LOC118965497


Basic Information

Item Value
gene id LOC118965497
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16467419 ~ 16505761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052818.1
TATAGGAGGCTATAGATGTCATTCTATTCCCCAGACTTATTTTCATTCCTTGCTGTACAGTGTTACAGTATCTGTCCTGTTGCTGATGAAATCTCCTGTTGTGTTTTTTTCAGCTCCTGGAAAGCCGCTTCATGTCAGCCATGAAGTCAACGACCTTATCTTTCAGCCTTGCGGGTCCTCGAAGGAGCTGAAGCAGTACGACAACAAGATAATTGAGTGGTCCTTTAACAACGACACCTGGGTGTTCATGTGACACAGGGTGGACAAGAGCTTCCCCAACTCCTACAACACACTCTGTGTAACAGCATCCAGCATCCTGTCACAAAAGAAAACCTCTGAGTTTCTGGACCGCTGTGCCCTGGGGGCCCACAGACAGAACCGGAAACACCACCATGACCCAGACACAGAGCTCATGCCCCGTACTGCTCCAAAGACACCCAACTGGGCCATACCATACAGCGGAGGTGGGCCGGGCCAGTGTAGCAGTGTATCTATGTGGCTTGCAGAGCGAGGCCCTTCATGGCTACAGCCcgcccccttcctccccctcagACACAGACATTTGAAAAACCCCTCTTATCTGTGACCATTTGATTATCAGCCTCTTACAGGCCCTCTTAACTAAAACATATTGGATTGAATAACTCATAGATCCTGTTAGATATCCCCATGTAGTGCCTTATCTTTCATTTCAGTGGTTCTTATTAAAGAAAAAATACATAATGGtgaatttaatttatttattccCTTTTTTTAAAGGTCTCCTAACTAATCTATTGATCAACAACAGAGGAATTGGTGTTTTAACTACGGCAGCAACTGACTATGTTTTTCCTAGCTGTTTATTTGTATTTGGGATGGCGGTAATCAGATGGGAAACAACCACCTGACCCTTCCTTTCTATCTTTTCTCTCCCAGCAGTGAAGTGAAGGAATGCACTAGGGAGTATTTCAAAGGTATTGTTTAGTAGCAAGAGAGAGCTATTCCTCTGAGATATTCTTCTGACACACAGTGATATATCGGGTTGACAACATGAATAACCATGACAAGATGTCTCCACAGTATGTGTGCAACAAACACACTCTGCCTCCACGTGACGTCACATGACCATATCGTCAGACCCCAGAATAGACTCGGTAACCGCTTGGGAAATGTCATGATGGAAACATGCCTCTCCTTTGTTTTTTCTTCAATGTGTGTACAGAATAATAACATTTCAACACTTGCTTTATTTGAACAGATACCCCAATTAAGGACTGCCCTAGTTCATAACAGACTGGTTTACTCCTGCATTTGTTGTTTGATTGGATCCATTAAAACAATACATCATGTGAAAGGGAAGGTACAGTggtaagaaaaagtatgtgaaccatttggaatttctgcataaattggtaatcaaatttgatctgatcttcatctaagtcacaacgaTAGACAAATATAGtatgcttaaactaataacacacaaattattgtatttttcttgtctatattgaatacatagtTTAAACATTCATATTCAcacaaaaagtatgtgaacccctaggctaatgacttctccaaaagctaattggagtcaggagtcagctaacctggaggccaatcaatgagacaagattggagatgttggttagagattttgagtttgctattcacaagaagcattgcctgatatATCTCAGGAGACCTAAGatgaagaattgttgacttgcataaagctggaaagggaaacaaaagtatctctaaaagccttgatgttcttCAGTCCACAGAAAGACAAAtgtacgccttctggagtggtccagtcagagtcctgacctcaacccgattgagatgctgtggcataaCCTCAatagagcagttcacaccaga
>TU773535
ACAGTggtaagaaaaagtatgtgaaccatttggaatttctgcataaattggtaatcaaatttgatctgatcttcatctaagtcacaacgaTAGACAAATATAGtatgcttaaactaataacacacaaattattgtatttttcttgtctatattgaatacatagtTTAAACATTCATATTCAcacaaaaagtatgtgaacccctaggctaatgacttctccaaaagctaattggagtcaggagtcagctaacctggaggccaatcaatgagacaagattggagatgttggttagagattttgagtttgctattcacaagaagc
>TU773536
GATATTCTTCTGACACACAGTGATATATCGGGTTGACAACATGAATAACCATGACAAGATGTCTCCACAGTATGTGTGCAACAAACACACTCTGCCTCCACGTGACGTCACATGACCATATCGTCAGACCCCAGAATAGACTCGGTAACCGCTTGGGAAATGTCATGATGGAAACATGCCTCTCCTTTGTTTTTTCTTCAATGTGTGTACAGAATAATAACATTTCAACACTTGCTTTATTTGAACAGATACCCCAATTAAGGACTGCCCTAGTTCATAACAGACTGGTTTACTCCTGC

