTATAATAATGcattaataaaaatatatttatagatTTTA
>XR_005052790.1
CTAGTGGCGAGGATTAGAGCCGGAAGTGACGGATGTAGGATTAAAGAAACAGTCGATCTGTCAAGGAAATAAACAACGCTTTCTGGCATAGGAAATAACACCAGCTAGCTACAATTAAAATGAAGACATAGTTAGCTATACTTTCTTCTATCTGAAACTGACACAAAATTATAACATGGTTCGCTGTCTGAAGTAGAACTAGCTGCCTGGATTACTCATTTATCCCATTTGTAAAATGGAATGTATTCGAGTTTATCTGGAGAGCCTGAAGCAAGGACTGCAAATTGATGTCTTGAGGGAAGTTGGACGTCAATATCCTGTCTTTTGCTTTCTTCTGGTTTTCATGCTGTCATTAACTATACTTCTTAATAGGTATCTTCACATTCTGATGGTGTTTTGGTCCTTCCTGGCTGGAGTGATTACGTTCTATTGCTCCCTCGGTCCAGAATCACTCCTGCCCAACATCCTGTACACCATAAAGCCCAAGAACAAACAAGAGCAACAGGAGCTGTTTCCATTGGGACACAGCTGTGCAGTGTGTGGGAAAGTAAAGTGCAAACGTCACAGACCAACATTACTCCTAGAAAACTATCAGCCATGGTTGGACTTGAAAGTCTACTCCAAAGTGGATGCTTCCATGTCTGAGGTGCTCGAGTTGGTTCTAGAGAATTTTGTATATCCCTGGTACCGGAACATCACAGATGACGAGGCATGTGTAGATGAACTGAGAATGACCTTTCGGTTCTTTGCATCTGTGTTAGTTCGACGCGCTCAGAAGGTTGATGTCCCCTCAGTTATTTCTGGCAAAATGATGAAAGCAGCCATGAAGCACGTTGAAATAATTGCAAAGGCCAAACAAAAAGtgaagAACACTGAGGGATTGCAGCAGGCTGCTCTGGTTGAGTATGGCCCTGACTTACATTTTGCCCTGCATAGTCGCAAAGATGAGCTGCGTTATCTCAGGAAGGTGACAAAGATGCTATTTGCCTATCTCATGCCTCCCAAAGCCACTGACTGCAGATCTCTAGCTGTGCTGATGCAAGAGATCCTGGTAGGCTCTGTGTTCCTCCCCATCATGGACTTCATGGCTGATCCTGATACTGTGAACCACATGGTGCTAATATTTGTTGATGACACTCCATCTGAGCCGGCCATGGAGCCACCATCTAGCCTGGTTCCATTCCTGCAGAAATACGCTGACCCTCGTACCAAGAAGACATCTGTGCTGAAGCTGGAGCTGAAGGAGATTCGGGAGCAGCAGGACCTTCTGTTCCGCTTCATGAACTTCCTAAAGCAGGAGGGAGCCGTGCACGTGCTCCAGTTCTTACTCACCGTGGAGGAGTTCAATGATAAGATCCTGTGTCCAGAGCTGAGTGAAGCTGAGCTGCGGCGTCTGCATGGTGAGGTGCAGCATGTCTACGAGACCTACTGCTTGGAGGAGAGTATCGACAAGATCAGTTTTGACCGCTTCATCGTTGAGGAAATACGAAACATTGCAGAGGGGCCGTACGAGGGAGTGGTGAAGCTGCAGACTATGCGCTGCCTGTTTGAGGCCTACGAGCATGTCCTGTCCCTGCTGGAGAATGTCTTCACCCCCATGTTCTGCCACAGCGATGGGTATTTCAGATACCTGCTGATGGGGGCAGAGTCTCCAAAAAGGGACTCCAGAATGAACAGGAATAGTCTGAGTGTGGATGATATGAGGATCGTCTCAAAACGAGGGGAGACGTTTGGGATCAGCCGGATCGGCAGCAAAATCAAAGGCGTCTTCAAGAGCACCACCATGGAGGGGGCGATGCTGCCGTACTCCATGGTCGACGCTGAAGATGAAGCGGTTGAGGAAGCGACTATGGTGATGGAGGATGACTCCCCTGTGGAGGCAGCTAGTACTCCAGGAGTCCTGAGGAACTTGTCAGCCTGGAGCATCACCATCCCCTACATTGACTTCTACGATGACGAGGTGAAGAAGGAGAGGGTCCCCGTGTTCTGCATCGACGTGGAACGCAATGACATGAAAGAAGTGGGACATGAAACAGAGGCCTGGTCCATCTTCAGACGATACATGGAATTCTACGTTCTAGAAAATAAACTCACAGAGTTCCACGGCTCATTTGCAGATGCACAGCTCCCTTCGAAAAGAATTATAGGACCAAAGAACTATGAGTTCCTATCATCAAAGAGGGAAGAATTTGAGGAGTATTTGCAGAGACTGCTGCAGCACCCAGAGTTGAGTAACAGTCAGCTGTTGGCAGACTTCCTGTCACCTCACAGCATGGAGACTCAGTTCATGGACAAGATGATGCCTGATGTAAACCTGGGTAAAATATTCAGGTCTGTCCCTGGAAAAATTATAAAAGAGAAAGGACAGAACCTAGAGCCTTTCATCCAGTCCTTCTTCAACTCTTGTGAATCTCCCAAAGTCAAACCCAGCAGGCCTGAGCTGACCACCCTCAGCTCTACTGCTGAGTACAACAAGGTCGAGTCGTGTTCCACATCCCAGACTGGTTGCATCACATCCTGTCAGGGGGGCGGATCTTGCTCAAGAACACATTCGAGGCCTACATGGATAGCTACATTCAACACAAACTAGAGATGATCTTGCAGGAGCACCGTGTGGTGTCTCTCGTCACCATGCTCagagATGCTGTGTTCTGCGAGAACAGTGAGGAACGCACCACAGGAGACAAGCAGAGAAGAGCCAAGAAGGCATTTGATGAGATGATGAATTATCTGCCAGACTTTATGGAAAAGTGCATTGGACAGGAGGCCAAGTACGAGGGCATCCGACTTCTCTTTGACGGCTTCCAGCAGCCACTTCTCAACAAGCAGATGACGTACGTTCTGATGGATATTGCTGTCGAAGAACTGTTTCCAGAACTCGGCAAGAAGGGACAAGGGGAGCCGTCGGCAGACAGTAACCAGTGAATTTAGAAAACAGCTTGCTTCCTTTTCCTGGAGCCAAAGTGCAATACAGCAAATTCCAATGTCTCTGTGAGCATATATCAACATTCCAATGTCTCTGTGAGCATATATCAACATTCCAATGTCTCTGTGAGCATATATCAACATTCCAATGTATAATAATGcattaataaaaatatatttatagatTTTA

