LOC110529511 (LOC106571328)


Basic Information

Item Value
gene id LOC110529511
gene name LOC106571328
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17682064 ~ 17701475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611755.2
TTTGGACTCTCGGGCTTTCCGTATTACGTTGCTGTTATGTTGACGTGTGAATTTGTGAATCACTACTAGCTAACGTTATTGTACTTTGCACAACATGGTTTAGCTAGTAGCAAGAAATATAGCCATAGAGTTGAAGATTATCGCTCATGCAAACCTGTAGTGGAATCGTTTTAGAAACCCACCAATACGATGGCAGCCGCCTGGGAAGAAATCAGACGTCTGGCAGCGGATTTCCAGAGAGCACAGTTTGCTGACACAGTGCAGAGGTTGTCCGAGAGGAACTGCATTGAAATCGTTGCCAAGCTGGTTGAAGAGAAAAAGTTGGATGTGGTACACACACTTGATGGCAAAGAGTACATAACCCCATCCCAAATCAGTAGAGAGATACGGGATGAGCTCTACGTCCATGGAGGTCGGGTCAACATTGTGGACCTACAGAAGGATATCAACGTTGATTGGGTTCATGTTGAGGCCAGAGCAAATGACATTGCAAGATCTGATAAAAGCGTTCAACTGGTGCTGGGGCAGCTTATCGATGAAAACTACCTGAATCGAGTTTCTGAGGAGGTGAATGATAAACTACAAGAGGCAGGCTTTGTGAACATCCCAGAACTATGTAAAAACTATGATCTTCCAGGGGACTTCCTGACTGAGGAGCTGTCGAAGCGCCTTGGGAAAGTCATCCAAGGCCAGATGGATGAGTACAACAGGGGAGTCTTATTTACCCCTGCATTTGTCTCTCGCCATGGAGCTCGCATCCGTGGGCTTTTCAGTGCGGTGACTCGGCCAACACCAGTTGGTAGTGTGATTGGCGTCTATGGTTTTCAGGAACATCTTCTCTACTCTGTTTTGGAGGAGCTGGTGAATACTGGCCGTCTGAAAGGCACTGTGGTGGGGGGCCGGCAGGACAAAGCTGTCTACATCCCTGACATCTACTCCAGAACACAGAATGCCTGGGTGGACTCCTTCCTCAAGCAGAATGGCTATTTAGAGTTTGATTCTTTGATCAGACTTGGCATCCCTGACCCAGTGAGCTACATCAAGAAACGTTTCAAGTCCAGCAAGCTGCTGTTTCTCAGGGCAGCCTGTGTAGGCCAGGCCCTGGTAGACCAGGTGGAGGCTTCTGTGGAGGAGGCTGTCAACTCTGCCACATGGGCCGATGTGCAGCCCATTCTGCCCAGCTGTCTGTCCATGGAGGACGTTGGCATCATAATCAACGAGGCCATGAGAACGACCAACGTGCTGTCGACTGCCAGGGTCCTGGGAGACACCGTGGTGATCAGCGAGAAGTTCATCAgcaactgtctctgtctctttgagGAAACCATGCAGCATAAAGCTCAGAAGGAAGCCAAGAACAACCCTGTTTTCCTGATAACTGAAGATGATCTCAAGCAAGGTGCTATGATGACAGAAAATACAGCCCCCTCCaaaaaggagaagagggaggcgGAGAGGAGGAAAAAGACTACAGAGGGCAGTGGCAGtaaaggaggtggtggaggatgcAATGCCAGAGAGGTCAGGATACGCAAAACCAAGAAGAAGGGCAGGAGGGACGATGACAGTGACGAGGAGACAGCAGTCATCCCACAAAATCGTAACAAACAGACTGAAGTCCCCTTCATGGCCCTGGAGGAGATCACTGCTGTCCtagaagagagagtgtgtgactgCCCCGAAGAAATCCTCTCTGAGTTGGCGGAGCATTTAGTAAGGCCTTTGACTAAGACCTACCAGGAGGTGGTTCGGACTGTGTTCATGTCTTCCACTAGCTCCACGACTGGGGTGACAAAGAAGAGAAGTGTGAAAGACTTCCAGGAGGAGCTCTCCAACCTGTACAACAACATCAGGCTCTTTGAGAAAGGGACCAAGCTCTTCTCTGATGAGACCCAGGTCCACATTGCCAAGTACGTCCTGAAGACAGTGTGCACAGACGTTACCAACATCCTGGTGAATTTCATGGCAGCTGAACTCATGATGTCAGCAGAGAATCCCAGCTCTATCACCAATGAGGTCAGAGTGAAGATATTAGGAATGTTTCCAGTGGAAACCAAAGGGCCTCTTATGAAAGTGCACAACACTCTGAATGGAAAGacAATTGAAGATTTTTTAACCAATATTGAAACGGCAGTTGAGGTGTGTGGATTCATGCTGAAGAAGGGAGACAAGAAAAGAGAAAGACAGGCCCTGTTCCTGCACCGCCAGGCTTTGATAGAGCAGCTGAAGGAGACTGAGGACCCAGCCCTGATTCTCCACCTGACCAGTGTGCTGCTCTTCCAGGCCAGCACCCACTGCATGCTGCACGCCCCCGGACGCTGTGTCCCCCAGATCATAGGGACTCTGGTGGGCCGCGTCTCTGAGGAGCAGCACAGGCTGCTGACGGGCTTCCAGGGTCTGGTGGTTAAGAGGTTGGTGAGCCAGAGCCAGGGGAAAAAGcaggagcagggggagggagagaacccAGAGGAGGGGGACGAGGCAGAGGCCATCCGGAAGGAGCTGGTCTCCCTAACCAGCGAGGTAAAGGATCTGGTCCTCTCTCAGAAGAAGACGTCTGGGACTGAAGAGTAAATGGGCTTGTGCCACATCGACTGCGTTGCAGTTGGAAACTGCCAGCTGACTGatctgatctacaaatcacctaactactcattattatttgtagatcagccTGTTAGTACCGATTTACCCACAATCAATTGCGGATTTATTGCTCGCCAATGAAGCAGCCAATGAATATCTAGAGATCTAGAAAAAAATCATAAAAGAATAATGACATTCTGTAGAGAAGCTGCGCCAAACACAATTGTCTTACAAAGTGATTTCTCAACAGTCGTACCCATTTAGACTAAGAAATATCTGATACCCACCTAGTGTAGTAGCGTTGTGAATGGTCCTGTTATTTCAAATGATTTGCAGTAAATTCCTTTGGGATATCATTTGAATTAACATTCCAATTAAGTCCTCAGTGCAGTAATGTAATAAATAATTCATGGATGAATTAAAAAACACTTAGCCTCTCATGGAATGTAACTTAGTTTGTATCTTTTGGGTTTATATTCAACATGATAATTCAGAGGTGGTAACTGTTTTATTCATGTCACTTCAAATTTCACAGAAGCTAGATATGTATCCATAGTAGTCTTAAATCACTGCCTCATCCAGGCTACTGTATCTTCAGTATCTTCTTCATTCTACTGAAATGAAAGATACACAGACCACTGGCGCCCTCTATTGATAACACACACGGGGACCAACTGCACATGAAACTTGTATTAGGGACAGATCTAAATTTACTGGGGAGGGGGCGAGTCCAACTAAAGGTGTCATGAAATAAATTGAAGACCCTCCCCCTCAAACAATGAAAAACAATAACTAGcgaccctgtgtttataaacgTGGATATCAACTTTGCCACTTGTGTGGCACATGCCACGTAGGCTACGGGCCAGAAAGTTGAGGGTTCACCGCCACCACAGACGAGCTCCTTCTCCCTCCCCGTTTCATTTACACTACAATCAGAGCCagctgcagacaatgatcagctagggggAAATCAGATGTTCTACATTCTGATGGCATATTTATAATAACATAAAATATATGTAACAAATGTCAATGCACCAtacaaccaataaacaaagcatacTGACTGGGCACT
>XM_036984913.1
TTTGGACTCTCGGGCTTTCCGTATTACGTTGCTGTTATGTTGACGTGTGAATTTGTGAATCACTACTAGCTAACGTTATTGTACTTTGCACAACATGGTTTAGCTAGTAGCAAGAAATATAGCCATAGAGTTGAAGATTATCGCTCATGCAAACCTGTAGTGGAATCGTTTTAGAAACCCACCAATACGATGGCAGCCGCCTGGGAAGAAATCAGACGTCTGGCAGCGGATTTCCAGAGAGCACAGTTTGCTGACACAGTGCAGAGGTTGTCCGAGAGGAACTGCATTGAAATCGTTGCCAAGCTGGTTGAAGAGAAAAAGTTGGATGTGGTACACACACTTGATGGCAAAGAGTACATAACCCCATCCCAAATCAGTAGAGAGATACGGGATGAGCTCTACGTCCATGGAGGATATCAACGTTGATTGGGTTCATGTTGAGGCCAGAGCAAATGACATTGCAAGATCTGATAAAAGCGTTCAACTGGTGCTGGGGCAGCTTATCGATGAAAACTACCTGAATCGAGTTTCTGAGGAGGTGAATGATAAACTACAAGAGGCAGGCTTTGTGAACATCCCAGAACTATGTAAAAACTATGATCTTCCAGGGGACTTCCTGACTGAGGAGCTGTCGAAGCGCCTTGGGAAAGTCATCCAAGGCCAGATGGATGAGTACAACAGGGGAGTCTTATTTACCCCTGCATTTGTCTCTCGCCATGGAGCTCGCATCCGTGGGCTTTTCAGTGCGGTGACTCGGCCAACACCAGTTGGTAGTGTGATTGGCGTCTATGGTTTTCAGGAACATCTTCTCTACTCTGTTTTGGAGGAGCTGGTGAATACTGGCCGTCTGAAAGGCACTGTGGTGGGGGGCCGGCAGGACAAAGCTGTCTACATCCCTGACATCTACTCCAGAACACAGAATGCCTGGGTGGACTCCTTCCTCAAGCAGAATGGCTATTTAGAGTTTGATTCTTTGATCAGACTTGGCATCCCTGACCCAGTGAGCTACATCAAGAAACGTTTCAAGTCCAGCAAGCTGCTGTTTCTCAGGGCAGCCTGTGTAGGCCAGGCCCTGGTAGACCAGGTGGAGGCTTCTGTGGAGGAGGCTGTCAACTCTGCCACATGGGCCGATGTGCAGCCCATTCTGCCCAGCTGTCTGTCCATGGAGGACGTTGGCATCATAATCAACGAGGCCATGAGAACGACCAACGTGCTGTCGACTGCCAGGGTCCTGGGAGACACCGTGGTGATCAGCGAGAAGTTCATCAgcaactgtctctgtctctttgagGAAACCATGCAGCATAAAGCTCAGAAGGAAGCCAAGAACAACCCTGTTTTCCTGATAACTGAAGATGATCTCAAGCAAGGTGCTATGATGACAGAAAATACAGCCCCCTCCaaaaaggagaagagggaggcgGAGAGGAGGAAAAAGACTACAGAGGGCAGTGGCAGtaaaggaggtggtggaggatgcAATGCCAGAGAGGTCAGGATACGCAAAACCAAGAAGAAGGGCAGGAGGGACGATGACAGTGACGAGGAGACAGCAGTCATCCCACAAAATCGTAACAAACAGACTGAAGTCCCCTTCATGGCCCTGGAGGAGATCACTGCTGTCCtagaagagagagtgtgtgactgCCCCGAAGAAATCCTCTCTGAGTTGGCGGAGCATTTAGTAAGGCCTTTGACTAAGACCTACCAGGAGGTGGTTCGGACTGTGTTCATGTCTTCCACTAGCTCCACGACTGGGGTGACAAAGAAGAGAAGTGTGAAAGACTTCCAGGAGGAGCTCTCCAACCTGTACAACAACATCAGGCTCTTTGAGAAAGGGACCAAGCTCTTCTCTGATGAGACCCAGGTCCACATTGCCAAGTACGTCCTGAAGACAGTGTGCACAGACGTTACCAACATCCTGGTGAATTTCATGGCAGCTGAACTCATGATGTCAGCAGAGAATCCCAGCTCTATCACCAATGAGGTCAGAGTGAAGATATTAGGAATGTTTCCAGTGGAAACCAAAGGGCCTCTTATGAAAGTGCACAACACTCTGAATGGAAAGacAATTGAAGATTTTTTAACCAATATTGAAACGGCAGTTGAGGTGTGTGGATTCATGCTGAAGAAGGGAGACAAGAAAAGAGAAAGACAGGCCCTGTTCCTGCACCGCCAGGCTTTGATAGAGCAGCTGAAGGAGACTGAGGACCCAGCCCTGATTCTCCACCTGACCAGTGTGCTGCTCTTCCAGGCCAGCACCCACTGCATGCTGCACGCCCCCGGACGCTGTGTCCCCCAGATCATAGGGACTCTGGTGGGCCGCGTCTCTGAGGAGCAGCACAGGCTGCTGACGGGCTTCCAGGGTCTGGTGGTTAAGAGGTTGGTGAGCCAGAGCCAGGGGAAAAAGcaggagcagggggagggagagaacccAGAGGAGGGGGACGAGGCAGAGGCCATCCGGAAGGAGCTGGTCTCCCTAACCAGCGAGGTAAAGGATCTGGTCCTCTCTCAGAAGAAGACGTCTGGGACTGAAGAGTAAATGGGCTTGTGCCACATCGACTGCGTTGCAGTTGGAAACTGCCAGCTGACTGatctgatctacaaatcacctaactactcattattatttgtagatcagccTGTTAGTACCGATTTACCCACAATCAATTGCGGATTTATTGCTCGCCAATGAAGCAGCCAATGAATATCTAGAGATCTAGAAAAAAATCATAAAAGAATAATGACATTCTGTAGAGAAGCTGCGCCAAACACAATTGTCTTACAAAGTGATTTCTCAACAGTCGTACCCATTTAGACTAAGAAATATCTGATACCCACCTAGTGTAGTAGCGTTGTGAATGGTCCTGTTATTTCAAATGATTTGCAGTAAATTCCTTTGGGATATCATTTGAATTAACATTCCAATTAAGTCCTCAGTGCAGTAATGTAATAAATAATTCATGGATGAATTAAAAAACACTTAGCCTCTCATGGAATGTAACTTAGTTTGTATCTTTTGGGTTTATATTCAACATGATAATTCAGAGGTGGTAACTGTTTTATTCATGTCACTTCAAATTTCACAGAAGCTAGATATGTATCCATAGTAGTCTTAAATCACTGCCTCATCCAGGCTACTGTATCTTCAGTATCTTCTTCATTCTACTGAAATGAAAGATACACAGACCACTGGCGCCCTCTATTGATAACACACACGGGGACCAACTGCACATGAAACTTGTATTAGGGACAGATCTAAATTTACTGGGGAGGGGGCGAGTCCAACTAAAGGTGTCATGAAATAAATTGAAGACCCTCCCCCTCAAACAATGAAAAACAATAACTAGcgaccctgtgtttataaacgTGGATATCAACTTTGCCACTTGTGTGGCACATGCCACGTAGGCTACGGGCCAGAAAGTTGAGGGTTCACCGCCACCACAGACGAGCTCCTTCTCCCTCCCCGTTTCATTTACACTACAATCAGAGCCagctgcagacaatgatcagctagggggAAATCAGATGTTCTACATTCTGATGGCATATTTATAATAACATAAAATATATGTAACAAATGTCAATGCACCAtacaaccaataaacaaagcatacTGACTGGGCACT

