LOC110529508 (LOC106571332)


Basic Information

Item Value
gene id LOC110529508
gene name LOC106571332
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16925897 ~ 17037936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611751.2
AACAAACAGCGGAGACTGAGCAGCACGCTGCGCAAAATcgtcacacacactgacatttgCTGAAGAAGAACAATAACCATTTTTATAACTAGAAAACGTAATTTTTATAAAAAAGAAATAAACGAATAGTGTAAAGCAAATGTTTTCTCCCTGCAGCCGGGGGCTTTAGGAAACTGCAAGGAAGTCAtcatgtgaagaaaaaaaattgttaaacGGACAAAAGGGCTGGATTACAAGAAAAAAAGCGAAAGTTAAAAGGGCGTGAGCGGAATGTCCGTGGATGAGAAGCCTGAAGCCCCCATGTACGTGTATGAGTCGACGGTTCATTGTACCAATATCCTCCTGTGCCTGAACGACCAGCGGAAGCAGGATATCCTGTGCGATGTGACTGTCCTGGTGGAGGGAAAGGAGTTCCGTGGCCACCGGGCCGTGCTGGCCGCCTGCTCAGAGTACTTCTTGCAGGCTCTGGTGGTACAGGTCGAGAATGACTTGGTCCTCAGCCTACCTGAGGAGGTCACTGCCAGGGGATTCGCCCCATTGTTGCAGTTTGCCTACACTGCTAAGCTGTTACTCAGCAGAGAAAACATCCAGGAGGTCATCCGCTGTGGCAAATTCCTGCGCGTGCACAACCTGGAGGACTCGTGCTTTCGCTTCCTGGAGGCCCAGCTCCGCAGTGAGGAGGATGGCCTGCTGCTGTGCCACAAGGTGGCGCCGGCCGAGGGCAACCACAAGACCGAGGACGAGAACATGCAGTCTGAGACGACAACAAAGGCAGCCTCCCCCCAGGCACGCCGGCGCTCTGAAGCCCTTTCCTCCTTGCGGCGTGCCCCGGACAAGGACCGGCTACCCGTGGCGGTGCCCAGTGACTTCAGCAACGTACGACTGGACTTCGACAGACACGGAGCATCCGACCTCCCCCGCTGCCCCAAATACAGGAAATACCAGTGGGCCTGCAACAAGCACAATAACGACACCTCCTCACACACCAGTACCTCAGGTTTACCAAGCACATTATTATTAAAGGAGACCAGCGGTGGCATCAGCGGCGAGGCGGTCCGGGGCCAGAGCATGTCGCCGGTGGCAGACATCAAAGTGGAGCCGCGGGCAGAGGAAGAGGCCATCTCGCTGTGCCTGTCAGGGGACGAGCAGGGCGGCCTGGACAAGGAGACAGGCATGGAGATGGACAGTGTCCCAGTATTGTCCGCCTCCTCCGCCAAGAGGAGCCAGTCCCCCACCTGCCTCCGCGCCTTCTTCAAAAAAGGAGCAGACCTGCCGGGTCTGCCCAACGTGTCGCAGCAGCTATTTGCCAACAGACTCACCAGCGTCTGCCCCCAAGACAAAGGAACCACTCTGGAAGATCACAAAACAAAAGACTTCAGGCCTCTCAATGCTGGGGAGCTGGGCCTGTCTGTTACATCCCTGAAGGAGGTAGACGGCTTCCCTCTGAGGCTCTCGTCGCTGAAGTCCACCTCCTGCGATGGCGTCTGTAAACAGGAAGTGGAGCTGGACCGCCGCAGTGTCATCTTTTCCTCCTCAGGGGCCTGTGACCGTCTGGGCTCCCCGACGCATTCCTACCCCGGCGGGAGCTCTTTGGAGATGGAGCACTCGGAGCACACGTCAATGGGCCTGTGGGCTGGTGCCAGCCAGTCCCTTCCCAGCTCCCAGACCTACTCCCCGAGCAGTGCCCCCTCCCTCGCCTCCGCCACCACCGAGCCCCCGCCGGTCCTTTGTCGCCCGCTGCCAAACACCAGCTGCCCAGTGCCAATCAAGGTTTGCTCGCGCTCGCCGCCCTCTGAGACCCGCACACGGACCTCCAGCTCCTGCTCCTCCTACTCCTACGCGGAGGATGGGAGCGGCGGCTCACCCTGCAGCCTGCCCCAGTTTGAGTTCTCCTCCTCGCCGTGCTCCAACGTGGCGCTCCGCCTCGCCGCCGACCAGCAGGAACAGGGCGTGATGGGGGGGGACACCCTCTTCAACCAGGTTCGCCCCAAGATCAAGTGCGAGCAATCGTACGGCACCAACTCCAGTGACGAGTCGGGATCCTTCTCCGAGGGTGACAGCGAGTCGTGCCGAGTCGATCAAGGGCGAGAGGTAAAACTTCCTTTCCCTGTTAATCAAATCACAAATCTTCCACGGAACGACTTCCAAATGATGGTAAAAATGCACAAACTGACCTCAGAGCAGCTGGAGTTCATCCATGACATCAGGCGGCGGAGTAAGAACCGCATCGCAGCGCAGCGTTGTCGCAAGAGGAAGCTTGACTGCATCATGAACCTGGAGTGCGAGATCAGAAAACTGGTGAACGAGAAGGACAAGCTGCTGACGGAGAGGAACCAGCTGAAGGAGTGTATGGGCGAGCTGTGGGAGAACTTCTCCTGTCTGTCCCAGGAGGTCTGCAGGGACAGACAGCTGAGTCCGGAGCAGGTCCAGTCCCTGAACCACCACTGCCCTGTCCTGAAGCCCGGCACCACCAACGCCACCACCACTGCCAGCAACGCTGCCTCTAACAGCATTGACCTCATCACCCACTCCAGCTCAGCCACCCCGGAGCCCAGCTTCCTCAAGTCCTCCGGGCCCTCAGAGAGCGAGCCTGATTGGGCCATGGGCAACGGGGCTGATGGGGGGCCAGGTAGCAATGAGGCGGAGGGCCAGGAGCCAAGTTTATACATGGAGTCGGGGTTCTCGTTCAATGAACAGTCCAATCAGACGGTGACGGTAGACTTCTGCCAGGAAATGACTGATAAATGTACAACTGACGAACAGCCGAGAAAGGACTGTACTTAGTAAACTGTGGTTTTaatgttttttattatttaatttcTAGTTTTTATTTTCTTCTGACAAACCCCTTCCTCTGGGTTGGTGAGATGTTCAGCCTCTACCAGTGTTCTTTAAACAACaggtttttttgtttgtttttatttatgtCTTTTTGTTGTCTTTTTATAGGTTGACACTACAGTTGTCTTAACAGCAATACTGTTCTCCAGGTATTCTCCTCTCTGTAACCATGACAGAATAGGGACTTCCCACACCAAACTCAGCTCACAATGGTGCTCCACCATGCCCCGTCAGGAAGCAACCTCTACAGTGGACACACTGTTCTCTATCTATACAGTCTACTCACAGGGATGGGCAAAGATCACATCTTCAATTCAAACCTCAATGGACCTAACAGCAGCACTCTTTGTCTCTCGATCTACCTACagtttctatctctctttctttgtctttctatttctctcgctctccctttctctctctctctgtctctctcactctctcctactctgTCTATTTTCCTATCACTATTTCTACATCTAACACTtccactctatttctctctctcactatctttctaattccctcactctctcttgtGGCTCTTGTCACAGCAATTCAAACTCAGGAAAATATATTCTGAATGTTCAACATGATTCATGAAAATAAGAATTCAGCTTCTGTATATGAGAGGTTTTTGAAGCAGACTGTAAATGTTCATatgcaaaaatgtattttgtacagCAAAACTCTGTGTACAGACAGTACCTTAACATTCCTCCTTTGCCTTCCTCAGCACTGAAACAAAAGAGAAAAACAAACGATTTGGCAGGTGGTTCCCAAATAGCTATGTTCCCATACATCAGCAAAATCATTGTATTTGGATGTTGTAATGGTAACTTTCAAGTACTTGCTTGGGCAGAACGTAATAACGTATAATGTATGGCGCATGGTGACTGTCACAGTAATATTGTACAGGTAGTGGCTTAGACATTTCTTTTTCACTGGGGTTATATCAAGTACCTTTTTGCTAAGGGAAAATATTTGCTTAGCTTTTTCCTGATTAAAGGAAAATTCGACATAAAGGTGGGTGTTCTTAAACTCAGGAAATcagcttgacacacacacacacacacacacacggatgttGCTGGCGAGGACAGTGTAAAGTATGTTATTAATCCGTGGCTTGCGCAACATCCTTTCAAACTTTGACACCTCTTTAAATGTGAAAAATAGTTTAGGCTTGTTGTGTTTTTGAGGAAACTTTCTTTCTTTTTATCAGTATTTAAAGATGCTTTATGTATGATGGTGAACCCTCTCAGACACCCTTTGAATATCTTCAGTGTTTATGTTTCAATGTGGTCGAGAAATTTGACAATAGATACCTTTTCAAGCTGAGGGACAGATATTCTGTCtgtaacaaaaaaacacacacaaaatatttaTATTTGACTAAGGATACTTTCTCCAATGAATCTGGGCTCAAGATCAGGCACTTTCCTTCCAGCACCAGACACTCCATTGTAACTAGATCCTATAGCACTTCATAGAGGGTCTACGTCAGGTTCAGAACCCTGAAAACACTGATGCTGGAGCACTTGAATTGGCACTTAAATTAAAACATCTTATTGATATAAATATATCTATGAAGACATTATATTCAAAAACCTAAAGCAATCAGATGTATTATAAAAAAGAAAGCCAACATAACATGTAGAGAGTGTTCACATCTTATATTTGTATTTCTTTCAGAATGAATCATTTATTTGGGACTTGAGTTCATGTGAAAGCATGATAGTAACATGTTTGCCCTGATTGTACATTTGTTGAAATCATAATATTCTGTGATGTGAATGCATGCTGCCTGTATATTTGACCTAGTTATTTTGTCTAGCTTATGTTTGCTTCTAACAATAGTCCTCAGCTAAATTATTTAGTCCATCTTCTGATGAACAATATTTAAGCAGTAAggtacctcgggggtttgtgatatatggccaatataccagagctaagggctgttctaagggctgttcttaggcaatCAGGAGTGCCTGGatgcagcccttagccgtggtatattggccatataccacaaaccccagaggtgccttattgctattataaactggttaccaacgtaattagagcagtaaaatgaaataaaatgaaaatacaaaaaatgagaaatagagacagaacCTGTCTTTACAGTGAGTGAATTCAATTGGAATAAAAAGCTTTACTCATAGCTTTAACTTCATTCAGGATGAAAAGTTATACAGTGTCGGAAAGAGCGATATTATAAACTgagtggtttgagccctgaatgctgattggctgacagccgtggtatatcaaaccgtataccacgggtatgacaaaacatgtactttaactgctctaattacgttgataaccagtttataatagcaataaggcaccttgggggtttgtggtatatggccaatataccacagctaagagctgtatccaggcactcggCGTTGCGTCGCGCATAagcacagcccttagccatgataTAGCGCCCCccccgtgccttattgcttaaatatacaccTTGATGACTGTCTGCAAATTCTTATTGGCGTTACTCTGTCGCACCCTCTTGGACACAGCTGTGTAATACTCTCGTCTTGACTGATATCGAAAGCTGTTGTGATATTAGAGTGCAGCTTTGTAGAATATGTCTGTGTTTCGCAGTGTGCTAGGCTGAGTATTTGACCATTTAGATAAGGTTCCCTAAGATTTTAGTTAGATCCGTATACAGTCATACACAGACAACTAAAACATGCACCCAAATATTAATACACACACAATGTATGTCCAATGGCGTCTtttccccgggcgccgatgacatggatgtcgattaaggcagccccctgcacctctttgattcagaggggttgggttagatgtggaagacacatttcagttgaacgcattcagttgtacacctgactaggtatcccccttcccttaTGTAAGGAAGGAGTGTAGAGCAGTTGTacacctgactaggtatcccccttcccttaTGTAAGGAAGGAGTGTAGAGCAGTTGTAATTGTTGTTTGTGAGGTTCTTCTTCCACTTTGGCTTTTCTCTGATTCATATTCTATCACTGAATTGGAACAATATACATCAGTCTCCATTATCAGGTACAAAACAGGAAACACATTTGTCAAATCATATACAATTCCTACCCAATAAATGTACATTTACTTTCTCGTTTTTGACGTAAAAGTGGAAAGCATAATGGTCCACCAGAAAAGCACACTCTCATTAGGCTACACTTTGACAATGTGGGGGAAAATGGATTGAAATTCATAAAGTTTCTATTGTCCTCGGCCAATCAAAGCTATACCAACAGATATCTTTCAATATCTGTTGTTAGATGGCCTTATAATGCTATTAGGATTAATATTAATGTTATTCTTTGGATAGCAATGAGTGCATAGCCTATTTCTGGTTTGTACTGTACGTACAATAATTCATCATTGTTTATTCTCTACCTAGAGCCCCAAGATTGATATACAGTAAAGGTTGGTGGATGCAGATAgaagcccactgggcacagacattatttcaacatctagttttgatatacatttggttgagttgtcgaCTAATGTAAATGCAATGTGAAATCAATAAAAAACGTTTACCAtgccattggatttaggttaaaagctGGGTGAAAAAATATGccaatccaatcagttttccacattgattcactGTCACCACATTGAATTGTTTTGTTGAAATAACGTGGAAAGAACATTTAtgcaaccagtttttgcccagtgggaggtGATACAAAGTAATGAGGGGTTTTTAATGTAGCTGGTCAATTGCCAGTCCAGACCTCTTAGCTCTCTAGTCCTGAGAGAGCTACTCCATGCTTGCTATGCTGTATGGGGTGTTACTATGGTGACCAATGGTTGAAAGTAGTACATGATCAGGTCATCTCTACAGTTACCCCAAGCATTACgggtcaaataagcttgttgtgtGTCATCATCTCATTCACACAGAGATTTGTCTGGTTGACCTAAACCAGGACTAGTCATTGGTCTTGTATATCGTCTCAGGGTGCCGAGCATTTTATTTCTCCATTTCTGAATCTGTAGCAGACTTTTGTACTTTAGCTGGTTTCTGGCTGTGTTTGAGTGTCTGAAAGTTTAGCTCACTTCTAACCTCTGGTCTTATACTCCTGAAGCTAATTTCTACAAATGCGGAATAATAAGCTTTGCACAATACAGATGAAAGTCATTAAGAGCTGCAGAGAGAGTACTCAATACATTGGAGTaaacatacatatatattttaattctGTTTTGGTAGTAAATACAACAAAATGTTTCTCGCTCTCAAGTTCCTTACCTCTGCAGTTTTTTACAAGCCAAAACTCAAAAAACAGTAATGTTATTTGATTTGTTAGCTGGCTATGGTAATTAGTTGGTGGATATTTGTTGTAAAGCTAGATGCATTGAATTCATTATCTTTTTGAGAGGCTTTTGTGCTGTATTCATTTCTCGTTTTGTTtcactgttttgtttgttttagttgtttTTGTGTGCTGCTTTGAAAGAAAAAACACTGTCTGTCCAACTCCAAAGGTTGTTCTTTTGAAAAGATGAACAAAGCTTGCCTTTTTCACAAATTGCTCAactttataatataatatactggttTCCTGATTGAATGCACAGGCTGAGATCATTTTAGGAGTAAAAGAAAagtttgaaatgtttacaaaacgGTATCACATGTCATGATGTGTTTATTACATTTGTCATGTAAATAGAATTTGCTAGGTTAAAATTGGACTGAAGGTTAGTTTTCTGTAAACAAAAAATGATGTGTTTTCTCAACTTGTCTTTTCATTCAACTGGGGATGTTTCAGAGTTACATGGATACAAGTGCACCTCCAATTTTTGCCTTAGAACTTGCAGAGGTCATAGTTCACATTCAAGTGAAGTGAGTGTATGCAGGGgcctacgcccccccccccccccatccctgaGTCACACCCAGTGCAGACCTTCTCACACTTATCTACCTGTGAAATCCTTCATACCTCTCATTACTGGTCAATGACTGTATCAGCCAACTTCATCAGGTGTTTTTTCTACATGCTTTTTACACAGATTATATGGATTATTGTATTAGTAGATTTTGGTTCATTATTTTTTATGTAAAAGCTCTTTTACATAATTTTTTCTCTCGTTTTTCTAGAACAGTTTTTTGTTAATATTGTCATTTTGAAATAGCTGTAATTTGCTTATTCTCTATTAAGAGTTCTTACTCTTTTCATTTTGAAATGCTACACGACCCTAATGAATTAAAATGACTTATTAACCATTTTAAACACGGTATTGTGCAAACCCCATTTTCATTCATTTCAATTGCTAGCGTTATATAAAGGACATTTTTGTCTAGACACCATTTCTGTTTATGAAATAAAGAAACATATCATGTG
>TU773796
ttttaattctGTTTTGGTAGTAAATACAACAAAATGTTTCTCGCTCTCAAGTTCCTTACCTCTGCAGTTTTTTACAAGCCAAAACTCAAAAAACAGTAATGTTATTTGATTTGTTAGCTGGCTATGGTAATTAGTTGGTGGATATTTGTTGTAAAGCTAGATGCATTGAATTCATTATCTTTTTGAGAGGCTTTTGTGCTGTATTCATTTCTCGTTTTGTTtcactgttttgtttgttttagttgtttTTGTGTGCTGCTTTGAAAGAAAAAACACTGTCTGTCCAACTCCAAAGGTTGTTCTTTTGAAAAGATGAACAAAGCTTGCCTTTTTCACAAATTGCTCAactttataatataatatactggttTCCTGATTGAATGCACAGGCTGAGATCATTTTAGGAGTAAAAGAAAagtttgaaatgtttacaaaacgGTATCACATGTCATGATGTGTTTATTACATTTGTCATGTAAATAGAATTTGCTAGGTTAAAATTGGACTGAAGGTTAGTTTTCTGTAAACAAAAAATGATGTGTTTTCTCAACTTGTCTTTTCATTCAACTGGGGATGTTTCAGAGTTACATGGATACAAGTGCACCTCCAATTTTTGCCTTAGAACTTGCAGAGGTCATAGTTCACATTCAAGTGAAGTGAGTCACACCCAGTGCAGACCTTCTCACACTTATCTACCTGTGAAATCCTTCATACCTCTCATTACTGGTCAATGACTGTATCAGCCAACTTCATCAGGTGTTTTTTCTACATGCTTTTTACACAGATTATATGGATTATTGTATTAGTAGATTTTGGTTCATTATTTTTTATGTAAAAGCTCTTTTACATAATTTTTTCTCTCGTTTTTCTAGAACAGTTTTTTGTTAATATTGTCATTTTGAAATAGCTGTAATTTGCTTATTCTCTATTAAGAGTTCTTACTCTTTTCATTTTGAAATGCTACACGACCCTAATGAATTAAAATGACTTATTAACCATTTTAAACACGGTATTGTGCAAACCCCATTTTCATTCATTTCAATTGCTAGCGTTATATAAAGGACATTTTTGTCTAGACACCATTTCTGTTTATGAAATAAA
>TU773797
AAACAGCGGAGACTGAGCAGCACGCTGCGCAAAATcgtcacacacactgacatttgCTGAAGAAGAACAATAACCATTTTTATAACTAGAAAACGTAATTTTTATAAAAAAGAAATAAACGAATAGTGTAAAGCAAATGTTTTCTCCCTGCAGCCGGGGGCTTTAGGAAACTGCAAGGAAGTCAtcatgtgaagaaaaaaaattgttaaacGGACAAAAGGGCTGGATTACAAGAAAAAAAGCGAAAGTTAAAAGGGCGTGAGCGGAATGTCCGTGGATGAGAAGCCTGAAGCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611751.2 False 8293 mRNA 0.44 5 16925897 17037936
TU773796 False 1101 lncRNA 0.32 2 16925912 16927054
