LOC110529498 (LOC106571289)


Basic Information

Item Value
gene id LOC110529498
gene name LOC106571289
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16639846 ~ 16674144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611735.2
TGTAGGGACGGGAATCTATCATTTCTGAGAACTGCACTCACCTTTTAACCTGGCAAACGGAATCCGCTCTTGACAGACGGAAAACAGGGCGTAGGCTATATGCTCACATATACTGATAGGGAGAGAATCCGAGCCATCTGACGTGGAAGGATTTATAGGTTTAGACGAAATTGCTTTCCGACAGTGAGATCAAATACAGTGGCATGTTtcagtgtgtatatgtgtctgtAGTATTTCACATTGATTTGGCGCGAACGGTAGCCTACCAAGGATCATGCCCGAGGCACGTAAAACGTTTTCACTGTAGCCTTTATTTTCTGAAACTGGACTTTTGGACAACTGGGTCCAGAACGCTGTCAGTGTGGAAATTATGTCCACGGATGTCCTACTTCTTCTGCTACTTGTCTGGATGGTCGGTGCTTCTGGGAGGTCAATTGGTCCGAGGGGACACGTGCGCCAGACCTACAGCCAAATCAGATTCAAACGAGAAGTACCATCGACTGTACAAGGACGTCAAAAAGTTAGCAGCCCTATACTGAGAAGAAGTCCAGATATGACCAAAACCACCATGACAAAGTCAGAGCAGCTCTTAAGCATAAATGACCACGACTTCACAATGAGGCCTGGCTTTGGAGGACACACTGTTCAAGTTGGAGTTGATGTTCAGGTAGAAAGTCTGGACACAATTTCAGAAGTTGACATGGACTTCACCATGACCCTGTATATTAGGCACTACTGGAAAGATGAGCGCCTTTCTTTCCACAGCACCACCAATAAGAGCATGACCTTCGACGGGCGCCTGGTCAAGAAGATCTGGGTGCCTGACCTGTTCTTTGTCCACTCCAAGAAGTCTTTCACACACGACACCACCACAGATAATGTCATGCTGAGAGTCTACCCTGATGGCAAGGTGCTCTACAGCTTAAGGGTGACGGTGACATCCATGTGCAGTATGGACCTGAGTCGCTTCCCTCTGGACACACAGACCTGCTCCTTGGAGATCGAGAGCTATGCGTACACGGATGACGACCTGATGCTCTACTGGAAGAAAGGGAACAATTCCCTGAGTACTGACGAAAGGATCTCCCTCTCCCAGTTCCTCATCCAGGAGTTCCATACCACCAGCAAAAAATCCTTCTACAGCAGCACAGGGTGGTACAACCGTCTGTACATCAACTTCACCCTACGACGCCACATCTTCTTCTTCCTGCTGCAGACCTACTTCCCTGCCACTCTGATGGTCATGTTGTCCTGGGTGTCTTTCTGGATCGACCGCCGGGCCGTACCGGCCAGGGTTCCTCTGGGTATCACCACGGTGCTCACCATGTCCACCATCATCACTGGAGTCAACGCCTCCATGCCCAGGGTTTCCTACATCAAAGCTGTGGACATTTACCTCTGGGTCAGTTTTGTGTTTGTGTTCTTATCGGTGATAGAGTATGCTGCAGTGAACTACCTGTCTACGGTGCAAGAACGGAAGGAAAGAAAGCTACGAGAAAGGCTGCCCTGCACCTGTGGCATGACCCACCCAGGCATGATGGGTAGCTACAGCGAGGATGATGTCAACAACACTGGGAACTATGGCGGTGAGTCGATGGAGAACGGCGCTGCAATGCAGCAAAGGATGATGGTCCATCTGGACTTTGAGGAGAACGACCAGATCACAGGACACGTGGGCTCCAGCGCTTACAGCAGCATGTGGATCGACACCCACGCCATAGACAAGTATTCCCGGGTCATCTTCCCTGGGTCCTATATTCTGTTCAACATCATCTACTGGTCCTGCTACCTCTAACACTGCACGGAATGGGATGGAGGTAGACATAcccacagaactagaatgaatTCTATTCATTCTAATGAGTTATATTAATTATATTATTTTTCTATGAAAATACCCAGGGTGTATGCACCTGGAAAGGAACCACAACTCTGACGATGTGATGATGCAAAATGCTAAACCATGGTACCTGGATTTCTGTACCTGAGATATAGAGGGCATGCCATGCACAGCACACAGACTCAAACACAGCAGTTATTGTCATTTTGAACACCTATATGTTGGTGTTTTATATGTCCGGGGAAGTAATGAGTTCATGTAATGATTAATAAATAATGGGCTGGCTTGTATCCGTAGCTTAAAACTTCATTGAGTTTTTATCCACATTGAGAATTGCAAAAACTGTAATTTAGTTGAGTTGTCATTgccaatataaactcagcaaaaaaagaaacttcctcCCACTGTTATTTACAGCAAACTAAACATATGtagatatttgtatgaacataagattcaacaactgagacataaactgaacaagttccacagacatgtgactaacagaaatgaaaTAATGTGTCCGTGAACAATGGGggtgtaacggccgttggtgaaaggtgaggaccaaagcgcagcgtggttcgtcatttattaaatagaactgaaccctaaatacaaagtaacaaaaataacaaccga

Function

NR:

description
gamma-aminobutyric acid receptor subunit rho-1-like

GO: NA

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611735.2 True 2482 mRNA 0.46 10 16639846 16674144

Neighbor

gene id symbol gene type direction distance location
LOC118965497 NA coding downstream 134085 16467419 ~ 16505761 (-)
LOC110529495 LOC106571286 coding downstream 194833 16439558 ~ 16445013 (-)
LOC100499588 LOC100499588 coding downstream 213341 16424860 ~ 16426505 (-)
gjb7 LOC106571283 coding downstream 253201 16383314 ~ 16386645 (-)
LOC118965674 NA coding downstream 351214 16288561 ~ 16288632 (-)
LOC110529499 LOC106571292 coding upstream 11617 16685761 ~ 16720691 (-)
LOC110529501 LOC106571293 coding upstream 47018 16721162 ~ 16758117 (-)
LOC110529503 lyrm2 coding upstream 151875 16825797 ~ 16830629 (-)
LOC110529504 mdn1 coding upstream 156607 16830751 ~ 16893020 (-)
LOC110529508 LOC106571332 coding upstream 251753 16925897 ~ 17037936 (-)
G679107 NA non-coding downstream 176794 16462828 ~ 16463052 (-)
G679105 NA non-coding downstream 177692 16461922 ~ 16462154 (-)
G679104 NA non-coding downstream 177981 16461484 ~ 16461865 (-)
G679102 NA non-coding downstream 181052 16458300 ~ 16458794 (-)
G679332 NA non-coding upstream 144787 16818931 ~ 16821129 (-)
G679364 NA non-coding upstream 228109 16902253 ~ 16910145 (-)
G679407 NA non-coding upstream 379832 17053976 ~ 17100186 (-)
G679210 LOC106571290 other downstream 9587 16625090 ~ 16630259 (-)
G679087 NA other downstream 206832 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 2123318 14508329 ~ 14516528 (-)
G676178 NA other downstream 2351501 14287849 ~ 14288345 (-)
G676077 NA other downstream 2432221 14206987 ~ 14207625 (-)
G679471 NA other upstream 439399 17113543 ~ 17114528 (-)
G681659 NA other upstream 2117086 18791230 ~ 18792137 (-)
G684844 NA other upstream 4804622 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 5246283 21920427 ~ 21926307 (-)
G685953 NA other upstream 5484886 22159030 ~ 22161042 (-)

Expression


Co-expression Network