Function

NR:

description
E3 UFM1-protein ligase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611755.2 False 3664 mRNA 0.47 19 17682064 17701475
XM_036984913.1 True 3635 mRNA 0.47 18 17682064 17701475

Neighbor

gene id symbol gene type direction distance location
LOC110529193 NA coding upstream 76 17680205 ~ 17681988 (+)
LOC110529507 LOC106571333 coding upstream 756376 16921776 ~ 16925688 (+)
LOC110529505 LOC106571335 coding upstream 760367 16893102 ~ 16921697 (+)
LOC110529502 LOC106571295 coding upstream 856048 16793718 ~ 16826016 (+)
LOC110529497 LOC106571290 coding upstream 1051796 16624843 ~ 16630268 (+)
LOC110529515 LOC106571324 coding downstream 123961 17825436 ~ 17833210 (+)
LOC110529518 LOC106571322 coding downstream 144243 17845718 ~ 17857814 (+)
LOC110529519 LOC106571321 coding downstream 257676 17959151 ~ 18057345 (+)
LOC110531073 NA coding downstream 461230 18162705 ~ 18164856 (+)
LOC110529521 LOC106571319 coding downstream 572892 18274367 ~ 18311064 (+)
G680197 NA non-coding upstream 20577 17661183 ~ 17661487 (+)
G680157 NA non-coding upstream 41815 17613534 ~ 17640249 (+)
G680156 NA non-coding upstream 41945 17613104 ~ 17640119 (+)
G680124 NA non-coding upstream 95548 17586246 ~ 17586516 (+)
G680072 NA non-coding upstream 130422 17551415 ~ 17551642 (+)
G680218 NA non-coding downstream 11671 17713146 ~ 17718004 (+)
G680174 NA non-coding downstream 18218 17719693 ~ 17720175 (+)
G680223 NA non-coding downstream 23756 17725231 ~ 17727416 (+)
G680224 LOC106571323 non-coding downstream 29530 17731005 ~ 17731344 (+)
G680231 NA non-coding downstream 38366 17739841 ~ 17740092 (+)
LOC110529493 LOC106571284 other upstream 1293728 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 1296119 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 2422074 15258311 ~ 15260331 (+)
G676919 NA other upstream 2574921 15105603 ~ 15107143 (+)
G681909 NA other downstream 1462461 19163936 ~ 19165640 (+)
G682611 NA other downstream 2027358 19728833 ~ 19729671 (+)
G683669 NA other downstream 2861400 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 2925475 20626950 ~ 20632899 (+)
G683845 NA other downstream 3005583 20707058 ~ 20707371 (+)

Expression


Co-expression Network