TU773797 True 296 lncRNA 0.41 2 16964487 17037933

Neighbor

gene id symbol gene type direction distance location
LOC110529504 mdn1 coding downstream 32877 16830751 ~ 16893020 (-)
LOC110529503 lyrm2 coding downstream 95268 16825797 ~ 16830629 (-)
LOC110529501 LOC106571293 coding downstream 167780 16721162 ~ 16758117 (-)
LOC110529499 LOC106571292 coding downstream 205206 16685761 ~ 16720691 (-)
LOC110529498 LOC106571289 coding downstream 251753 16639846 ~ 16674144 (-)
LOC110529509 LOC106571331 coding upstream 18179 17056115 ~ 17081579 (-)
LOC110529510 LOC106571329 coding upstream 384830 17422766 ~ 17498984 (-)
LOC110529512 LOC106571327 coding upstream 668673 17706609 ~ 17720195 (-)
LOC110529513 LOC106571326 coding upstream 683031 17720967 ~ 17723873 (-)
LOC110529514 LOC106571323 coding upstream 690354 17728290 ~ 17756041 (-)
G679364 NA non-coding downstream 15752 16902253 ~ 16910145 (-)
G679332 NA non-coding downstream 104768 16818931 ~ 16821129 (-)
LOC118965497 NA non-coding downstream 457596 16467419 ~ 16505761 (-)
G679107 NA non-coding downstream 462845 16462828 ~ 16463052 (-)
G679407 NA non-coding upstream 16040 17053976 ~ 17100186 (-)
G679463 NA non-coding upstream 62495 17100431 ~ 17101124 (-)
G679485 NA non-coding upstream 91095 17129031 ~ 17129256 (-)
G679623 NA non-coding upstream 163318 17201254 ~ 17251247 (-)
G679642 NA non-coding upstream 184845 17222781 ~ 17227113 (-)
G679210 LOC106571290 other downstream 295638 16625090 ~ 16630259 (-)
G679087 NA other downstream 492883 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 2409369 14508329 ~ 14516528 (-)
G676178 NA other downstream 2637552 14287849 ~ 14288345 (-)
G676077 NA other downstream 2718272 14206987 ~ 14207625 (-)
G679471 NA other upstream 75607 17113543 ~ 17114528 (-)
G681659 NA other upstream 1753294 18791230 ~ 18792137 (-)
G684844 NA other upstream 4440830 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 4882491 21920427 ~ 21926307 (-)
G685953 NA other upstream 5121094 22159030 ~ 22161042 (-)

Expression


Co-expression Network