LOC110529514 (LOC106571323)


Basic Information

Item Value
gene id LOC110529514
gene name LOC106571323
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17728290 ~ 17756041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611758.2
ccaggcacttACCCATACTGCCCCTCATACAAAAGAGTATATGACGTTCTCTCCAAAACAGCAATTTCTCCCCTTACGCAGAATGGTAACTTTTTTTCACCACTTGAAAGATTCAACCCATCGATGAATGTCGCGGGGATTCTATTATGAAGTGACTGGTAGGAGTATCAAATCTGGACTACAATTTTACAACTGGTTTTGACAGCTGAGCTCTGTTGGAAATGCCACGGCGCCCTCTCTGATGTGAGGATGAGGTCCTACACCAGAGGGGCCCCCACAGCGTTCTTCATAAGTCTACTGTGGCCCCTGGTGTCCCCGGTGgtgggggtgggagaggagaCGGACCCCACTGGAGGGATACCCTTCATGGGAGGGAACTACGATGGACACCCCATGCTGTTTTTCGGCcagggtgaggtggaggagttgCAGGAGGCAGCGGCTGGGACTCACCGGGAGATGGCTGCAAGGATCCGCGAGGCGGGGGAGGCCATGCTGGAGCACCCTGAGGAATACCTGCCCCCCTGGAGCCCGGCCGAGTTCAGCGCCCGCTGGAACGAGGTGTATGGAAACAACCTGGGAGTGTTGTCTATGTTCTGTCTGCTCTACCCCCACAGGGCTGGGGCCCTTGACCTGGCCAAGGATTACATGGAGAGGATGGCAGCTCAGCCTAGTTGGTTGGTTAAAGATGCTCCTTGGGATGAGGTTCCTGTAGCCCACTCTCTGGTTGGCTTCGCTACAGCCTATGACTTCCTGTATGAGTACCTGAgcaaggtgcagcaggagcacTTCCTGCGGGTGATCGGTAATGCTACGCGCTTCATGTATGAGAAGTCCTACATCCGCGGCTGGGGCTTCCAGTACCTGCACAACCACCAGCCCACCAACTGTGTGGCTCTCCTCACTGGCAGCCTGGTCTACATGGCCCAGGgttATCTGCAGGAGGCCTACCTGTGGACTAAGCAGGTTCTGGCCATCATGGAGAAGTCTATGGTGCTCCTCCAGGATGTGACGGACGGCTCGCTGTATGAGGGCGTGGCCTACGGGACCTACACCACCCGCTCTCTATTCCAGTACATATTCCTGGTGCAGAGACACTTCTCCATCAGCCACTTCGACCACCCCTGGCTCCACAAACACTTTGCATTCATGTACAGGACCATCCTGCCAGGGTTCCAGAGGACTGTAGCCGTAGCAGATTCCAACTACAATTGGTTCTACGGGCCTGAGAGCCAGCTGGTGTTCCTGGACCGATACGTGATGAGGAACGGCAGCGGGAACTGGCTGGCTGAACTGATCCATCAGAACCGGGTGTTGGAGGGGCCAGGACAGGCCGGGAAGGGACAGAGATGGTGCACACTGCACACAGAGTTCATCTGGTATGATCCAAGCCTGACTCCCAGGGCTCCTGCAGACTTCGGTACATCCCAACTCCACTACTTTGAGGACTGGGGGGTCGTCACGTATGGAAGTGCTTTACCTGCAGACACCAACCACACCTTCCTCTCTTTCAAGTCGGGGAAGCTGGGTGGACGGGCCATATTTGACATTGTTCACAGGAACAAGTACAAAGACTGGATCAAAGGGTGGCGGAACTTTAATGCTGGCCATGAGCACCCTGACCAGAACAGCTTTACGTTCGCCCCTAACGGTGTTCCTTTTATCACGGAGGCTCTGTACGGGCCCAAGTATACCTTCCTCAACAATGCAGTGCTGTTCTCCCCAGCTGTCTCAGGGAGCTGCTTCAAGCCATGGGAAGGTCAGGTCACCGAGGCCTGTGACTCCAAGTGGCTGAAGTACAAGGTGGGGCTGGCGGCGAACGCCCAGGGCAGGGTGGAGGCGGCTCTGGAGAGGCAGGGGATGGTGTTCATCCGTGGGGAGGGCCAGTCGGCCTACAACCCTGACCTGAACATCAGGAGCTTCCAGAGGAACCTGCTGCTCCTGCACCCCCAGCTGCTGGTCCTAGTGGATCATGTCCATCTGGAGACAGACAGCCCAACCAGGGCCATGAGTGCCTTCTTCCACAACACGGACCTGTCCTTTCAGGAAGCCAAAATAGATGGTGTGCATGGAGCCTTTGTCAGACACGGTGAAGACCCGTATAAAATGTTCTGGATGGATGACACGGGCTTCAGTGAGAAAGGGGTCTTGGGGTACTGGAACTATCCACGTGGTTACCCCTATAATGGCTCTAACTATGTGAATGTGACAATGCCACTGAGGTATCCACACACCAGGGTGGCCTATATCTTCTTTGGGCCGGGGGTGGACGTGCAGAGCTTTAGCCTGCGTGCTGATGCTAATAGGGTGGACATTTACCTGGCCACCAACGAGCACACCTACACCATCTACCTTCTGACAGGAGAGGTGACCAACAAGCCTCTGTTCGCCATGGTACTGGTGGACCAGAAGAAGATTGTGTTTGAGAAAGCAGCAGGAGTGCTGAACGACACgccagaggaggtggaggagtatGTCAACGTAGTAGAGGACAACCTCCAGCATGCCAAGCCTGTTTTCCAGCAGCTGGAGAGACACATTCTGGGCAGGGTACTCAACACGGCCAGCTTCCGCAAGGCAGCTGAGCGCCTCCTACAGTTCTCAGACAAGAAGAAGACAGAGGAGGCTATCGAGAAAATGTTTGCTCTGACTAAGAAACAGGGCAAAGGAAAGGGGGCCAAGAAAGCCTTGGGGAACCTTGGGAACGAGCTCTCAGAGAGCCTGCCTGACATATTTGCACAGATCGAGGTGAGTGAGAAGAAACAGAGATCGAAGAGCACAAAGCGGATTATTGAGGAGAGCTCAGAGGAGGATGGAGACTCCAGGGCGTTTATGGATTATGGAGACTCAAATAAAGGCAGGAAGGGTGGCTTTGTTAAGGGTCGCAAGTTCAAGGAGGTCCACATGTCGGCAACAGCCAAGAGTGACAGTCTGTCAAACGTAGCCTCTTATATCAGACTATTCCTAATCTTAAACATAGCCACCTTCTTCCTGCTACTGGCTGTGTTATTGACACGCTTCCAGAGAGGCAGAAGTCTACACACCCAAAGGTGTTTCTATGGCATTCTCCTCATCGACAGCTTCATTTTACTCTGCCTCTACTCTTCCTGCTCTCGCACACAGTGTTGACATCATTACTGTGCAACGACGGGGAATGTCAATGTACAGACAGACCTATTGAACTATTGTAGTTCGCCATGGGTGATTAAAATGCACCATACACCTCAGTCTGAGCCAAATCTACCTGATGGGTGTCCAGGAAATCATTAATTCCAAATAGGAATTGATAGACTTGACGATATTAAGCCAGACCACCTCTGAGATCCTAAGCTTCTGTGGAGCTTGAGAATGGAGTCTGTATAAACTTTGTCATGTACAGTTTTTAGATTAGACCCCCTGACTCATATCAAAGATCTCCAAGGCTAGCCACTAAAATGCAgatgtctctgcctctctctgtgtacGTTTTGACATGCAGTCTGTCATAAATAATATAgaaaggtcgggtgattgtggaggccaggtcatctgatgcagcactccatcactctccttggtcaaatagcccttacacagcctggaggtgtgttttgggtcaatgtcctgttgaaaaacaactgatagtcccactaaacgcaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatcacagacagtttcACCAGCAATGCACCCTCACACTATcatacttcctcctccatgcttcacggtgggaaccacacatgcagagatcatccgttcacctactgtactctgtgtctcacaaagacactgccgttggaaccaaaaatctcacatttggactc

