LOC110529495 (LOC106571286)


Basic Information

Item Value
gene id LOC110529495
gene name LOC106571286
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16439558 ~ 16445013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611732.2
TCGCAGCAGCCGCAACTTAGGTCCACTGCGGGAGGCGCACATGAGAGAGCAGATGCCATTCTGAGCGCCCATCAATAAACCGTATTAACCAATGAATAACTAGATCGTTAGacaaatatattttctatatAATTGTAAATGTTTTAACGTTCCTTGTTTTAATGATTACATTTATAGTTCTTTTGTCAGGTATTACGAGTCAAGGTTGGATTAATGGTTGGATACATTTTGGGTGGAGGGACCTGTGCGAGCAATGTGAAGGTTAACCAGAGATCATCTTAAACCCCAGTGTTCACATCTCAGGCCCAGTCATGAAGTCTGTGCTGGATGGTGTGGCAGACACAACCTTCCGGACTATAACCTCTGGACTGCTGTACCTTGGCTCCAATGATGCCAGCTATGATGACGCCACCATCAACACTGACTTCACTAAGGGTGGATTGTCCGTCCAGAAGCCTTTACCTGCTTTCCGCAGTAACTCTTTCCCAGACAAGGTGCCTGGAGATGAAGAACTCATCCTAAAAGGCATTCCATTCTTTCCCACCAATGCCACAGACCTGTTTGGCAACAGTAGCGGCTTTGGTGATGAGGGAACCGGAATCCAGTGTGCGGAGAACTTCGTGGACATGGAATGCTTCATGATCCTGACCCCTAGCCAGCAGTTGGCTGTGACGGTGATGTCCCTCACTCTGGGAACCTTCACTGTGCTTGAGAACCTTATCGTGCTGTGTGTGATCCTCCAATCCCGCACACTGCGCTGCCGCCCCTCCTACCACTTCATAGGAAGCCTGGCTGTAGCCGACCTGCTTGGCAGCGTCATCTTCGTCTACAGCTTCCTGGACTTCCATGTGTTCCACAGAAAGGACAGCCCCAATGTGTTCCTCTTCAAGTTAGGTGGGGTCATCGCTTCGTTCACAGCCTCTGTGGGAAGCCTGTTTCTCACTGCTATAGACCGCTACATCTCCATCCACAGACCCCTGGCCTACAGGCGCATCGTCACGCGGACCAAGGCTGTCATCGCCTTCTGCGTGATGTGGACTATCTCCATCGTCTTCGcagtgctccctctgctgggcTGGAACTGCAAGCAGCTCAACTCGGTCTGCTCAGACCTTTTCCCGCTAATCGATGAGAAGTATCTAATCTTCTGGATCGGGGTGACCAGCGTGCTGGTCCTCTTCATCATCTACGCTTACATGTACATCCTGTGGAAGGCCCACCACCACGCCGTGCGCATGCTGAGCCGCACCTCCCAGAAGAGCCTGGTGGTGTACTCAGCAGACGGAACGAAGGTGCAAACCATGCGCCCTGAGCAGACGCGCATGGATATCCGGCTCGCCAAGACCCTGGTCCTCATCCTGGTGGTGCTGGTCATCTGCTGGGGCCCTGTGCTGGCCATCATGGTCTACGACCTGTTCTGGAAGATGGATGATGATATTAAGACAGTGTTTGCTTTCGCCAGCATGCTCTGTCTGCTCAACTCAACAGTCAACCCAATAATTTACGCCCTGAGGAGCAAGGACCTGCGACACGCCTTCCTCAGCTCATGCCAGGCATGCCGGGGCAGTGCCCAGCAGCTGGACAATAGCCTGGAGTCTGACTGCCAGAGCAGGCACATCGCTGCCAACAGGGCTGCAGAGAGCTGTGTGAAGACCACTGTGAAAATAGCCAAAGTGACTATGTCTGTCTCCACTGAGACATCTGCAGAAGCTGTTTAGCTGGTCATCATCATGCCACAGCGATATTGTGCAACTCATCTGTTTCAGAGGAAACTTTCTCACAAGGTGGTGGACCTTCCACAGGATGTAATAAATTACACAAATAGCTAAACGCTTCAACGGTTCATTACTTCATTGTTTTATGTTTATGAGGTGTGctagtatagtgttatagtgCCTAAGTGCCAAATTGATTTGTAAAGGTGATGAAGAGAGTGGATGGTGGACCTATCCAAGACTGTCGTAAGTCTACTGCTGATCATAGACTTAATGATGATCAAACTGTAGATAGTACTGATGGTGAATTCATGAAGGCTTAGTATATTTTTGTACTGTGAATTCAGGTTCTGAAACAATGATATCTTAATTCATGGGATAAGGGGCTACTGAAGTTTTTGATTAGAAGTATGTGTTATCAAGATGTCAATATGTGTACGTACCATAAAGAAGACAAATCTTTGAGGCTTTGAGCAGCCAGACGAGGCATTGACTTTGTCCAGGCATCATGtacaaatatacagtatgttttgtGAATAGTTTACATTAATTTACATAAGGGTATAACtttaatatgtatttatttaagaCATGTACGATTCATAAAGCAACAGAGTTACTCATGTATTTTCTTTTTGTACCTGTCTGAGTTTATTATTTAATACAGAAATAACCGAGGCTTAGGATAAATAAAGCCTGACCTGACTTTGTGTAGACAGCTCCATTGATTGTTGGGCGTCATCTTTCATACAGAAGCTGGATGAATCTGAAAACCACATTGTTCAATTTAATGACATCAATTTGTCATTTGAAGCCATAATAAGCTCATCTGCAAGATGTGTTTAATAAGccaaaaatctacaatggaattcTCTGTAATGTAGGTACTGACAGACTGATACGTAACTCCTCCcaacaaaaaaatcacatttattcTGCCTTTCACTTCTTCCTCTCTACTCTTGGCTATAGTAGTATTTTTTCAATAAAAATGAATGTACACCAAACAATTGTACAGTGTTACATACAATGCAGTTCTGAAAAGTGGTGGCCACACTACCATAAAAATCATGCCATAGATTAAATTCAGATGATTTAAGTGGTTTTCATTCAATTCAGTACATTTGTGAATAACCTTACAACTTGATAAAAACAATGTCAACCTTCAATCTTATCAAATTGTTTCAGTGTTACCGTCAATAAATATAATTTAGCACTATTGATGCGGATTCTTTTGATATTTGAGGAGACAACAGCTACCCTAGAGCAGGCCTAGAGCTCAGCTTTTGGATTAACTAAAAAATAAGATAGCCTGTTAACTTTTTGGTTTTCTGAGTACATGTTTTATCAAAAGCAAGCCTTTCATTATAACTGACAACATGTTAGAATGGAAGTTATACTGTGTATGCATTGTATGGAAATGAGCCTTTTACAAGTGTTGATGAAAATGTAATTTTCAATTAGATTATATAGGAATTTTAATCTAGAACTATGACTCAGTTAGCACAATTGTTCTTTAGACATTTATCTTGGTGTTAAACTACTACTGACAGCTGTTTACCAGTGTGCTTTGCTGCCTCTCGTATTGTTGAGTGTTGAAGATCAAATGTCAGCTGTCAAGTGGCTTCTGTACAGTGGTGGCATCTGAGGATTGTCTGTGGAAAAAAATCATCTGCAGGATTCTTTTTCTTCCTTATTGCAATGTAATGTTTCCAAGCTTTTGAATAAAGTCACAGCTGGTTATGATG
>XM_021611733.2
cttcAGACATCGCAGCAGCCGCAACTTAGGTCCACTGCGGGAGGCGCACATGAGAGAGCAGATGCCATTCTGAGCGCCCATCAATAAACCTTCTTTTGTCAGGTATTACGAGTCAAGGTTGGATTAATGGTTGGATACATTTTGGGTGGAGGGACCTGTGCGAGCAATGTGAAGGTTAACCAGAGATCATCTTAAACCCCAGTGTTCACATCTCAGGCCCAGTCATGAAGTCTGTGCTGGATGGTGTGGCAGACACAACCTTCCGGACTATAACCTCTGGACTGCTGTACCTTGGCTCCAATGATGCCAGCTATGATGACGCCACCATCAACACTGACTTCACTAAGGGTGGATTGTCCGTCCAGAAGCCTTTACCTGCTTTCCGCAGTAACTCTTTCCCAGACAAGGTGCCTGGAGATGAAGAACTCATCCTAAAAGGCATTCCATTCTTTCCCACCAATGCCACAGACCTGTTTGGCAACAGTAGCGGCTTTGGTGATGAGGGAACCGGAATCCAGTGTGCGGAGAACTTCGTGGACATGGAATGCTTCATGATCCTGACCCCTAGCCAGCAGTTGGCTGTGACGGTGATGTCCCTCACTCTGGGAACCTTCACTGTGCTTGAGAACCTTATCGTGCTGTGTGTGATCCTCCAATCCCGCACACTGCGCTGCCGCCCCTCCTACCACTTCATAGGAAGCCTGGCTGTAGCCGACCTGCTTGGCAGCGTCATCTTCGTCTACAGCTTCCTGGACTTCCATGTGTTCCACAGAAAGGACAGCCCCAATGTGTTCCTCTTCAAGTTAGGTGGGGTCATCGCTTCGTTCACAGCCTCTGTGGGAAGCCTGTTTCTCACTGCTATAGACCGCTACATCTCCATCCACAGACCCCTGGCCTACAGGCGCATCGTCACGCGGACCAAGGCTGTCATCGCCTTCTGCGTGATGTGGACTATCTCCATCGTCTTCGcagtgctccctctgctgggcTGGAACTGCAAGCAGCTCAACTCGGTCTGCTCAGACCTTTTCCCGCTAATCGATGAGAAGTATCTAATCTTCTGGATCGGGGTGACCAGCGTGCTGGTCCTCTTCATCATCTACGCTTACATGTACATCCTGTGGAAGGCCCACCACCACGCCGTGCGCATGCTGAGCCGCACCTCCCAGAAGAGCCTGGTGGTGTACTCAGCAGACGGAACGAAGGTGCAAACCATGCGCCCTGAGCAGACGCGCATGGATATCCGGCTCGCCAAGACCCTGGTCCTCATCCTGGTGGTGCTGGTCATCTGCTGGGGCCCTGTGCTGGCCATCATGGTCTACGACCTGTTCTGGAAGATGGATGATGATATTAAGACAGTGTTTGCTTTCGCCAGCATGCTCTGTCTGCTCAACTCAACAGTCAACCCAATAATTTACGCCCTGAGGAGCAAGGACCTGCGACACGCCTTCCTCAGCTCATGCCAGGCATGCCGGGGCAGTGCCCAGCAGCTGGACAATAGCCTGGAGTCTGACTGCCAGAGCAGGCACATCGCTGCCAACAGGGCTGCAGAGAGCTGTGTGAAGACCACTGTGAAAATAGCCAAAGTGACTATGTCTGTCTCCACTGAGACATCTGCAGAAGCTGTTTAGCTGGTCATCATCATGCCACAGCGATATTGTGCAACTCATCTGTTTCAGAGGAAACTTTCTCACAAGGTGGTGGACCTTCCACAGGATGTAATAAATTACACAAATAGCTAAACGCTTCAACGGTTCATTACTTCATTGTTTTATGTTTATGAGGTGTGctagtatagtgttatagtgCCTAAGTGCCAAATTGATTTGTAAAGGTGATGAAGAGAGTGGATGGTGGACCTATCCAAGACTGTCGTAAGTCTACTGCTGATCATAGACTTAATGATGATCAAACTGTAGATAGTACTGATGGTGAATTCATGAAGGCTTAGTATATTTTTGTACTGTGAATTCAGGTTCTGAAACAATGATATCTTAATTCATGGGATAAGGGGCTACTGAAGTTTTTGATTAGAAGTATGTGTTATCAAGATGTCAATATGTGTACGTACCATAAAGAAGACAAATCTTTGAGGCTTTGAGCAGCCAGACGAGGCATTGACTTTGTCCAGGCATCATGtacaaatatacagtatgttttgtGAATAGTTTACATTAATTTACATAAGGGTATAACtttaatatgtatttatttaagaCATGTACGATTCATAAAGCAACAGAGTTACTCATGTATTTTCTTTTTGTACCTGTCTGAGTTTATTATTTAATACAGAAATAACCGAGGCTTAGGATAAATAAAGCCTGACCTGACTTTGTGTAGACAGCTCCATTGATTGTTGGGCGTCATCTTTCATACAGAAGCTGGATGAATCTGAAAACCACATTGTTCAATTTAATGACATCAATTTGTCATTTGAAGCCATAATAAGCTCATCTGCAAGATGTGTTTAATAAGccaaaaatctacaatggaattcTCTGTAATGTAGGTACTGACAGACTGATACGTAACTCCTCCcaacaaaaaaatcacatttattcTGCCTTTCACTTCTTCCTCTCTACTCTTGGCTATAGTAGTATTTTTTCAATAAAAATGAATGTACACCAAACAATTGTACAGTGTTACATACAATGCAGTTCTGAAAAGTGGTGGCCACACTACCATAAAAATCATGCCATAGATTAAATTCAGATGATTTAAGTGGTTTTCATTCAATTCAGTACATTTGTGAATAACCTTACAACTTGATAAAAACAATGTCAACCTTCAATCTTATCAAATTGTTTCAGTGTTACCGTCAATAAATATAATTTAGCACTATTGATGCGGATTCTTTTGATATTTGAGGAGACAACAGCTACCCTAGAGCAGGCCTAGAGCTCAGCTTTTGGATTAACTAAAAAATAAGATAGCCTGTTAACTTTTTGGTTTTCTGAGTACATGTTTTATCAAAAGCAAGCCTTTCATTATAACTGACAACATGTTAGAATGGAAGTTATACTGTGTATGCATTGTATGGAAATGAGCCTTTTACAAGTGTTGATGAAAATGTAATTTTCAATTAGATTATATAGGAATTTTAATCTAGAACTATGACTCAGTTAGCACAATTGTTCTTTAGACATTTATCTTGGTGTTAAACTACTACTGACAGCTGTTTACCAGTGTGCTTTGCTGCCTCTCGTATTGTTGAGTGTTGAAGATCAAATGTCAGCTGTCAAGTGGCTTCTGTACAGTGGTGGCATCTGAGGATTGTCTGTGGAAAAAAATCATCTGCAGGATTCTTTTTCTTCCTTATTGCAATGTAATGTTTCCAAGCTTTTGAATAAAGTCACAGCTGGTTATGATG

