Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110529505 |
| gene name | LOC106571335 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 16893102 ~ 16921697 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| CASP8-associated protein 2-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005052819.1 | False | 9054 | mRNA | 0.43 | 12 | 16893102 | 16921044 |
| XR_005052820.1 | False | 8431 | mRNA | 0.43 | 13 | 16893102 | 16921044 |
| XM_021611749.2 | False | 7541 | mRNA | 0.44 | 10 | 16893102 | 16921697 |
| TU773135 | True | 762 | TUCP | 0.40 | 5 | 16893159 | 16894835 |
16,884,000
16,888,000
16,892,000
16,896,000
16,900,000
16,904,000
16,908,000
16,912,000
16,916,000
16,920,000
16,924,000
16,928,000
16,932,000
16,936,000
16,940,000
16,944,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110529502 | LOC106571295 | coding | upstream | 67086 | 16793718 ~ 16826016 (+) |
| LOC110529497 | LOC106571290 | coding | upstream | 262834 | 16624843 ~ 16630268 (+) |
| LOC118965606 | NA | coding | upstream | 460849 | 16428557 ~ 16432253 (+) |
| LOC110529494 | slc35a1 | coding | upstream | 469131 | 16413775 ~ 16423971 (+) |
| cfap206 | cfap206 | coding | upstream | 481721 | 16406235 ~ 16411381 (+) |
| LOC110529507 | LOC106571333 | coding | downstream | 79 | 16921776 ~ 16925688 (+) |
| LOC110529193 | NA | coding | downstream | 758508 | 17680205 ~ 17681988 (+) |
| LOC110529511 | LOC106571328 | coding | downstream | 760367 | 17682064 ~ 17701475 (+) |
| LOC110529515 | LOC106571324 | coding | downstream | 903739 | 17825436 ~ 17833210 (+) |
| LOC110529518 | LOC106571322 | coding | downstream | 924021 | 17845718 ~ 17857814 (+) |
| G678616 | NA | non-coding | upstream | 181517 | 16682141 ~ 16711585 (+) |
| G678618 | LOC106571292 | non-coding | upstream | 205589 | 16685786 ~ 16687513 (+) |
| G678472 | NA | non-coding | upstream | 425592 | 16467196 ~ 16467510 (+) |
| G678469 | NA | non-coding | upstream | 428252 | 16464568 ~ 16464850 (+) |
| G678466 | NA | non-coding | upstream | 432600 | 16460254 ~ 16460502 (+) |
| G678833 | NA | non-coding | downstream | 69409 | 16991106 ~ 16991589 (+) |
| G678915 | NA | non-coding | downstream | 184452 | 17106149 ~ 17106450 (+) |
| G678918 | NA | non-coding | downstream | 190631 | 17112328 ~ 17112646 (+) |
| G679497 | NA | non-coding | downstream | 279528 | 17201225 ~ 17251687 (+) |
| G679572 | NA | non-coding | downstream | 340320 | 17262017 ~ 17265145 (+) |
| LOC110529493 | LOC106571284 | other | upstream | 504766 | 16387411 ~ 16390869 (+) |
| G678417 | LOC106571283 | other | upstream | 507157 | 16384802 ~ 16385945 (+) |
| LOC110529464 | LOC106571299 | other | upstream | 1633112 | 15258311 ~ 15260331 (+) |
| G676919 | NA | other | upstream | 1785959 | 15105603 ~ 15107143 (+) |
| LOC110529454 | LOC106571249 | other | upstream | 2134178 | 14749575 ~ 14758924 (+) |
| G681909 | NA | other | downstream | 2242239 | 19163936 ~ 19165640 (+) |
| G682611 | NA | other | downstream | 2807136 | 19728833 ~ 19729671 (+) |
| G683669 | NA | other | downstream | 3641178 | 20562875 ~ 20563434 (+) |
| G683757 | LOC106571373 | other | downstream | 3705253 | 20626950 ~ 20632899 (+) |
| G683845 | NA | other | downstream | 3785361 | 20707058 ~ 20707371 (+) |
| G678746 | NA | non-coding | downstream | 6468 | 16901303 ~ 16901967 (+) |