Function

symbol description
snx14 Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity. Involved in autophagosome maturation. Acts upstream of or within autophagy and cerebellar Purkinje cell layer development. Predicted to be located in late endosome and lysosome. Is expressed in central nervous system. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 20. Orthologous to human SNX14 (sorting nexin 14).

NR:

description
sorting nexin-14-like

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611662.2 False 3233 mRNA 0.47 30 16246398 16271053
XM_036984876.1 False 3206 mRNA 0.47 29 16246398 16271053
XR_005052790.1 True 3115 mRNA 0.47 29 16246398 16271056

Neighbor

gene id symbol gene type direction distance location
LOC110529477 LOC106571275 coding downstream 105945 16136898 ~ 16140453 (-)
LOC110529191 LOC106571273 coding downstream 187136 16021030 ~ 16059262 (-)
LOC110529474 LOC106571271 coding downstream 402785 15813750 ~ 15843613 (-)
LOC110529472 LOC106571270 coding downstream 444720 15797446 ~ 15801678 (-)
LOC110529470 LOC106571269 coding downstream 461821 15682572 ~ 15784577 (-)
LOC110529480 LOC106571276 coding upstream 348 16271404 ~ 16281281 (-)
LOC110529483 NA coding upstream 13500 16284556 ~ 16293266 (-)
LOC118965666 NA coding upstream 14526 16285582 ~ 16285653 (-)
LOC118965667 NA coding upstream 14773 16285829 ~ 16285900 (-)
LOC118965675 NA coding upstream 15021 16286077 ~ 16286148 (-)
G678317 NA non-coding downstream 85889 16160207 ~ 16160509 (-)
G678315 NA non-coding downstream 87997 16158170 ~ 16158401 (-)
G678313 NA non-coding downstream 88566 16157607 ~ 16157832 (-)
G678307 NA non-coding downstream 91495 16154476 ~ 16154903 (-)
G678300 NA non-coding downstream 95780 16150407 ~ 16150618 (-)
G679003 NA non-coding upstream 12656 16283712 ~ 16283918 (-)
G678959 NA non-coding upstream 14753 16285809 ~ 16288529 (-)
G679008 LOC100306849 non-coding upstream 27334 16298390 ~ 16299479 (-)
G679027 NA non-coding upstream 111818 16382874 ~ 16383170 (-)
G676635 LOC106571254 other downstream 1729870 14508329 ~ 14516528 (-)
G676178 NA other downstream 1958053 14287849 ~ 14288345 (-)
G676077 NA other downstream 2038773 14206987 ~ 14207625 (-)
G675834 LOC106571238 other downstream 2260290 13983626 ~ 13986108 (-)
G675415 NA other downstream 2760261 13485679 ~ 13486137 (-)
G679087 NA other upstream 161565 16432621 ~ 16433014 (-)
G679210 LOC106571290 other upstream 354034 16625090 ~ 16630259 (-)
G679471 NA other upstream 842487 17113543 ~ 17114528 (-)
G681659 NA other upstream 2520174 18791230 ~ 18792137 (-)
G684844 NA other upstream 5207710 21478766 ~ 21479203 (-)

Expression


Co-expression Network