Function

NR:

description
dermatan-sulfate epimerase-like

GO: NA

KEGG:

id description
K01794 DSE; chondroitin-glucuronate 5-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611758.2 True 3875 mRNA 0.52 6 17728290 17756041

Neighbor

gene id symbol gene type direction distance location
LOC110529513 LOC106571326 coding downstream 4417 17720967 ~ 17723873 (-)
LOC110529512 LOC106571327 coding downstream 8095 17706609 ~ 17720195 (-)
LOC110529510 LOC106571329 coding downstream 229306 17422766 ~ 17498984 (-)
LOC110529509 LOC106571331 coding downstream 646711 17056115 ~ 17081579 (-)
LOC110529508 LOC106571332 coding downstream 690354 16925897 ~ 17037936 (-)
LOC110529517 nt5d1 coding upstream 212 17756253 ~ 17835551 (-)
LOC110529520 marcs coding upstream 313111 18069152 ~ 18072594 (-)
LOC110529526 LOC106571316 coding upstream 826122 18582163 ~ 18587994 (-)
LOC110529198 LOC106571314 coding upstream 832777 18588818 ~ 18674196 (-)
LOC110529527 LOC106571313 coding upstream 920567 18676608 ~ 18687665 (-)
G680582 NA non-coding downstream 10739 17712733 ~ 17717551 (-)
G680581 NA non-coding downstream 12576 17710544 ~ 17715714 (-)
G680572 NA non-coding downstream 25045 17703015 ~ 17703245 (-)
G680571 NA non-coding downstream 26035 17701814 ~ 17702255 (-)
G680573 LOC106571328 non-coding downstream 29110 17698793 ~ 17699180 (-)
G680654 LOC106567469 non-coding upstream 79799 17835840 ~ 17836420 (-)
G680859 NA non-coding upstream 390307 18146348 ~ 18146565 (-)
G680882 NA non-coding upstream 411208 18167249 ~ 18167464 (-)
G680884 NA non-coding upstream 412708 18168749 ~ 18169039 (-)
G680892 NA non-coding upstream 422462 18178503 ~ 18178731 (-)
G679471 NA other downstream 613762 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 1098031 16625090 ~ 16630259 (-)
G679087 NA other downstream 1295276 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 3211762 14508329 ~ 14516528 (-)
G676178 NA other downstream 3439945 14287849 ~ 14288345 (-)
G681659 NA other upstream 1035189 18791230 ~ 18792137 (-)
G684844 NA other upstream 3722725 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 4164386 21920427 ~ 21926307 (-)
G685953 NA other upstream 4402989 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 5860866 23614938 ~ 23659111 (-)

Expression


Co-expression Network