Function

NR:

description
cannabinoid receptor type 1A-like

GO:

id name namespace
GO:0038171 cannabinoid signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004949 cannabinoid receptor activity molecular_function

KEGG:

id description
K04277 CNR1; cannabinoid receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611732.2 False 3463 mRNA 0.43 2 16439558 16445004
XM_021611733.2 True 3376 mRNA 0.44 3 16439558 16445013

Neighbor

gene id symbol gene type direction distance location
LOC100499588 LOC100499588 coding downstream 13053 16424860 ~ 16426505 (-)
gjb7 LOC106571283 coding downstream 52913 16383314 ~ 16386645 (-)
LOC118965674 NA coding downstream 150926 16288561 ~ 16288632 (-)
LOC118965673 NA coding downstream 151173 16288314 ~ 16288385 (-)
LOC118965665 NA coding downstream 151420 16288067 ~ 16288138 (-)
LOC118965497 NA coding upstream 22406 16467419 ~ 16505761 (-)
LOC110529498 LOC106571289 coding upstream 194833 16639846 ~ 16674144 (-)
LOC110529499 LOC106571292 coding upstream 240748 16685761 ~ 16720691 (-)
LOC110529501 LOC106571293 coding upstream 276149 16721162 ~ 16758117 (-)
LOC110529503 lyrm2 coding upstream 381006 16825797 ~ 16830629 (-)
G679089 NA non-coding downstream 4259 16435100 ~ 16435299 (-)
G679081 NA non-coding downstream 27658 16411648 ~ 16411900 (-)
G679080 cfap206 non-coding downstream 27986 16410599 ~ 16411572 (-)
G679078 NA non-coding downstream 30978 16408297 ~ 16408580 (-)
G679076 cfap206 non-coding downstream 31728 16407616 ~ 16407830 (-)
G679102 NA non-coding upstream 13287 16458300 ~ 16458794 (-)
G679104 NA non-coding upstream 16471 16461484 ~ 16461865 (-)
G679105 NA non-coding upstream 16909 16461922 ~ 16462154 (-)
G679107 NA non-coding upstream 17815 16462828 ~ 16463052 (-)
G679087 NA other downstream 6544 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 1923030 14508329 ~ 14516528 (-)
G676178 NA other downstream 2151213 14287849 ~ 14288345 (-)
G676077 NA other downstream 2231933 14206987 ~ 14207625 (-)
G675834 LOC106571238 other downstream 2453450 13983626 ~ 13986108 (-)
G679210 LOC106571290 other upstream 180077 16625090 ~ 16630259 (-)
G679471 NA other upstream 668530 17113543 ~ 17114528 (-)
G681659 NA other upstream 2346217 18791230 ~ 18792137 (-)
G684844 NA other upstream 5033753 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 5475414 21920427 ~ 21926307 (-)

Expression


Co-expression Network