LOC110529499 (LOC106571292)


Basic Information

Item Value
gene id LOC110529499
gene name LOC106571292
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16685761 ~ 16720691 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611736.2
TGCCTTGGTTTGGAGTGCGTTGAAACCAACCGCTGTGGACCAATCAGGGAGCAATAAGCGGGACAAGCCGCTTGGAGTCGTAAACATATCTGTCGTTGTTACTTAATCAACCGACACACTGCCTCACTACAATGCATGTTACCACACATGTTCTGCTTTAGATCAGAATACGCTACAATGCTCAAACCATTGCGTTCGTCGATTAAAGGGATTTCTTCACTCACTCGACGACTTTTGAGTTTCACACATAATGCCTTATTATATTAAGtacctgtttttaattttttgcTTGATACTTATCGGGGAATGCCGAAAGCACAAAAGTCGGAAAAGGCGGTGGTCCGGGGCGGTAGAATCTCACAAGCATGGCGCTCCACTGACTGGAAAAAAGATAGTTGATAACACCAAATCTCACAAGGTGAAGACAGACCACCTGCTGCGAGTTGATGACCATGATTTTACCATGAGACCAGCCTTTGCAGGCCCTGCTGTCCCCGTGGGAGTGGATGTTCAGGTGGAGAGTTTGGACAGTATATCAGAAGTGGACATGGACTTCACTATGACCCTTTATCTGAGGCACTACTGGAAAGACGAGAGGCTGTCCTTTCCCAGCACAACCAATAAGAGCATGACGTTCGACGGTCGCCTGGTCAAGAAGATCTGGGTGCCTGATGTGTTCTTCGTCCACTCCAAGAGGTCGTTCATCCACGACACCACCACAGAGAACATCATGCTCAGGGTGTTCCCAGATGGACACGTGCTCTACAGCCTTAGGGTGACGGTTACTGCTGCCTGTAACATGGACTTCAGTCGTTTCCCTCTGGATTCACAGACCTGTACATTAGAGCTGGAGAGCTATGCTTACACGGATGAGGACCTCATGCTGTACTGGAAGAGTGGGGATGAGTCCCTGAGCACCGACGAcaggatctctctgtctcagttCCTCATCCAGAAGTTTCACACTACCTCTAGACTGGCTTTTTACAGCAGCACAGGGTGGTACAACCGTCTGTACATCAACTTCACCCTGCGACGCCACATCTTCTTCTTCCTGCTGCAGACCTACTTCCCTGCCACTCTGATGGTCATGTTGTCCTGGGTGTCTTTCTGGATCGACCGCCGGGCCGTACCGGCCAGGGTCTCACTAGGTATCACCACGGTGCTCACCATGTCCACCATCATCACTGGAGTCAACGCCTCCATGCCCAGGGTTTCCTACATCAAAGCTGTGGACATTTACCTCTGGGTCAGTTTTGTGTTTGTGTTCCTATCGGTGTTGGAATATGCTGCCGTCAACTACTTGACGACGGTGAGGGACGGAAAAGATCGGAAGcttagggaaaaggccagagagCAGTCGCTGAGCCTAGCCAGAGAACAGTCACTCCCCTGCACCTGTGGCATGTCCCACACTGGGACCGTGATGGTGGATGGCGACGGGACCTACAGCGAGGCCGACACCAACAGCCTGGCCGGATACACCAGGGCTGACGCTCCCGAGGACACCCCAGAGAAGCAAGAGCACATGGTGGTGCACCTATCCCTGGACAATGAGTCCACGGGAACCAAGAAGAAAGCGCGCTTCCGCAGCTTCAGCCTCATGCAGAACACCCACGCCATAGACACCTACTCCCGCATGATCTTTCCAGGATCCTACATTATCTTTAACCTCATATACTGGTCTGCATACTGCTGAGGCTCTCCCAGATGTTCCTGGTACAGTCAGCAGAGAGACAATCTACTGGTGTTTACTGTACCAGATAAAACAGGACAGCTATTGGACTCTGATAATGACTCAAAGTGGTAATGACCTCCATATCTTAACACCTGGGTGCATAACGGCAGATCTCACAAAGGATTTCCCAGATCTCTGGATGGATAACACCATACTATCCTCACACCATTAGCTACAACCATCTTACTACTTGACTCAACTGTACAGCTTTCCTActttctctatataaactatttaCACAACCATGCAGGTCCAAGCAACAAACTACGATGGACTACCTACCTGCTCTTCTCCTATTTATTTCAATTTGATCTCTGGAATCAATGCTGTTTTATCTTCATGGTACTGTCAAAGCAGGGAAACAATATCTGTAATACTGACAGTATATGTACATCTGGAATGGACTAAGTGTTGCCCAAGCTTGCCTCTTTAACCAGAAAACAGAAAGCTTGCTCTATAATGCGAGGGTTTGACCTCTAAACCACGTTTATTTGACAGATCAGAGTGAGTGCAAGCACCAATTGCTAATGAGCACATTGAAACACAGCCACAGACTTGTCTTCTAGGAATGCACCAAGTGTTATTATTTTTAACAGTTGATAATGATTGAGAAAACCACACAAAAATGTAAACCGACATAATACAAGATGGAATTATCATGAAAAAGATTCACATAGATACAGtatttcattgtttatttcattGTTTATTCATTATTAacctatttatttattcattcatttttGGCCTTTCACTTTACTTACATAATTACTTTATAGTGCACTGATAGAATCATATTCCATTATACCTTAAGATGTTAAAGACAATGAGACTGGATAGATTTTTCAGAGTGGCTGCAGTTCCCGAATTTCTTATGAGGTCAGTGGTCACAGAAATTCAGTGAGGATGGATACCATTTATGAATGCTTATGTGAACTATTATGAAGCATTATCAGTGATGTAATGAACTTGAACAGCCTTAAGTGAACTGTTTCTTTTTTATGGCTGTGGTTCCACGCCACAGCTATattttttctgtttgtttgtttgattgaCTGTTTGGATTACGAGTGACTACATATCGCTTTGTGCAAGTTTTCTAGACAGTATTCTAGCCAACCAATATATTAGTAAACatggtactgtatgtagtaaGTAGGTAGCCACAAGCATGAGCTGGATTTACTAGGCTGTGATGTCACTCATCAGAACGCACGAAGCTCTTGCATCCATATTGCCGCTGTAGATATGTCAGCATGTTGGACAAATGCTTAACCAATGCAAACCACCTCATGCAGATGCTTGTCCACAAGCTGCACAACTACGGCTGATTATTGTTGCATCAAATATTAAGAATGTATCCTTTTTGGAGCAGATTTTATAAATAAAGGCTTTAAACTAAAAA

