Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118965497 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 16467419 ~ 16505761 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0098501 | polynucleotide dephosphorylation | biological_process |
| GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005052818.1 | False | 1875 | mRNA | 0.42 | 3 | 16467419 | 16505761 |
| TU773535 | False | 322 | lncRNA | 0.33 | 1 | 16467628 | 16467949 |
| TU773536 | True | 299 | lncRNA | 0.42 | 1 | 16468003 | 16468301 |
16,428,000
16,432,000
16,436,000
16,440,000
16,444,000
16,448,000
16,452,000
16,456,000
16,460,000
16,464,000
16,468,000
16,468,000
16,472,000
16,476,000
16,480,000
16,484,000
16,488,000
16,492,000
16,496,000
16,500,000
16,504,000
16,508,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110529495 | LOC106571286 | coding | downstream | 22406 | 16439558 ~ 16445013 (-) |
| LOC100499588 | LOC100499588 | coding | downstream | 40914 | 16424860 ~ 16426505 (-) |
| gjb7 | LOC106571283 | coding | downstream | 80774 | 16383314 ~ 16386645 (-) |
| LOC118965674 | NA | coding | downstream | 178787 | 16288561 ~ 16288632 (-) |
| LOC118965673 | NA | coding | downstream | 179034 | 16288314 ~ 16288385 (-) |
| LOC110529498 | LOC106571289 | coding | upstream | 134085 | 16639846 ~ 16674144 (-) |
| LOC110529499 | LOC106571292 | coding | upstream | 180000 | 16685761 ~ 16720691 (-) |
| LOC110529501 | LOC106571293 | coding | upstream | 215401 | 16721162 ~ 16758117 (-) |
| LOC110529503 | lyrm2 | coding | upstream | 320258 | 16825797 ~ 16830629 (-) |
| LOC110529504 | mdn1 | coding | upstream | 324990 | 16830751 ~ 16893020 (-) |
| G679107 | NA | non-coding | downstream | 4367 | 16462828 ~ 16463052 (-) |
| G679105 | NA | non-coding | downstream | 5265 | 16461922 ~ 16462154 (-) |
| G679104 | NA | non-coding | downstream | 5554 | 16461484 ~ 16461865 (-) |
| G679102 | NA | non-coding | downstream | 8625 | 16458300 ~ 16458794 (-) |
| G679089 | NA | non-coding | downstream | 32120 | 16435100 ~ 16435299 (-) |
| G679332 | NA | non-coding | upstream | 313170 | 16818931 ~ 16821129 (-) |
| G679364 | NA | non-coding | upstream | 396492 | 16902253 ~ 16910145 (-) |
| LOC110529508 | LOC106571332 | non-coding | upstream | 420151 | 16925897 ~ 17037936 (-) |
| G679407 | NA | non-coding | upstream | 548215 | 17053976 ~ 17100186 (-) |
| G679087 | NA | other | downstream | 34405 | 16432621 ~ 16433014 (-) |
| G676635 | LOC106571254 | other | downstream | 1950891 | 14508329 ~ 14516528 (-) |
| G676178 | NA | other | downstream | 2179074 | 14287849 ~ 14288345 (-) |
| G676077 | NA | other | downstream | 2259794 | 14206987 ~ 14207625 (-) |
| G675834 | LOC106571238 | other | downstream | 2481311 | 13983626 ~ 13986108 (-) |
| G679210 | LOC106571290 | other | upstream | 119329 | 16625090 ~ 16630259 (-) |
| G679471 | NA | other | upstream | 607782 | 17113543 ~ 17114528 (-) |
| G681659 | NA | other | upstream | 2285469 | 18791230 ~ 18792137 (-) |
| G684844 | NA | other | upstream | 4973005 | 21478766 ~ 21479203 (-) |
| LOC110529207 | sprtn | other | upstream | 5414666 | 21920427 ~ 21926307 (-) |
