XLOC_025739


Basic Information

Item Value
gene id XLOC_025739
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52390252 ~ 52392205 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052379
CttgtttgtttataatcagaGGGACGAGTCTTTATGGTTGGACCACATGTCACTTTAGGGCAAATCCCTCGACTACACACAACAAATTGCTCTATTGACATCGATCTCATTGGAATTGCCAAGAACAACAATGAAACAACTGCTGTGGTTTTTTTGGGCTACAACACAATGGAGAATCTACTAAAGGCCGACTTCTTCTATTCAACAAATGATACAGTTAACACCATGATGTCCTCTGTGATCTCAGTGACTCTTCCCAAAACGACCAACACTGCACTCAGCAAACCAGTCAACTTCACCTTCAGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052379 True 307 lncRNA 0.42 2 52390252 52392205

Neighbor

gene id symbol gene type direction distance location
XLOC_025738 NA coding upstream 1213 52377578 ~ 52389039 (+)
XLOC_025737 BX511132.1 coding upstream 10780 52367302 ~ 52379472 (+)
XLOC_025736 BX511132.2 coding upstream 95744 52275691 ~ 52294508 (+)
XLOC_025735 NA coding upstream 126106 52224103 ~ 52264146 (+)
XLOC_025734 adgre14 coding upstream 223406 52145511 ~ 52166846 (+)
XLOC_025740 si:ch211-191c10.1 coding downstream 49897 52442102 ~ 52465596 (+)
XLOC_025741 adgre5a coding downstream 75674 52467879 ~ 52471761 (+)
XLOC_025742 si:ch211-191c10.3 coding downstream 81465 52473670 ~ 52474770 (+)
XLOC_025743 si:ch211-241f5.3 coding downstream 82853 52475058 ~ 52496765 (+)
XLOC_025744 ptger1c coding downstream 136401 52528606 ~ 52539663 (+)
XLOC_025429 BX649540.1 misc upstream 22141216 30248739 ~ 30249036 (+)
XLOC_025731 NA non-coding upstream 489353 51895324 ~ 51900899 (+)
XLOC_025730 NA non-coding upstream 631541 51758345 ~ 51758711 (+)
XLOC_025746 BX511096.1 non-coding downstream 227853 52620058 ~ 52620175 (+)
XLOC_025750 NA non-coding downstream 414067 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 non-coding downstream 436707 52828912 ~ 52829006 (+)
XLOC_025761 NA non-coding downstream 1134760 53526965 ~ 53652401 (+)
XLOC_025764 CU633748.1 non-coding downstream 1675318 54067523 ~ 54067639 (+)

Expression


Co-expression Network