Function

NR:

description
gamma-aminobutyric acid receptor subunit rho-2-like

GO: NA

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611736.2 True 3143 mRNA 0.45 10 16685761 16720691

Neighbor

gene id symbol gene type direction distance location
LOC110529498 LOC106571289 coding downstream 11617 16639846 ~ 16674144 (-)
LOC118965497 NA coding downstream 180000 16467419 ~ 16505761 (-)
LOC110529495 LOC106571286 coding downstream 240748 16439558 ~ 16445013 (-)
LOC100499588 LOC100499588 coding downstream 259256 16424860 ~ 16426505 (-)
gjb7 LOC106571283 coding downstream 299116 16383314 ~ 16386645 (-)
LOC110529501 LOC106571293 coding upstream 471 16721162 ~ 16758117 (-)
LOC110529503 lyrm2 coding upstream 105328 16825797 ~ 16830629 (-)
LOC110529504 mdn1 coding upstream 110060 16830751 ~ 16893020 (-)
LOC110529508 LOC106571332 coding upstream 205206 16925897 ~ 17037936 (-)
LOC110529509 LOC106571331 coding upstream 335424 17056115 ~ 17081579 (-)
G679107 NA non-coding downstream 222709 16462828 ~ 16463052 (-)
G679105 NA non-coding downstream 223607 16461922 ~ 16462154 (-)
G679104 NA non-coding downstream 223896 16461484 ~ 16461865 (-)
G679102 NA non-coding downstream 226967 16458300 ~ 16458794 (-)
G679332 NA non-coding upstream 98240 16818931 ~ 16821129 (-)
G679364 NA non-coding upstream 181562 16902253 ~ 16910145 (-)
G679407 NA non-coding upstream 333285 17053976 ~ 17100186 (-)
G679210 LOC106571290 other downstream 55502 16625090 ~ 16630259 (-)
G679087 NA other downstream 252747 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 2169233 14508329 ~ 14516528 (-)
G676178 NA other downstream 2397416 14287849 ~ 14288345 (-)
G676077 NA other downstream 2478136 14206987 ~ 14207625 (-)
G679471 NA other upstream 392852 17113543 ~ 17114528 (-)
G681659 NA other upstream 2070539 18791230 ~ 18792137 (-)
G684844 NA other upstream 4758075 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 5199736 21920427 ~ 21926307 (-)
G685953 NA other upstream 5438339 22159030 ~ 22161042 (-)

Expression


Co-expression Network