XLOC_025738


Basic Information

Item Value
gene id XLOC_025738
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52377578 ~ 52389039 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052798
CATAATGGTTTGCTGATAGGTAactgttttttttttcttgtgccaCATTTTGTAGTTTGTGAAAGTGCACTTGGAAGTATACTCTCAGTAAACTACTTTATTCATAACTTTTTTGCTACctgtaaatattttctttaagtGAACTTAACATTCTTGTAGTTAACATTTTAGGGGTGCAAGCACCAAAGTTGCATGACTACTGTATTGGTTCAGATTTTTTGTTGTCATTATTTGCACAGCAATTTCATTGATAATtgagtgaaaataaaatattaatcccACACTGACAATTGTTGTTAAGGccaaatgtttaacatttaattttcattttgcaAGATTTTAATATCAGTTTGATTGGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052798 True 360 lncRNA 0.30 2 52377578 52389039

Neighbor

gene id symbol gene type direction distance location
XLOC_025736 BX511132.2 coding upstream 83070 52275691 ~ 52294508 (+)
XLOC_025735 NA coding upstream 113432 52224103 ~ 52264146 (+)
XLOC_025734 adgre14 coding upstream 210732 52145511 ~ 52166846 (+)
XLOC_025733 FUT9 coding upstream 266769 52092599 ~ 52110809 (+)
XLOC_025732 FUT9 coding upstream 287778 52078798 ~ 52089800 (+)
XLOC_025739 NA coding downstream 1213 52390252 ~ 52392205 (+)
XLOC_025740 si:ch211-191c10.1 coding downstream 53063 52442102 ~ 52465596 (+)
XLOC_025741 adgre5a coding downstream 78840 52467879 ~ 52471761 (+)
XLOC_025742 si:ch211-191c10.3 coding downstream 84631 52473670 ~ 52474770 (+)
XLOC_025743 si:ch211-241f5.3 coding downstream 86019 52475058 ~ 52496765 (+)
XLOC_025429 BX649540.1 misc upstream 22128542 30248739 ~ 30249036 (+)
XLOC_025731 NA non-coding upstream 476679 51895324 ~ 51900899 (+)
XLOC_025730 NA non-coding upstream 618867 51758345 ~ 51758711 (+)
XLOC_025726 NA non-coding upstream 930582 51417422 ~ 51446996 (+)
XLOC_025725 NA non-coding upstream 1354521 51011289 ~ 51023057 (+)
XLOC_025746 BX511096.1 non-coding downstream 231019 52620058 ~ 52620175 (+)
XLOC_025750 NA non-coding downstream 417233 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 non-coding downstream 439873 52828912 ~ 52829006 (+)
XLOC_025761 NA non-coding downstream 1137926 53526965 ~ 53652401 (+)

Expression


Co-expression Network