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0098501 polynucleotide dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052818.1 False 1875 mRNA 0.42 3 16467419 16505761
TU773535 False 322 lncRNA 0.33 1 16467628 16467949
TU773536 True 299 lncRNA 0.42 1 16468003 16468301

Neighbor

gene id symbol gene type direction distance location
LOC110529495 LOC106571286 coding downstream 22406 16439558 ~ 16445013 (-)
LOC100499588 LOC100499588 coding downstream 40914 16424860 ~ 16426505 (-)
gjb7 LOC106571283 coding downstream 80774 16383314 ~ 16386645 (-)
LOC118965674 NA coding downstream 178787 16288561 ~ 16288632 (-)
LOC118965673 NA coding downstream 179034 16288314 ~ 16288385 (-)
LOC110529498 LOC106571289 coding upstream 134085 16639846 ~ 16674144 (-)
LOC110529499 LOC106571292 coding upstream 180000 16685761 ~ 16720691 (-)
LOC110529501 LOC106571293 coding upstream 215401 16721162 ~ 16758117 (-)
LOC110529503 lyrm2 coding upstream 320258 16825797 ~ 16830629 (-)
LOC110529504 mdn1 coding upstream 324990 16830751 ~ 16893020 (-)
G679107 NA non-coding downstream 4367 16462828 ~ 16463052 (-)
G679105 NA non-coding downstream 5265 16461922 ~ 16462154 (-)
G679104 NA non-coding downstream 5554 16461484 ~ 16461865 (-)
G679102 NA non-coding downstream 8625 16458300 ~ 16458794 (-)
G679089 NA non-coding downstream 32120 16435100 ~ 16435299 (-)
G679332 NA non-coding upstream 313170 16818931 ~ 16821129 (-)
G679364 NA non-coding upstream 396492 16902253 ~ 16910145 (-)
LOC110529508 LOC106571332 non-coding upstream 420151 16925897 ~ 17037936 (-)
G679407 NA non-coding upstream 548215 17053976 ~ 17100186 (-)
G679087 NA other downstream 34405 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 1950891 14508329 ~ 14516528 (-)
G676178 NA other downstream 2179074 14287849 ~ 14288345 (-)
G676077 NA other downstream 2259794 14206987 ~ 14207625 (-)
G675834 LOC106571238 other downstream 2481311 13983626 ~ 13986108 (-)
G679210 LOC106571290 other upstream 119329 16625090 ~ 16630259 (-)
G679471 NA other upstream 607782 17113543 ~ 17114528 (-)
G681659 NA other upstream 2285469 18791230 ~ 18792137 (-)
G684844 NA other upstream 4973005 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 5414666 21920427 ~ 21926307 (-)

Expression


Co-expression Network