LOC110529488 (htr1e)


Basic Information

Item Value
gene id LOC110529488
gene name htr1e
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16355380 ~ 16356858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611723.2
ACTGACCTATAGTGTGGATCCTATTCCTGGGACAGAGTGTGCCCATCAGTGGGGGAGAGCTGGCCCTGTCTGGggaagatggagatggagagggaccTTGGGGACAGCTCCACAGGGCCCAATATCACCAACAGCACAGAAGCTCCAGACAGCACTCTCCCTGTGGTGGTGTTCACAGACAGGATGGTGGTGCTGGTGGTTATCCTGGCGCTACTAACCCTCCTCACTGTGCTCGCCAACAGTGCTGTCATCACAGCCATCTGCACCACCAAGAAGCTCCACCTTCCCGCCAACTACCTCATCTGCTCCCTGGCGTTCACCGACTTCCTGGTAGCTATCCTGGTCATGCCAATCAGCATCCTATACATTGCCACAGAGTACTGGTCGTTGGGCCAGGTGGTATGTGAGGCCTGGCTGAGTGTGGACATGACCTGCTGCACCTGCTCTATCCTGCACCTGTGTGTCATAGCGCTGGACCGCTACTGGGCTATCACCAAGGCCATCGAGTATGCCCGTAAGAGGTCGGCCCGCCGGGCAGCTGTCATGGTGGGCATCATCTGGGTCATCTCAGTCTTCATATCCATTCCACCCCTCTTCTGGAGACACAGGCCCGGTAGCCACGGCCCAAAACAGTGCATCATAGAGCATGACCACGTGGGCTACACTATTTACTCCACCTTCGGGGCCTTTTACATCCCCATGACCCTTATTCTCATCTTGTACTATAGGATTTATAATGCTGCTAAGACGCTCTATCAGAAACGGGGCTCATCGCGGCACTTCAGCAGCCGAAGCCAGACGAAGACTGATAGTCAGAACTCTCTGAACCACTGCCGTATGGCACACACCTTCTGCGTATCGGACCTATCCACTTCAGACCCCACTCTGGAGTTTGACAGGCTCAATGCCACCATCCGTATCCCCTCATTTGAGACAGATATGGACGGGGCAGATGAGAGGAGCCAGATCTGTACCTCTAGGGAGAGGAAGGCAGCACGTATCCTGGGCCTCATCCTCGGGGCTTTTATCCTCTGCTGGCTGCCTTTCTTTCTGAAGGAGCTCCTTGTGGGCCTACAGGTCATAACTGCCTCACCCCAGGTGTCAGAATTCCTAACCTGGCTGGGCTACATCAACTCACTTATTaatcctctactctacaccagcTTCAATGAGGATTTTAAGTTGGCCTTTAAGAAACTGCTCAGACGAAAGGAGCATGCATAGATTTGCAGGCCCAGGTTGAACGTACAGAATAGTCCCATCGGGGAAAGTATGAAGGAAATTTACATGCAGTGTGTCCATTGGCTATGTGATGTTGTGCttttcaaaataaaatgtattttttatttttttaaagtaatgttTCTTGCTCTTTGTGTAAACACAAACTTTGACCATGAACAATCATGGCTTATAAATGCacatacatacattttttatGGCTTTGTGAATGAATTACATTTTTACCAATGTGGGGTT

Function

symbol description
htr1e Enables G protein-coupled serotonin receptor activity and serotonin binding activity. Involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway. Is integral component of plasma membrane.

NR:

description
5-hydroxytryptamine receptor 1E-like

GO: NA

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611723.2 True 1479 mRNA 0.51 1 16355380 16356858

Neighbor

gene id symbol gene type direction distance location
bub1 LOC100306849 coding upstream 53794 16293321 ~ 16301586 (+)
LOC110529479 nt5e coding upstream 109242 16235767 ~ 16246138 (+)
LOC110529476 LOC106571274 coding upstream 332329 15892576 ~ 16023051 (+)
trnaa-ugc-22 NA coding upstream 391737 15963569 ~ 15963643 (+)
LOC110529475 LOC106571272 coding upstream 466858 15854622 ~ 15888522 (+)
znf292b LOC106571280 coding downstream 520 16357378 ~ 16383176 (+)
LOC110529493 LOC106571284 coding downstream 30553 16387411 ~ 16390869 (+)
LOC110529491 LOC106571281 coding downstream 34373 16391231 ~ 16406097 (+)
cfap206 cfap206 coding downstream 49377 16406235 ~ 16411381 (+)
LOC110529494 slc35a1 coding downstream 56917 16413775 ~ 16423971 (+)
G678326 NA non-coding upstream 74949 16221352 ~ 16280431 (+)
G678333 NA non-coding upstream 189254 16165906 ~ 16166126 (+)
G678332 NA non-coding upstream 189952 16165198 ~ 16165428 (+)
G678309 NA non-coding upstream 198707 16156304 ~ 16156673 (+)
G678305 NA non-coding upstream 200596 16154550 ~ 16154784 (+)
LOC118965606 NA non-coding downstream 71881 16428557 ~ 16432253 (+)
G678449 NA non-coding downstream 75472 16432330 ~ 16432671 (+)
G678451 NA non-coding downstream 77651 16434509 ~ 16434734 (+)
G678453 NA non-coding downstream 80101 16436959 ~ 16437366 (+)
G678455 NA non-coding downstream 81213 16438071 ~ 16438380 (+)
LOC110529464 LOC106571299 other upstream 1095390 15258311 ~ 15260331 (+)
G676919 NA other upstream 1248237 15105603 ~ 15107143 (+)
LOC110529454 LOC106571249 other upstream 1596456 14749575 ~ 14758924 (+)
G676226 NA other upstream 1992409 14360577 ~ 14362971 (+)
G675705 NA other upstream 2499098 13855660 ~ 13856282 (+)
G678417 LOC106571283 other downstream 27944 16384802 ~ 16385945 (+)
LOC110529505 LOC106571335 other downstream 536301 16893102 ~ 16921697 (+)
G681909 NA other downstream 2807078 19163936 ~ 19165640 (+)
G682611 NA other downstream 3371975 19728833 ~ 19729671 (+)

Expression


Co-expression Network